The ocean sampling day consortium

P. Golyshin; A. Kopf; M. Bicak; R. Kottmann; J. Schnetzer; I. Kostadinov; K. Lehmann; A. Fernandez-Guerra; C. Jeanthon; E. Rahav; M. Ullrich; A. Wichels; G. Gerdts; P. Polymenakou; G. Kotoulas; R. Siam; R.Z. Abdallah; E.C. Sonnenschein; T. Cariou; F. O'Gara; S. Jackson; S. Orlic; M. Steinke; J. Busch; B. Duarte; I. Cacador; J. Canning-Clode; O. Bobrova; V. Marteinsson; E. Reynisson; C.M. Loureiro; G.M. Luna; G.M. Quero; C.R. Loscher; A. Kremp; M.E. DeLorenzo; L. Ovreas; J. Tolman; J. LaRoche; A. Penna; M. Frischer; T. Davis; B. Katherine; C.P. Meyer; S. Ramos; C. Magalhaes; F. Jude-Lemeilleur; M.L. Aguirre-Macedo; S. Wang; N. Poulton; S. Jones; R. Collin; J.A. Fuhrman; P. Conan; C. Alonso; N. Stambler; K. Goodwin; M.M. Yakimov; F. Baltar; L. Bodrossy; J. Van De Kamp; D.M. Frampton; M. Ostrowski; P. Van Ruth; P. Malthouse; S. Claus; K. Deneudt; J. Mortelmans; S. Pitois; D. Wallom; I. Salter; R. Costa; D.C. Schroeder; M.M. Kandil; V. Amaral; F. Biancalana; R. Santana; M.L. Pedrotti; T. Yoshida; H. Ogata; T. Ingleton; K. Munnik; N. Rodriguez-Ezpeleta; V. Berteaux-Lecellier; P. Wecker; I. Cancio; D. Vaulot; C. Bienhold; H. Ghazal; B. Chaouni; S. Essayeh; S. Ettamimi; E. Zaid; N. Boukhatem; A. Bouali; R. Chahboune; S. Barrijal; M. Timinouni; F. El Otmani; M. Bennani; M. Mea; N. Todorova; V. Karamfilov; P. ten Hoopen; G. Cochrane; S. L'Haridon; K.C. Bizsel; A. Vezzi; F.M. Lauro; P. Martin; R.M. Jensen; J. Hinks; S. Gebbels; R. Rosselli; F. De Pascale; R. Schiavon; A. dos Santos; E. Villar; S. Pesant; B. Cataletto; F. Malfatti; R. Edirisinghe; J.A. Silveira; M. Barbier; V. Turk; T. Tinta; W.J. Fuller; I. Salihoglu; N. Serakinci; M.C. Ergoren; E. Bresnan; J. Iriberri; P.A. Nyhus; E. Bente; H.E. Karlsen; P.N. Golyshin; J.M. Gasol; S. Moncheva; N. Dzhembekova; Z. Johnson; C.D. Sinigalliano; M.L. Gidley; A. Zingone; R. Danovaro; G. Tsiamis

doi:10.1186/s13742-015-0066-5

The ocean sampling day consortium

P. Golyshin
, A. Kopf
, M. Bicak
, R. Kottmann
, J. Schnetzer
, I. Kostadinov
, K. Lehmann
, A. Fernandez-Guerra
, C. Jeanthon
, E. Rahav
, M. Ullrich
, A. Wichels
, G. Gerdts
, P. Polymenakou
, G. Kotoulas
, R. Siam
, R.Z. Abdallah
, E.C. Sonnenschein
, T. Cariou
, F. O'Gara

