Dr Robert Griffiths

Athro mewn Microbioleg Amgylcheddol

Contact info

Rob Griffiths is an environmental microbiologist whose research focuses on understanding the "natural" and human associated drivers of microbial biodiversity, and understanding the role of microbiomes in environmental health. He uses molecular, biogeochemical and data-driven approaches to uncover fundamental ecological processes operating on microbial communities and impacting functional outcomes.

  1. Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics

    A., M. A., C., T. B., S., W. A., Mark, B. & I., G. R., 5 Gorff 2017, Yn: mBio. 8, 4

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  2. Microbial biodiversity and ecosystem functioning under controlled conditions and in the wild: Biodiversity, Ecosystem Functioning, and Human Wellbeing: An Ecological and Economic Perspective

    Bell, T., Gessner, M. O., Griffiths, R. I., McLaren, J. R., Morin, P. J., van der Heijden, M., van der Putten, W. H., Naeem, S. (Golygydd), Bunker, D. E. (Golygydd), Hector, A. (Golygydd), Loreau, M. (Golygydd) & Perrings, C. (Golygydd), Gorff 2009, Biodiversity, Ecosystem Functioning, and Human Wellbeing: An Ecological and Economic . Oxford University Press USA, t. 121-133

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  3. Protists have divergent effects on bacterial diversity along a productivity gradient

    Bell, T., Bonsall, M. B., Buckling, A., Whiteley, A. S., Goodall, T. & Griffiths, R. I., 10 Maw 2010, Yn: Biology letters. 6, 5, t. 639-642 4 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  4. Climate change alters temporal dynamics of alpine soil microbial functioning and biogeochemical cycling via earlier snowmelt

    Broadbent, A. A. D., Snell, H. S. K., Michas, A., Pritchard, W. J., Newbold, L., Cordero, I., Goodall, T., Schallhart, N., Kaufmann, R., Griffiths, R. I., Schloter, M., Bahn, M. & Bardgett, R. D., Awst 2021, Yn: The ISME Journal. 15, 8, t. 2264-2275 12 t.

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  5. Cyhoeddwyd

    Climate change disrupts the seasonal coupling of plant and soil microbial nutrient cycling in an alpine ecosystem

    Broadbent, A. A. D., Newbold, L. K., Pritchard, W. J., Michas, A., Goodall, T., Cordero, I., Giunta, A., Snell, H. S. K., Pepper, V. V. L. H., Grant, H. K., Soto, D. X., Kaufmann, R., Schloter, M., Griffiths, R. I., Bahn, M. & Bardgett, R. D., 30 Maw 2024, Yn: Global Change Biology. 30, 3, t. e17245

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  6. Shrub expansion modulates belowground impacts of changing snow conditions in alpine grasslands

    Broadbent, A. A. D., Bahn, M., Pritchard, W. J., Newbold, L. K., Goodall, T., Guinta, A., Snell, H. S. K., Cordero, I., Michas, A., Grant, H. K., Soto, D. X., Kaufmann, R., Schloter, M., Griffiths, R. I. & Bardgett, R. D., 1 Ion 2022, Yn: Ecology Letters. 25, 1, t. 52-64 13 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  7. Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization

    Buckeridge, K. M., Mason, K. E., McNamara, N. P., Ostle, N., Puissant, J., Goodall, T., Griffiths, R. I., Stott, A. W. & Whitaker, J., 22 Hyd 2020, Yn: Communications Earth and Environment. 1, 1, 36.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  8. Zones of influence for soil organic matter dynamics: A conceptual framework for data and models

    Cagnarini, C., Blyth, E., Emmett, B. A., Evans, C. D., Griffiths, R. I., Keith, A., Jones, L., Lebron, I., McNamara, N. P., Puissant, J., Reinsch, S., Robinson, D. A., Rowe, E. C., Thomas, A. R. C., Smart, S. M., Whitaker, J. & Cosby, B. J., 6 Awst 2019, Yn: Global Change Biology. 25, 12, t. 3996-4007 12 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  9. Plants with arbuscular mycorrhizal fungi efficiently acquire Nitrogen from substrate additions by shaping the decomposer community composition and their net plant carbon demand

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., Meh 2022, Yn: Plant and Soil. 475, 1, t. 473-490 18 t.

