Dr Robert Griffiths

Athro mewn Microbioleg Amgylcheddol

Contact info

Rob Griffiths is an environmental microbiologist whose research focuses on understanding the "natural" and human associated drivers of microbial biodiversity, and understanding the role of microbiomes in environmental health. He uses molecular, biogeochemical and data-driven approaches to uncover fundamental ecological processes operating on microbial communities and impacting functional outcomes.

  1. Erthygl › Ymchwil › Adolygwyd gan gymheiriaid
  2. 13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere

    Griffiths, R. I., Manefield, M., Ostle, N., McNamara, N., O'Donnell, A. G., Bailey, M. J. & Whiteley, A. S., Gorff 2004, Yn: Journal of Microbiological Methods. 58, 1, t. 119-129 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  3. A method of establishing a transect for biodiversity and ecosystem function monitoring across Europe: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Stone, D., Blomkvist, P., Hendriksen, N. B., Bonkowski, M., Jørgensen, H. B., Carvalho, F., Dunbar, M. B., Gardi, C., Geisen, S., Griffiths, R., Hug, A. S., Jensen, J., Laudon, H., Mendes, S., Morais, P. V., Orgiazzi, A., Plassart, P., Römbke, J., Rutgers, M., Schmelz, R. M., Sousa, J. P., Steenbergen, E., Suhadolc, M., Winding, A., Zupan, M., Lemanceau, P. & Creamer, R. E., Ion 2016, Yn: Applied Soil Ecology. 97, t. 3-11 9 t.

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  4. Analysis of the microbial functional diversity within water-stressed soil communities by flow cytometric analysis and CTC+ cell sorting

    Whiteley, A. S., Griffiths, R. I. & Bailey, M. J., Awst 2003, Yn: Journal of Microbiological Methods. 54, 2, t. 257-267 11 t.

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  5. Aspects of microbial communities in peatland carbon cycling under changing climate and land use pressures

    Robinson, C., Ritson, J., Alderson, D., Malik, A. A., Griffiths, R. I., Heinemeyer, A., Gallego-Sala, A. V., Quillet, A., Robroek, B. J. M., Evans, C., Chandler, D. M., Elliott, D. R., Shuttleworth, E., Lilleskov, E. A., Kitson, E., Cox, F., Worrall, F., Clay, G., Crosher, I., Pratscher, J., Bird, J., Walker, J., Belyea, L. R., Dumont, M. G., Bell, N. G. A., Artz, R. R. E., Bardgett, R., Andersen, R., Hutchinson, S. M., Page, S. E., Thom, T. J., Burn, W. & Evans, M. G., 2 Chwef 2023, Yn: Mires and Peat. 29, 36 t., 02.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  6. Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics

    A., M. A., C., T. B., S., W. A., Mark, B. & I., G. R., 5 Gorff 2017, Yn: mBio. 8, 4

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  7. Cyhoeddwyd

    Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database

    Jones, B., Goodall, T., George, P. B. L., Gweon, H. S., Puissant, J., Read, D. S., Emmett, B., Robinson, D. A., Jones, D. L. & Griffiths, R. I., 19 Gorff 2021, Yn: Frontiers in Microbiology. 12, 682886.

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  8. Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

    Smith, P., Cotrufo, M. F., Rumpel, C., Paustian, K., Kuikman, P. J., Elliott, J. A., McDowell, R., Griffiths, R. I., Asakawa, S., Bustamante, M., House, J. I., Sobocká, J., Harper, R., Pan, G., West, P. C., Gerber, J. S., Clark, J. M., Adhya, T., Scholes, R. J. & Scholes, M. C., 19 Tach 2015, Yn: SOIL. 1, 2, t. 665-685 21 t.

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  9. Catchment-scale biogeography of riverine bacterioplankton

    Read, D. S., Gweon, H. S., Bowes, M. J., Newbold, L. K., Field, D., Bailey, M. J. & Griffiths, R. I., Chwef 2015, Yn: The ISME Journal. 9, 2, t. 516-526 11 t.