S. Jackson, S. Orlic, M. Steinke, J. Busch, B. Duarte, I. Cacador, J. Canning-Clode, O. Bobrova, V. Marteinsson, E. Reynisson, C.M. Loureiro, G.M. Luna, G.M. Quero, C.R. Loscher, A. Kremp, M.E. DeLorenzo, L. Ovreas, J. Tolman, J. LaRoche, A. Penna, M. Frischer, T. Davis, B. Katherine, C.P. Meyer, S. Ramos, C. Magalhaes, F. Jude-Lemeilleur, M.L. Aguirre-Macedo, S. Wang, N. Poulton, S. Jones, R. Collin, J.A. Fuhrman, P. Conan, C. Alonso, N. Stambler, K. Goodwin, M.M. Yakimov, F. Baltar, L. Bodrossy, J. Van De Kamp, D.M. Frampton, M. Ostrowski, P. Van Ruth, P. Malthouse, S. Claus, K. Deneudt, J. Mortelmans, S. Pitois, D. Wallom, I. Salter, R. Costa, D.C. Schroeder, M.M. Kandil, V. Amaral, F. Biancalana, R. Santana, M.L. Pedrotti, T. Yoshida, H. Ogata, T. Ingleton, K. Munnik, N. Rodriguez-Ezpeleta, V. Berteaux-Lecellier, P. Wecker, I. Cancio, D. Vaulot, C. Bienhold, H. Ghazal, B. Chaouni, S. Essayeh, S. Ettamimi, E. Zaid, N. Boukhatem, A. Bouali, R. Chahboune, S. Barrijal, M. Timinouni, F. El Otmani, M. Bennani, M. Mea, N. Todorova, V. Karamfilov, P. ten Hoopen, G. Cochrane, S. L'Haridon, K.C. Bizsel, A. Vezzi, F.M. Lauro, P. Martin, R.M. Jensen, J. Hinks, S. Gebbels, R. Rosselli, F. De Pascale, R. Schiavon, A. dos Santos, E. Villar, S. Pesant, B. Cataletto, F. Malfatti, R. Edirisinghe, J.A. Silveira, M. Barbier, V. Turk, T. Tinta, W.J. Fuller, I. Salihoglu, N. Serakinci, M.C. Ergoren, E. Bresnan, J. Iriberri, P.A. Nyhus, E. Bente, H.E. Karlsen, P.N. Golyshin, J.M. Gasol, S. Moncheva, N. Dzhembekova, Z. Johnson, C.D. Sinigalliano, M.L. Gidley, A. Zingone, R. Danovaro, G. Tsiamis

Research output: Contribution to journal › Article › peer-review

Abstract

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Original language	English
Journal	Giga Science
Volume	4
Issue number	27
DOIs	https://doi.org/10.1186/s13742-015-0066-5
Publication status	Published - 19 Jun 2015

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 14 Life Below Water

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10.1186/s13742-015-0066-5Licence: CC BY

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Golyshin, P., Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R. Z., Sonnenschein, E. C., Cariou, T., ... Tsiamis, G. (2015). The ocean sampling day consortium. Giga Science, 4(27). https://doi.org/10.1186/s13742-015-0066-5

@article{45a086ac51104c62b7ac694134985b61,

title = "The ocean sampling day consortium",

abstract = "Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world{\textquoteright}s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.",