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  10. Nutrient Source and Mycorrhizal Association jointly alters Soil Microbial Communities that shape Plant-Rhizosphere-Soil Carbon-Nutrient Flows

    Chowdhury, S., Lange, M., Malik, A. A., Goodall, T., Huang, J., Griffiths, R. I. & Gleixner, G., 19 Gorff 2020, Yn: bioRxiv.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  11. Field scale molecular analysis for the monitoring of bacterial community structures during on-site diesel bioremediation

    Ciric, L., Griffiths, R. I., Philp, J. C. & Whiteley, A. S., Gorff 2010, Yn: Bioresource technology . 101, 14, t. 5235-5241 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  12. Cyhoeddwyd

    Land use effects on soil microbiome composition and traits with consequences for soil carbon cycling

    Cole, L., Goodall, T., Jehmlich, N., Griffiths, R. I., Gleixner, G., Gubry-Rangin, C. & Malik, A. A., 1 Ion 2025, Yn: ISME Communications. 4, 1, t. ycae116

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  13. Grassland biodiversity restoration increases resistance of carbon fluxes to drought

    Cole, A. J., Griffiths, R. I., Ward, S. E., Whitaker, J., Ostle, N. J. & Bardgett, R. D., 19 Ebr 2019, Yn: Journal of Applied Ecology. 56, 7, t. 1806-1816 11 t.

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  14. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Creamer, R. E., Hannula, S. E., Leeuwen, J. P. V., Stone, D., Rutgers, M., Schmelz, R. M., Ruiter, P. C. D., Hendriksen, N. B., Bolger, T., Bouffaud, M. L., Buee, M., Carvalho, F., Costa, D., Dirilgen, T., Francisco, R., Griffiths, B. S., Griffiths, R., Martin, F., Silva, P. M. D., Mendes, S., Morais, P. V., Pereira, C., Philippot, L., Plassart, P., Redecker, D., Römbke, J., Sousa, J. P., Wouterse, M. & Lemanceau, P., Ion 2016, Yn: Applied Soil Ecology. 97, t. 112-124 13 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  15. Comparison of greenhouse gas fluxes from tropical forests and oil palm plantations on mineral soil

    Drewer, J., Leduning, M. M., Griffiths, R. I., Goodall, T., Levy, P. E., Cowan, N., Comynn-Platt, E., Hayman, G., Sentian, J., Majalap, N. & Skiba, U. M., 4 Maw 2021, Yn: Biogeosciences. 18, 5, t. 1559-1575 17 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  16. Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

    Dupont, A. Ö. C., Griffiths, R. I., Bell, T. & Bass, D., 15 Ion 2016, Yn: Environmental Microbiology. 18, 6, t. 2010-2024 15 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  17. E-gyhoeddi cyn argraffu

    Microbial and mineral interactions decouple litter quality from soil organic matter formation

    Elias, D. M. O., Mason, K. E., Goodall, T., Taylor, A., Zhao, P., Otero-Fariña, A., Chen, H., Peacock, C. L., Ostle, N. J., Griffiths, R. I., Chapman, P. J., Holden, J., Banwart, S., McNamara, N. P. & Whitaker, J., 20 Tach 2024, (E-gyhoeddi cyn argraffu) Yn: Nature Communications. 15, 1, t. 10063 1 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  18. Sustainable futures over the next decade are rooted in soil science

    Evans, D. L., Janes-Bassett, V., Borrelli, P., Chenu, C., Ferreira, C. S. S., Griffiths, R. I., Kalantari, Z., Keesstra, S., Lal, R., Panagos, P., Robinson, D. A., Seifollahi-Aghmiuni, S., Smith, P., Steenhuis, T. S., Thomas, A. & Visser, S. M., 19 Ion 2022, Yn: European Journal of Soil Science. 73, 1, t. e13145

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  19. The effect of root-associated microbes on plant growth and chemical defence traits across two contrasted elevations

    Formenti, L., Caggìa, V., Puissant, J., Goodall, T., Glauser, G., Griffiths, R. & Rasmann, S., 10 Ion 2021, Yn: Journal of Ecology. 109, 1, t. 38-50 13 t.

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  20. Cyhoeddwyd

    Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

    George, P., Lallias, D., Creer, S., Seaton, F., Kenny, J. G., Eccles, R. M., Griffiths, R., Lebron, I., Emmett, B., Robinson, D. & Jones, D. L., 7 Maw 2019, Yn: Nature Communications. 10, 1, t. 1107 1107.

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  21. Cyhoeddwyd

    Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation

    George, P. B. L., Fidler, D. B., Van Nostrand, J. D., Atkinson, J. A., Mooney, S. J., Creer, S., Griffiths, R. I., McDonald, J. E., Robinson, D. A. & Jones, D. L., 14 Medi 2021, Yn: Frontiers in Microbiology. 12, 735022.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  22. Closely related protist strains have different grazing impacts on natural bacterial communities

    Glücksman, E., Bell, T., Griffiths, R. I. & Bass, D., 3 Rhag 2010, Yn: Environmental Microbiology. 12, 12, t. 3105-3113 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  23. Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets: Soil biodiversity and ecosystem functions across Europe: A transect covering variations in bio-geographical zones, land use and soil properties