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  10. Climate change alters temporal dynamics of alpine soil microbial functioning and biogeochemical cycling via earlier snowmelt

    Broadbent, A. A. D., Snell, H. S. K., Michas, A., Pritchard, W. J., Newbold, L., Cordero, I., Goodall, T., Schallhart, N., Kaufmann, R., Griffiths, R. I., Schloter, M., Bahn, M. & Bardgett, R. D., Awst 2021, Yn: The ISME Journal. 15, 8, t. 2264-2275 12 t.

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  11. Cyhoeddwyd

    Climate change disrupts the seasonal coupling of plant and soil microbial nutrient cycling in an alpine ecosystem

    Broadbent, A. A. D., Newbold, L. K., Pritchard, W. J., Michas, A., Goodall, T., Cordero, I., Giunta, A., Snell, H. S. K., Pepper, V. V. L. H., Grant, H. K., Soto, D. X., Kaufmann, R., Schloter, M., Griffiths, R. I., Bahn, M. & Bardgett, R. D., 30 Maw 2024, Yn: Global Change Biology. 30, 3, t. e17245

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  12. Closely related protist strains have different grazing impacts on natural bacterial communities

    Glücksman, E., Bell, T., Griffiths, R. I. & Bass, D., 3 Rhag 2010, Yn: Environmental Microbiology. 12, 12, t. 3105-3113 9 t.

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  13. Cyhoeddwyd

    Co-located ecological data for exploring top- and subsoil carbon dynamics across grassland-woodland contrasts

    Reinsch, S., Lebron, I., Brentegani, M., Brooks, M., Busi, S. B., Cagnarini, C., Cooper, D., Day, J., Emmett, B. A., Fitos, E., Goodall, T., Griffiths, R. I., Jones, B., Keenan, P., Keith, A., Lopes-Mazzetto, J. M., Mason, K. E., Pallett, D., Pereira, M. G., Pinder, A., Robinson, D. A., Smart, S. M., Thomas, A., Benham, S., Vanguelova, E. & Cosby, B. J., 9 Mai 2024, Yn: Scientific data. 11, 1, t. 478 478.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  14. Comparison of greenhouse gas fluxes from tropical forests and oil palm plantations on mineral soil

    Drewer, J., Leduning, M. M., Griffiths, R. I., Goodall, T., Levy, P. E., Cowan, N., Comynn-Platt, E., Hayman, G., Sentian, J., Majalap, N. & Skiba, U. M., 4 Maw 2021, Yn: Biogeosciences. 18, 5, t. 1559-1575 17 t.

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  15. Cyhoeddwyd

    Detecting macroecological patterns in bacterial communities across independent studies of global soils

    Ramirez, K. S., Knight, C. G., Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, T. E. A., Creer, S., Crowther, T. W., Davison, J., Delgado-Baquerizo, M., Dorrepaal, E., Elliott, D. R., Fox, G., Griffiths, R., Hale, C., Hartman, K., Houlden, A., Jones, D., Krab, E. J., Maestre, F. T., McGuire, K. L., Monteux, S., Orr, C. H., van der Putten, W. H., Roberts, I. S., Robinson, D., Rocca, J., Rowntree, J., Schlaeppi, K., Shepherd, M., Singh, B. K., Straathof, A., Talbot, J. M., Thion, C., van der Heijden, M. & de Vries, F. T., 2018, Yn: Nature Microbiology. 3, t. 189-196 8 t.

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  16. Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

    Dupont, A. Ö. C., Griffiths, R. I., Bell, T. & Bass, D., 15 Ion 2016, Yn: Environmental Microbiology. 18, 6, t. 2010-2024 15 t.

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  17. Cyhoeddwyd

    Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

    George, P., Lallias, D., Creer, S., Seaton, F., Kenny, J. G., Eccles, R. M., Griffiths, R., Lebron, I., Emmett, B., Robinson, D. & Jones, D. L., 7 Maw 2019, Yn: Nature Communications. 10, 1, t. 1107 1107.