author = "P. Golyshin and A. Kopf and M. Bicak and R. Kottmann and J. Schnetzer and I. Kostadinov and K. Lehmann and A. Fernandez-Guerra and C. Jeanthon and E. Rahav and M. Ullrich and A. Wichels and G. Gerdts and P. Polymenakou and G. Kotoulas and R. Siam and R.Z. Abdallah and E.C. Sonnenschein and T. Cariou and F. O'Gara and S. Jackson and S. Orlic and M. Steinke and J. Busch and B. Duarte and I. Cacador and J. Canning-Clode and O. Bobrova and V. Marteinsson and E. Reynisson and C.M. Loureiro and G.M. Luna and G.M. Quero and C.R. Loscher and A. Kremp and M.E. DeLorenzo and L. Ovreas and J. Tolman and J. LaRoche and A. Penna and M. Frischer and T. Davis and B. Katherine and C.P. Meyer and S. Ramos and C. Magalhaes and F. Jude-Lemeilleur and M.L. Aguirre-Macedo and S. Wang and N. Poulton and S. Jones and R. Collin and J.A. Fuhrman and P. Conan and C. Alonso and N. Stambler and K. Goodwin and M.M. Yakimov and F. Baltar and L. Bodrossy and \{Van De Kamp\}, J. and D.M. Frampton and M. Ostrowski and \{Van Ruth\}, P. and P. Malthouse and S. Claus and K. Deneudt and J. Mortelmans and S. Pitois and D. Wallom and I. Salter and R. Costa and D.C. Schroeder and M.M. Kandil and V. Amaral and F. Biancalana and R. Santana and M.L. Pedrotti and T. Yoshida and H. Ogata and T. Ingleton and K. Munnik and N. Rodriguez-Ezpeleta and V. Berteaux-Lecellier and P. Wecker and I. Cancio and D. Vaulot and C. Bienhold and H. Ghazal and B. Chaouni and S. Essayeh and S. Ettamimi and E. Zaid and N. Boukhatem and A. Bouali and R. Chahboune and S. Barrijal and M. Timinouni and \{El Otmani\}, F. and M. Bennani and M. Mea and N. Todorova and V. Karamfilov and \{ten Hoopen\}, P. and G. Cochrane and S. L'Haridon and K.C. Bizsel and A. Vezzi and F.M. Lauro and P. Martin and R.M. Jensen and J. Hinks and S. Gebbels and R. Rosselli and \{De Pascale\}, F. and R. Schiavon and \{dos Santos\}, A. and E. Villar and S. Pesant and B. Cataletto and F. Malfatti and R. Edirisinghe and J.A. Silveira and M. Barbier and V. Turk and T. Tinta and W.J. Fuller and I. Salihoglu and N. Serakinci and M.C. Ergoren and E. Bresnan and J. Iriberri and P.A. Nyhus and E. Bente and H.E. Karlsen and P.N. Golyshin and J.M. Gasol and S. Moncheva and N. Dzhembekova and Z. Johnson and C.D. Sinigalliano and M.L. Gidley and A. Zingone and R. Danovaro and G. Tsiamis",

year = "2015",

month = jun,

day = "19",

doi = "10.1186/s13742-015-0066-5",

language = "English",

volume = "4",

journal = "Giga Science",

number = "27",

}

Golyshin, P, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Cacador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Loscher, CR, Kremp, A, DeLorenzo, ME, Ovreas, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhaes, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DM, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, E, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Todorova, N, Karamfilov, V, ten Hoopen, P, Cochrane, G, L'Haridon, S, Bizsel, KC, Vezzi, A, Lauro, FM, Martin, P, Jensen, RM, Hinks, J, Gebbels, S, Rosselli, R, De Pascale, F, Schiavon, R, dos Santos, A, Villar, E, Pesant, S, Cataletto, B, Malfatti, F, Edirisinghe, R, Silveira, JA, Barbier, M, Turk, V, Tinta, T, Fuller, WJ, Salihoglu, I, Serakinci, N, Ergoren, MC, Bresnan, E, Iriberri, J, Nyhus, PA, Bente, E, Karlsen, HE, Golyshin, PN, Gasol, JM, Moncheva, S, Dzhembekova, N, Johnson, Z, Sinigalliano, CD, Gidley, ML, Zingone, A, Danovaro, R & Tsiamis, G 2015, 'The ocean sampling day consortium', Giga Science, vol. 4, no. 27. https://doi.org/10.1186/s13742-015-0066-5

TY - JOUR

T1 - The ocean sampling day consortium

AU - Golyshin, P.

AU - Kopf, A.

AU - Bicak, M.

AU - Kottmann, R.

AU - Schnetzer, J.

AU - Kostadinov, I.

AU - Lehmann, K.

AU - Fernandez-Guerra, A.

AU - Jeanthon, C.

AU - Rahav, E.

AU - Ullrich, M.

AU - Wichels, A.

AU - Gerdts, G.

AU - Polymenakou, P.

AU - Kotoulas, G.

AU - Siam, R.

AU - Abdallah, R.Z.

AU - Sonnenschein, E.C.

AU - Cariou, T.

AU - O'Gara, F.

AU - Jackson, S.

AU - Orlic, S.

AU - Steinke, M.

AU - Busch, J.

