Dr Robert Griffiths

Athro mewn Microbioleg Amgylcheddol

Contact info

Rob Griffiths is an environmental microbiologist whose research focuses on understanding the "natural" and human associated drivers of microbial biodiversity, and understanding the role of microbiomes in environmental health. He uses molecular, biogeochemical and data-driven approaches to uncover fundamental ecological processes operating on microbial communities and impacting functional outcomes.

  1. Erthygl › Ymchwil › Adolygwyd gan gymheiriaid
  2. 13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere

    Griffiths, R. I., Manefield, M., Ostle, N., McNamara, N., O'Donnell, A. G., Bailey, M. J. & Whiteley, A. S., Gorff 2004, Yn: Journal of Microbiological Methods. 58, 1, t. 119-129 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  3. A method of establishing a transect for biodiversity and ecosystem function monitoring across Europe: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Stone, D., Blomkvist, P., Hendriksen, N. B., Bonkowski, M., Jørgensen, H. B., Carvalho, F., Dunbar, M. B., Gardi, C., Geisen, S., Griffiths, R., Hug, A. S., Jensen, J., Laudon, H., Mendes, S., Morais, P. V., Orgiazzi, A., Plassart, P., Römbke, J., Rutgers, M., Schmelz, R. M., Sousa, J. P., Steenbergen, E., Suhadolc, M., Winding, A., Zupan, M., Lemanceau, P. & Creamer, R. E., Ion 2016, Yn: Applied Soil Ecology. 97, t. 3-11 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  4. Analysis of the microbial functional diversity within water-stressed soil communities by flow cytometric analysis and CTC+ cell sorting

    Whiteley, A. S., Griffiths, R. I. & Bailey, M. J., Awst 2003, Yn: Journal of Microbiological Methods. 54, 2, t. 257-267 11 t.

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  5. Aspects of microbial communities in peatland carbon cycling under changing climate and land use pressures

    Robinson, C., Ritson, J., Alderson, D., Malik, A. A., Griffiths, R. I., Heinemeyer, A., Gallego-Sala, A. V., Quillet, A., Robroek, B. J. M., Evans, C., Chandler, D. M., Elliott, D. R., Shuttleworth, E., Lilleskov, E. A., Kitson, E., Cox, F., Worrall, F., Clay, G., Crosher, I., Pratscher, J., Bird, J., Walker, J., Belyea, L. R., Dumont, M. G., Bell, N. G. A., Artz, R. R. E., Bardgett, R., Andersen, R., Hutchinson, S. M., Page, S. E., Thom, T. J., Burn, W. & Evans, M. G., 2 Chwef 2023, Yn: Mires and Peat. 29, 36 t., 02.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  6. Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics

    A., M. A., C., T. B., S., W. A., Mark, B. & I., G. R., 5 Gorff 2017, Yn: mBio. 8, 4

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  7. Cyhoeddwyd

    Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database

    Jones, B., Goodall, T., George, P. B. L., Gweon, H. S., Puissant, J., Read, D. S., Emmett, B., Robinson, D. A., Jones, D. L. & Griffiths, R. I., 19 Gorff 2021, Yn: Frontiers in Microbiology. 12, 682886.

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  8. Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

    Smith, P., Cotrufo, M. F., Rumpel, C., Paustian, K., Kuikman, P. J., Elliott, J. A., McDowell, R., Griffiths, R. I., Asakawa, S., Bustamante, M., House, J. I., Sobocká, J., Harper, R., Pan, G., West, P. C., Gerber, J. S., Clark, J. M., Adhya, T., Scholes, R. J. & Scholes, M. C., 19 Tach 2015, Yn: SOIL. 1, 2, t. 665-685 21 t.

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  9. Catchment-scale biogeography of riverine bacterioplankton

    Read, D. S., Gweon, H. S., Bowes, M. J., Newbold, L. K., Field, D., Bailey, M. J. & Griffiths, R. I., Chwef 2015, Yn: The ISME Journal. 9, 2, t. 516-526 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  10. Climate change alters temporal dynamics of alpine soil microbial functioning and biogeochemical cycling via earlier snowmelt

    Broadbent, A. A. D., Snell, H. S. K., Michas, A., Pritchard, W. J., Newbold, L., Cordero, I., Goodall, T., Schallhart, N., Kaufmann, R., Griffiths, R. I., Schloter, M., Bahn, M. & Bardgett, R. D., Awst 2021, Yn: The ISME Journal. 15, 8, t. 2264-2275 12 t.