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  18. Ecological consequences of ingestion of Bacillus cereus on Bacillus thuringiensis infections and on the gut flora of a lepidopteran host

    Raymond, B., Lijek, R. S., Griffiths, R. I. & Bonsall, M. B., Medi 2008, Yn: Journal of Invertebrate Pathology. 99, 1, t. 103-111 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  19. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Creamer, R. E., Hannula, S. E., Leeuwen, J. P. V., Stone, D., Rutgers, M., Schmelz, R. M., Ruiter, P. C. D., Hendriksen, N. B., Bolger, T., Bouffaud, M. L., Buee, M., Carvalho, F., Costa, D., Dirilgen, T., Francisco, R., Griffiths, B. S., Griffiths, R., Martin, F., Silva, P. M. D., Mendes, S., Morais, P. V., Pereira, C., Philippot, L., Plassart, P., Redecker, D., Römbke, J., Sousa, J. P., Wouterse, M. & Lemanceau, P., Ion 2016, Yn: Applied Soil Ecology. 97, t. 112-124 13 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  20. Effects of acidity on dissolved organic carbon in organic soil extracts, pore water and surface litters

    Pschenyckyj, C. M., Clark, J. M., Shaw, L. J., Griffiths, R. I. & Evans, C. D., 10 Chwef 2020, Yn: Science of the Total Environment. 703, t. 135585

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  21. Effects of sieving, drying and rewetting upon soil bacterial community structure and respiration rates

    Thomson, B. C., Ostle, N. J., McNamara, N. P., Whiteley, A. S. & Griffiths, R. I., Hyd 2010, Yn: Journal of Microbiological Methods. 83, 1, t. 69-73 5 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  22. Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization

    Buckeridge, K. M., Mason, K. E., McNamara, N. P., Ostle, N., Puissant, J., Goodall, T., Griffiths, R. I., Stott, A. W. & Whitaker, J., 22 Hyd 2020, Yn: Communications Earth and Environment. 1, 1, 36.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  23. Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

    Plassart, P., Terrat, S., Thomson, B., Griffiths, R., Dequiedt, S., Lelievre, M., Regnier, T., Nowak, V., Mark, B., Lemanceau, P., Bispo, A., Chabbi, A., Maron, P.-A., Mougel, C. & Ranjard, L., 11 Medi 2012, Yn: PLoS ONE. 7, 9, t. 1-8 8 t.

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  24. Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community

    Padfield, D., Vujakovic, A., Paterson, S., Griffiths, R., Buckling, A. & Hesse, E., 3 Medi 2020, Yn: The ISME Journal. 14, 11, t. 2877-2889 13 t.

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  25. Field scale molecular analysis for the monitoring of bacterial community structures during on-site diesel bioremediation

    Ciric, L., Griffiths, R. I., Philp, J. C. & Whiteley, A. S., Gorff 2010, Yn: Bioresource technology . 101, 14, t. 5235-5241 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  26. Functional and compositional comparison of two activated sludge communities remediating coking effluent

    Manefield, M., Griffiths, R. I., Leigh, M. B., Fisher, R. & Whiteley, A. S., 25 Chwef 2005, Yn: Environmental Microbiology. 7, 5, t. 715-722 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  27. Global change pressures on soils from land use and management

    Smith, P., House, J. I., Bustamante, M., Sobocká, J., Harper, R., Pan, G., West, P. C., Clark, J. M., Adhya, T., Rumpel, C., Paustian, K., Kuikman, P., Cotrufo, M. F., Elliott, J. A., McDowell, R., Griffiths, R. I., Asakawa, S., Bondeau, A., Jain, A. K., Meersmans, J. & Pugh, T. A. M., Maw 2016, Yn: Global Change Biology. 22, 3, t. 1008-1028 21 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  28. Grassland biodiversity restoration increases resistance of carbon fluxes to drought

    Cole, A. J., Griffiths, R. I., Ward, S. E., Whitaker, J., Ostle, N. J. & Bardgett, R. D., 19 Ebr 2019, Yn: Journal of Applied Ecology. 56, 7, t. 1806-1816 11 t.