AU - Duarte, B.

AU - Cacador, I.

AU - Canning-Clode, J.

AU - Bobrova, O.

AU - Marteinsson, V.

AU - Reynisson, E.

AU - Loureiro, C.M.

AU - Luna, G.M.

AU - Quero, G.M.

AU - Loscher, C.R.

AU - Kremp, A.

AU - DeLorenzo, M.E.

AU - Ovreas, L.

AU - Tolman, J.

AU - LaRoche, J.

AU - Penna, A.

AU - Frischer, M.

AU - Davis, T.

AU - Katherine, B.

AU - Meyer, C.P.

AU - Ramos, S.

AU - Magalhaes, C.

AU - Jude-Lemeilleur, F.

AU - Aguirre-Macedo, M.L.

AU - Wang, S.

AU - Poulton, N.

AU - Jones, S.

AU - Collin, R.

AU - Fuhrman, J.A.

AU - Conan, P.

AU - Alonso, C.

AU - Stambler, N.

AU - Goodwin, K.

AU - Yakimov, M.M.

AU - Baltar, F.

AU - Bodrossy, L.

AU - Van De Kamp, J.

AU - Frampton, D.M.

AU - Ostrowski, M.

AU - Van Ruth, P.

AU - Malthouse, P.

AU - Claus, S.

AU - Deneudt, K.

AU - Mortelmans, J.

AU - Pitois, S.

AU - Wallom, D.

AU - Salter, I.

AU - Costa, R.

AU - Schroeder, D.C.

AU - Kandil, M.M.

AU - Amaral, V.

AU - Biancalana, F.

AU - Santana, R.

AU - Pedrotti, M.L.

AU - Yoshida, T.

AU - Ogata, H.

AU - Ingleton, T.

AU - Munnik, K.

AU - Rodriguez-Ezpeleta, N.

AU - Berteaux-Lecellier, V.

AU - Wecker, P.

AU - Cancio, I.

AU - Vaulot, D.

AU - Bienhold, C.

AU - Ghazal, H.

AU - Chaouni, B.

AU - Essayeh, S.

AU - Ettamimi, S.

AU - Zaid, E.

AU - Boukhatem, N.

AU - Bouali, A.

AU - Chahboune, R.

AU - Barrijal, S.

AU - Timinouni, M.

AU - El Otmani, F.

AU - Bennani, M.

AU - Mea, M.

AU - Todorova, N.

AU - Karamfilov, V.

AU - ten Hoopen, P.

AU - Cochrane, G.

AU - L'Haridon, S.

AU - Bizsel, K.C.

AU - Vezzi, A.

AU - Lauro, F.M.

AU - Martin, P.

AU - Jensen, R.M.

AU - Hinks, J.

AU - Gebbels, S.

AU - Rosselli, R.

AU - De Pascale, F.

AU - Schiavon, R.

AU - dos Santos, A.

AU - Villar, E.

AU - Pesant, S.

AU - Cataletto, B.

AU - Malfatti, F.

AU - Edirisinghe, R.

AU - Silveira, J.A.

AU - Barbier, M.

AU - Turk, V.

AU - Tinta, T.

AU - Fuller, W.J.

AU - Salihoglu, I.

AU - Serakinci, N.

AU - Ergoren, M.C.

AU - Bresnan, E.

AU - Iriberri, J.

AU - Nyhus, P.A.

AU - Bente, E.

AU - Karlsen, H.E.

AU - Golyshin, P.N.

AU - Gasol, J.M.

AU - Moncheva, S.

AU - Dzhembekova, N.

AU - Johnson, Z.

AU - Sinigalliano, C.D.

AU - Gidley, M.L.

AU - Zingone, A.

AU - Danovaro, R.

AU - Tsiamis, G.

PY - 2015/6/19

Y1 - 2015/6/19

N2 - Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

AB - Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

U2 - 10.1186/s13742-015-0066-5

DO - 10.1186/s13742-015-0066-5

M3 - Article

VL - 4

JO - Giga Science

JF - Giga Science

IS - 27

ER -

The ocean sampling day consortium

Abstract

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