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  11. Cyhoeddwyd

    Climate change disrupts the seasonal coupling of plant and soil microbial nutrient cycling in an alpine ecosystem

    Broadbent, A. A. D., Newbold, L. K., Pritchard, W. J., Michas, A., Goodall, T., Cordero, I., Giunta, A., Snell, H. S. K., Pepper, V. V. L. H., Grant, H. K., Soto, D. X., Kaufmann, R., Schloter, M., Griffiths, R. I., Bahn, M. & Bardgett, R. D., 30 Maw 2024, Yn: Global Change Biology. 30, 3, t. e17245

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  12. Closely related protist strains have different grazing impacts on natural bacterial communities

    Glücksman, E., Bell, T., Griffiths, R. I. & Bass, D., 3 Rhag 2010, Yn: Environmental Microbiology. 12, 12, t. 3105-3113 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  13. Cyhoeddwyd

    Co-located ecological data for exploring top- and subsoil carbon dynamics across grassland-woodland contrasts

    Reinsch, S., Lebron, I., Brentegani, M., Brooks, M., Busi, S. B., Cagnarini, C., Cooper, D., Day, J., Emmett, B. A., Fitos, E., Goodall, T., Griffiths, R., Jones, B., Keenan, P., Keith, A., Lopes-Mazzetto, J. M., Mason, K. E., Pallett, D., Pereira, M. G., Pinder, A., Robinson, D. A., Smart, S. M., Thomas, A., Benham, S., Vanguelova, E. & Cosby, B. J., 9 Mai 2024, Yn: Scientific data. 11, 1, 478.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  14. Comparison of greenhouse gas fluxes from tropical forests and oil palm plantations on mineral soil

    Drewer, J., Leduning, M. M., Griffiths, R. I., Goodall, T., Levy, P. E., Cowan, N., Comynn-Platt, E., Hayman, G., Sentian, J., Majalap, N. & Skiba, U. M., 4 Maw 2021, Yn: Biogeosciences. 18, 5, t. 1559-1575 17 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  15. Cyhoeddwyd

    Detecting macroecological patterns in bacterial communities across independent studies of global soils

    Ramirez, K. S., Knight, C. G., Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, T. E. A., Creer, S., Crowther, T. W., Davison, J., Delgado-Baquerizo, M., Dorrepaal, E., Elliott, D. R., Fox, G., Griffiths, R., Hale, C., Hartman, K., Houlden, A., Jones, D., Krab, E. J., Maestre, F. T., McGuire, K. L., Monteux, S., Orr, C. H., van der Putten, W. H., Roberts, I. S., Robinson, D., Rocca, J., Rowntree, J., Schlaeppi, K., Shepherd, M., Singh, B. K., Straathof, A., Talbot, J. M., Thion, C., van der Heijden, M. & de Vries, F. T., 2018, Yn: Nature Microbiology. 3, t. 189-196 8 t.

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  16. Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

    Dupont, A. Ö. C., Griffiths, R. I., Bell, T. & Bass, D., 15 Ion 2016, Yn: Environmental Microbiology. 18, 6, t. 2010-2024 15 t.

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  17. Cyhoeddwyd

    Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

    George, P., Lallias, D., Creer, S., Seaton, F., Kenny, J. G., Eccles, R. M., Griffiths, R., Lebron, I., Emmett, B., Robinson, D. & Jones, D. L., 7 Maw 2019, Yn: Nature Communications. 10, 1, t. 1107 1107.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  18. Ecological consequences of ingestion of Bacillus cereus on Bacillus thuringiensis infections and on the gut flora of a lepidopteran host

    Raymond, B., Lijek, R. S., Griffiths, R. I. & Bonsall, M. B., Medi 2008, Yn: Journal of Invertebrate Pathology. 99, 1, t. 103-111 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  19. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Creamer, R. E., Hannula, S. E., Leeuwen, J. P. V., Stone, D., Rutgers, M., Schmelz, R. M., Ruiter, P. C. D., Hendriksen, N. B., Bolger, T., Bouffaud, M. L., Buee, M., Carvalho, F., Costa, D., Dirilgen, T., Francisco, R., Griffiths, B. S., Griffiths, R., Martin, F., Silva, P. M. D., Mendes, S., Morais, P. V., Pereira, C., Philippot, L., Plassart, P., Redecker, D., Römbke, J., Sousa, J. P., Wouterse, M. & Lemanceau, P., Ion 2016, Yn: Applied Soil Ecology. 97, t. 112-124 13 t.

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  20. Effects of sieving, drying and rewetting upon soil bacterial community structure and respiration rates

    Thomson, B. C., Ostle, N. J., McNamara, N. P., Whiteley, A. S. & Griffiths, R. I., Hyd 2010, Yn: Journal of Microbiological Methods. 83, 1, t. 69-73 5 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  21. Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization

    Buckeridge, K. M., Mason, K. E., McNamara, N. P., Ostle, N., Puissant, J., Goodall, T., Griffiths, R. I., Stott, A. W. & Whitaker, J., 22 Hyd 2020, Yn: Communications Earth and Environment. 1, 1, 36.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  22. Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

    Plassart, P., Terrat, S., Thomson, B., Griffiths, R., Dequiedt, S., Lelievre, M., Regnier, T., Nowak, V., Mark, B., Lemanceau, P., Bispo, A., Chabbi, A., Maron, P.-A., Mougel, C. & Ranjard, L., 11 Medi 2012, Yn: PLoS ONE. 7, 9, t. 1-8 8 t.