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  29. Harnessing rhizosphere microbiomes for drought-resilient crop production

    Vries, F. T. D., Griffiths, R. I., Knight, C. G., Nicolitch, O. & Williams, A., 17 Ebr 2020, Yn: Science. 368, 6488, t. 270-274 5 t.

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  30. Influence of depth and sampling time on bacterial community structure in an upland grassland soil

    Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G. & Bailey, M. J., Chwef 2003, Yn: Fems Microbiology Ecology. 43, 1, t. 35-43 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  31. Insights into the fate of a 13C labelled phenol pulse for stable isotope probing (SIP) experiments

    Manefield, M., Griffiths, R., McNamara, N. P., Sleep, D., Ostle, N. & Whiteley, A., Mai 2007, Yn: Journal of Microbiological Methods. 69, 2, t. 340-344 5 t.

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  32. Cyhoeddwyd

    Land management shapes drought responses of dominant soil microbial taxa across grasslands

    Lavallee, J. M., Chomel, M., Alvarez Segura, N., de Castro, F., Goodall, T., Magilton, M., Rhymes, J. M., Delgado-Baquerizo, M., Griffiths, R. I., Baggs, E. M., Caruso, T., de Vries, F. T., Emmerson, M., Johnson, D. & Bardgett, R. D., 2 Ion 2024, Yn: Nature Communications. 15, 1, t. 29

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  33. Land use driven change in soil pH affects microbial carbon cycling processes

    Malik, A. A., Puissant, J., Buckeridge, K. M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H. S., Peyton, J. M., Mason, K. E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R. F., Ostle, N., Gleixner, G. & Griffiths, R. I., 4 Medi 2018, Yn: Nature Communications. 9, 1, 3591.

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  34. E-gyhoeddi cyn argraffu

    Land use effects on soil microbiome composition and traits with consequences for soil carbon cycling

    Cole, L., Goodall, T., Jehmlich, N., Griffiths, R. I., Gleixner, G., Gubry-Rangin, C. & Malik, A. A., 1 Ion 2025, Yn: ISME Communications. 4, 1, t. ycae116

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  35. Legacy effects of drought on plant–soil feedbacks and plant–plant interactions

    Kaisermann, A., de Vries, F. T., Griffiths, R. I. & Bardgett, R. D., 16 Meh 2017, Yn: New Phytologist. 215, 4, t. 1413-1424 12 t.

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  36. Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil

    Vos, M., Birkett, P. J., Birch, E., Griffiths, R. I. & Buckling, A., 14 Awst 2009, Yn: Science. 325, 5942, t. 833 1 t.

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  37. Cyhoeddwyd

    Long term drought and warming alter soil bacterial and fungal communities in an upland heathland

    Seaton, F., Reinsch, S., Goodall, T., White, N., Jones, D. L., Griffiths, R., Creer, S., Smith, A., Emmett, B. A. & Robinson, D. A., Medi 2022, Yn: Ecosystems. 25, 6, t. 1279-1294 16 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  38. Long-term cattle grazing shifts the ecological state of forest soils

    Proesmans, W., Andrews, C., Gray, A., Griffiths, R., Keith, A., Nielsen, U. N., Spurgeon, D., Pywell, R., Emmett, B. & Vanbergen, A. J., Ebr 2022, Yn: Ecology and Evolution. 12, 4, e8786.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  39. Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Griffiths, R. I., Thomson, B. C., Plassart, P., Gweon, H. S., Stone, D., Creamer, R. E., Lemanceau, P. & Bailey, M. J., Ion 2016, Yn: Applied Soil Ecology. 97, t. 61-68 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  40. Mapping natural capital: optimising the use of national scale datasets

    Henrys, P. A., Bee, E. J., Watkins, J. W., Smith, N. A. & Griffiths, R. I., Meh 2015, Yn: Ecography. 38, 6, t. 632-638 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  41. E-gyhoeddi cyn argraffu

    Microbial and mineral interactions decouple litter quality from soil organic matter formation

    Elias, D. M. O., Mason, K. E., Goodall, T., Taylor, A., Zhao, P., Otero-Fariña, A., Chen, H., Peacock, C. L., Ostle, N. J., Griffiths, R. I., Chapman, P. J., Holden, J., Banwart, S., McNamara, N. P. & Whitaker, J., 20 Tach 2024, (E-gyhoeddi cyn argraffu) Yn: Nature Communications. 15, 1, t. 10063 1 t.

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  42. Niche specialization of terrestrial archaeal ammonia oxidizers

    Gubry-Rangin, C., Hai, B., Quince, C., Engel, M., Thomson, B. C., James, P., Schloter, M., Griffiths, R. I., Prosser, J. I. & Nicol, G. W., 8 Rhag 2011, Yn: Proceedings of the National Academy of Sciences. 108, 52, t. 21206-21211 6 t.

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  43. Nutrient Source and Mycorrhizal Association jointly alters Soil Microbial Communities that shape Plant-Rhizosphere-Soil Carbon-Nutrient Flows

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., 19 Gorff 2020, Yn: bioRxiv.

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  44. PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

    Gweon, H. S., Oliver, A., Taylor, J., Booth, T., Gibbs, M., Read, D. S., Griffiths, R. I. & Schonrogge, K., 22 Ebr 2015, Yn: Methods in Ecology and Evolution. 6, 8, t. 973-980 8 t.

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  45. Persistence of dissolved organic matter explained by molecular changes during its passage through soil

    Roth, V.-N., Lange, M., Simon, C., Hertkorn, N., Bucher, S., Goodall, T., Griffiths, R. I., Mellado-Vázquez, P. G., Mommer, L., Oram, N. J., Weigelt, A., Dittmar, T. & Gleixner, G., 5 Awst 2019, Yn: Nature Geoscience. 12, 9, t. 755-761 7 t.

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  46. Physiological and Community Responses of Established Grassland Bacterial Populations to Water Stress

    I., G. R., S., W. A., G., O. A. & J., B. M., Rhag 2003, Yn: Applied and Environmental Microbiology. 69, 12, t. 6961-6968 8 t.

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  47. Plant diversity increases soil microbial activity and soil carbon storage

    Lange, M., Eisenhauer, N., Sierra, C. A., Bessler, H., Engels, C., Griffiths, R. I., Mellado-Vázquez, P. G., Malik, A. A., Roy, J., Scheu, S., Steinbeiss, S., Thomson, B. C., Trumbore, S. E. & Gleixner, G., 7 Ebr 2015, Yn: Nature Communications. 6, 1, 6707.

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  48. Plant soil interactions alter carbon cycling in an upland grassland soil

    Thomson, B., Ostle, N., McNamara, N., Oakley, S., Whiteley, A., Bailey, M. & Griffiths, R., 10 Medi 2013, Yn: Frontiers in Microbiology. 4

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  49. Plants with arbuscular mycorrhizal fungi efficiently acquire Nitrogen from substrate additions by shaping the decomposer community composition and their net plant carbon demand

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., Meh 2022, Yn: Plant and Soil. 475, 1, t. 473-490 18 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  50. Protists have divergent effects on bacterial diversity along a productivity gradient

    Bell, T., Bonsall, M. B., Buckling, A., Whiteley, A. S., Goodall, T. & Griffiths, R. I., 10 Maw 2010, Yn: Biology letters. 6, 5, t. 639-642 4 t.

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  51. RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny

    Mike, M., S., W. A., I., G. R. & J., B. M., Tach 2002, Yn: Applied and Environmental Microbiology. 68, 11, t. 5367-5373 7 t.

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