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  23. Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community

    Padfield, D., Vujakovic, A., Paterson, S., Griffiths, R., Buckling, A. & Hesse, E., 3 Medi 2020, Yn: The ISME Journal. 14, 11, t. 2877-2889 13 t.

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  24. Field scale molecular analysis for the monitoring of bacterial community structures during on-site diesel bioremediation

    Ciric, L., Griffiths, R. I., Philp, J. C. & Whiteley, A. S., Gorff 2010, Yn: Bioresource technology . 101, 14, t. 5235-5241 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  25. Functional and compositional comparison of two activated sludge communities remediating coking effluent

    Manefield, M., Griffiths, R. I., Leigh, M. B., Fisher, R. & Whiteley, A. S., 25 Chwef 2005, Yn: Environmental Microbiology. 7, 5, t. 715-722 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  26. Global change pressures on soils from land use and management

    Smith, P., House, J. I., Bustamante, M., Sobocká, J., Harper, R., Pan, G., West, P. C., Clark, J. M., Adhya, T., Rumpel, C., Paustian, K., Kuikman, P., Cotrufo, M. F., Elliott, J. A., McDowell, R., Griffiths, R. I., Asakawa, S., Bondeau, A., Jain, A. K., Meersmans, J. & Pugh, T. A. M., Maw 2016, Yn: Global Change Biology. 22, 3, t. 1008-1028 21 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  27. Grassland biodiversity restoration increases resistance of carbon fluxes to drought

    Cole, A. J., Griffiths, R. I., Ward, S. E., Whitaker, J., Ostle, N. J. & Bardgett, R. D., 19 Ebr 2019, Yn: Journal of Applied Ecology. 56, 7, t. 1806-1816 11 t.

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  28. Harnessing rhizosphere microbiomes for drought-resilient crop production

    Vries, F. T. D., Griffiths, R. I., Knight, C. G., Nicolitch, O. & Williams, A., 17 Ebr 2020, Yn: Science. 368, 6488, t. 270-274 5 t.

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  29. Influence of depth and sampling time on bacterial community structure in an upland grassland soil

    Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G. & Bailey, M. J., Chwef 2003, Yn: Fems Microbiology Ecology. 43, 1, t. 35-43 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  30. Insights into the fate of a 13C labelled phenol pulse for stable isotope probing (SIP) experiments

    Manefield, M., Griffiths, R., McNamara, N. P., Sleep, D., Ostle, N. & Whiteley, A., Mai 2007, Yn: Journal of Microbiological Methods. 69, 2, t. 340-344 5 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  31. Cyhoeddwyd

    Land management shapes drought responses of dominant soil microbial taxa across grasslands

    Lavallee, J. M., Chomel, M., Alvarez Segura, N., de Castro, F., Goodall, T., Magilton, M., Rhymes, J. M., Delgado-Baquerizo, M., Griffiths, R. I., Baggs, E. M., Caruso, T., de Vries, F. T., Emmerson, M., Johnson, D. & Bardgett, R. D., 2 Ion 2024, Yn: Nature Communications. 15, 1, t. 29

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  32. Land use driven change in soil pH affects microbial carbon cycling processes

    Malik, A. A., Puissant, J., Buckeridge, K. M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H. S., Peyton, J. M., Mason, K. E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R. F., Ostle, N., Gleixner, G. & Griffiths, R. I., 4 Medi 2018, Yn: Nature Communications. 9, 1, 3591.

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  33. Legacy effects of drought on plant–soil feedbacks and plant–plant interactions

    Kaisermann, A., de Vries, F. T., Griffiths, R. I. & Bardgett, R. D., 16 Meh 2017, Yn: New Phytologist. 215, 4, t. 1413-1424 12 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  34. Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil

    Vos, M., Birkett, P. J., Birch, E., Griffiths, R. I. & Buckling, A., 14 Awst 2009, Yn: Science. 325, 5942, t. 833 1 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  35. Cyhoeddwyd

    Long term drought and warming alter soil bacterial and fungal communities in an upland heathland

    Seaton, F., Reinsch, S., Goodall, T., White, N., Jones, D. L., Griffiths, R., Creer, S., Smith, A., Emmett, B. A. & Robinson, D. A., Medi 2022, Yn: Ecosystems. 25, 6, t. 1279-1294 16 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  36. Long-term cattle grazing shifts the ecological state of forest soils

    Proesmans, W., Andrews, C., Gray, A., Griffiths, R., Keith, A., Nielsen, U. N., Spurgeon, D., Pywell, R., Emmett, B. & Vanbergen, A. J., Ebr 2022, Yn: Ecology and Evolution. 12, 4, e8786.

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  37. Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Griffiths, R. I., Thomson, B. C., Plassart, P., Gweon, H. S., Stone, D., Creamer, R. E., Lemanceau, P. & Bailey, M. J., Ion 2016, Yn: Applied Soil Ecology. 97, t. 61-68 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  38. Mapping natural capital: optimising the use of national scale datasets

    Henrys, P. A., Bee, E. J., Watkins, J. W., Smith, N. A. & Griffiths, R. I., Meh 2015, Yn: Ecography. 38, 6, t. 632-638 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  39. Niche specialization of terrestrial archaeal ammonia oxidizers

    Gubry-Rangin, C., Hai, B., Quince, C., Engel, M., Thomson, B. C., James, P., Schloter, M., Griffiths, R. I., Prosser, J. I. & Nicol, G. W., 8 Rhag 2011, Yn: Proceedings of the National Academy of Sciences. 108, 52, t. 21206-21211 6 t.

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  40. Nutrient Source and Mycorrhizal Association jointly alters Soil Microbial Communities that shape Plant-Rhizosphere-Soil Carbon-Nutrient Flows

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., 19 Gorff 2020, Yn: bioRxiv.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  41. PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

    Gweon, H. S., Oliver, A., Taylor, J., Booth, T., Gibbs, M., Read, D. S., Griffiths, R. I. & Schonrogge, K., 22 Ebr 2015, Yn: Methods in Ecology and Evolution. 6, 8, t. 973-980 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  42. Persistence of dissolved organic matter explained by molecular changes during its passage through soil

    Roth, V.-N., Lange, M., Simon, C., Hertkorn, N., Bucher, S., Goodall, T., Griffiths, R. I., Mellado-Vázquez, P. G., Mommer, L., Oram, N. J., Weigelt, A., Dittmar, T. & Gleixner, G., 5 Awst 2019, Yn: Nature Geoscience. 12, 9, t. 755-761 7 t.

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  43. Physiological and Community Responses of Established Grassland Bacterial Populations to Water Stress

    I., G. R., S., W. A., G., O. A. & J., B. M., Rhag 2003, Yn: Applied and Environmental Microbiology. 69, 12, t. 6961-6968 8 t.

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  44. Plant diversity increases soil microbial activity and soil carbon storage

    Lange, M., Eisenhauer, N., Sierra, C. A., Bessler, H., Engels, C., Griffiths, R. I., Mellado-Vázquez, P. G., Malik, A. A., Roy, J., Scheu, S., Steinbeiss, S., Thomson, B. C., Trumbore, S. E. & Gleixner, G., 7 Ebr 2015, Yn: Nature Communications. 6, 1, 6707.

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  45. Plant soil interactions alter carbon cycling in an upland grassland soil

    Thomson, B., Ostle, N., McNamara, N., Oakley, S., Whiteley, A., Bailey, M. & Griffiths, R., 10 Medi 2013, Yn: Frontiers in Microbiology. 4

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  46. Plants with arbuscular mycorrhizal fungi efficiently acquire Nitrogen from substrate additions by shaping the decomposer community composition and their net plant carbon demand

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., Meh 2022, Yn: Plant and Soil. 475, 1, t. 473-490 18 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  47. Protists have divergent effects on bacterial diversity along a productivity gradient

    Bell, T., Bonsall, M. B., Buckling, A., Whiteley, A. S., Goodall, T. & Griffiths, R. I., 10 Maw 2010, Yn: Biology letters. 6, 5, t. 639-642 4 t.

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  48. RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny

    Mike, M., S., W. A., I., G. R. & J., B. M., Tach 2002, Yn: Applied and Environmental Microbiology. 68, 11, t. 5367-5373 7 t.

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  49. Raman Microscopic Analysis of Single Microbial Cells: Analytical Chemistry

    Huang, W. E., Griffiths, R. I., Thompson, I. P., Bailey, M. J. & Whiteley, A. S., 2004, Yn: Analytical Chemistry. 76, 15, t. 4452-4458 7 t.

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  50. Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function

    Huang, W. E., Stoecker, K., Griffiths, R., Newbold, L., Daims, H., Whiteley, A. S. & Wagner, M., 15 Meh 2007, Yn: Environmental Microbiology. 9, 8, t. 1878-1889 12 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  51. Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition

    I., G. R., S., W. A., G., O. A. & J., B. M., Rhag 2000, Yn: Applied and Environmental Microbiology. 66, 12, t. 5488-5491 4 t.

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