    Griffiths, R. I., Thomson, B. C., Plassart, P., Gweon, H. S., Stone, D., Creamer, R. E., Lemanceau, P. & Bailey, M. J., Ion 2016, Yn: Applied Soil Ecology. 97, t. 61-68 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  24. Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function

    Griffiths, B. S., Römbke, J., Schmelz, R. M., Scheffczyk, A., Faber, J. H., Bloem, J., Pérès, G., Cluzeau, D., Chabbi, A., Suhadolc, M., Sousa, J. P., Martins da Silva, P., Carvalho, F., Mendes, S., Morais, P., Francisco, R., Pereira, C., Bonkowski, M., Geisen, S., Bardgett, R. D., de Vries, F. T., Bolger, T., Dirilgen, T., Schmidt, O., Winding, A., Hendriksen, N. B., Johansen, A., Philippot, L., Plassart, P., Bru, D., Thomson, B., Griffiths, R. I., Bailey, M. J., Keith, A., Rutgers, M., Mulder, C., Hannula, S. E., Creamer, R. & Stone, D., Hyd 2016, Yn: Ecological Indicators. 69, t. 213-223 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  25. The functions and components of the Sourhope soil microbiota

    Griffiths, R. I., Bailey, M. J., McNamara, N. P. & Whiteley, A. S., Medi 2006, Yn: Applied Soil Ecology. 33, 2, t. 114-126 13 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  26. The bacterial biogeography of British soils

    Griffiths, R. I., Thomson, B. C., James, P., Bell, T., Bailey, M. & Whiteley, A. S., 20 Ebr 2011, Yn: Environmental Microbiology. 13, 6, t. 1642-1654 13 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  27. 13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere

    Griffiths, R. I., Manefield, M., Ostle, N., McNamara, N., O'Donnell, A. G., Bailey, M. J. & Whiteley, A. S., Gorff 2004, Yn: Journal of Microbiological Methods. 58, 1, t. 119-129 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  28. Influence of depth and sampling time on bacterial community structure in an upland grassland soil

    Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G. & Bailey, M. J., Chwef 2003, Yn: Fems Microbiology Ecology. 43, 1, t. 35-43 9 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  29. Niche specialization of terrestrial archaeal ammonia oxidizers

    Gubry-Rangin, C., Hai, B., Quince, C., Engel, M., Thomson, B. C., James, P., Schloter, M., Griffiths, R. I., Prosser, J. I. & Nicol, G. W., 8 Rhag 2011, Yn: Proceedings of the National Academy of Sciences. 108, 52, t. 21206-21211 6 t.

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  30. PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

    Gweon, H. S., Oliver, A., Taylor, J., Booth, T., Gibbs, M., Read, D. S., Griffiths, R. I. & Schonrogge, K., 22 Ebr 2015, Yn: Methods in Ecology and Evolution. 6, 8, t. 973-980 8 t.

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  31. Mapping natural capital: optimising the use of national scale datasets

    Henrys, P. A., Bee, E. J., Watkins, J. W., Smith, N. A. & Griffiths, R. I., Meh 2015, Yn: Ecography. 38, 6, t. 632-638 7 t.

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  32. Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function

    Huang, W. E., Stoecker, K., Griffiths, R., Newbold, L., Daims, H., Whiteley, A. S. & Wagner, M., 15 Meh 2007, Yn: Environmental Microbiology. 9, 8, t. 1878-1889 12 t.

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  33. Raman Microscopic Analysis of Single Microbial Cells: Analytical Chemistry

    Huang, W. E., Griffiths, R. I., Thompson, I. P., Bailey, M. J. & Whiteley, A. S., 2004, Yn: Analytical Chemistry. 76, 15, t. 4452-4458 7 t.

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  34. Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition

    I., G. R., S., W. A., G., O. A. & J., B. M., Rhag 2000, Yn: Applied and Environmental Microbiology. 66, 12, t. 5488-5491 4 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  35. Physiological and Community Responses of Established Grassland Bacterial Populations to Water Stress

    I., G. R., S., W. A., G., O. A. & J., B. M., Rhag 2003, Yn: Applied and Environmental Microbiology. 69, 12, t. 6961-6968 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  36. Cyhoeddwyd

    pH and exchangeable aluminum are major regulators of microbial energy flow and carbon use efficiency in soil microbial communities

    Jones, D. L., Cooledge, E., Hoyle, F., Griffiths, R. & Murphy, D., Tach 2019, Yn: Soil Biology and Biochemistry. 138, 107584.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  37. Cyhoeddwyd

    Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database

    Jones, B., Goodall, T., George, P. B. L., Gweon, H. S., Puissant, J., Read, D. S., Emmett, B., Robinson, D. A., Jones, D. L. & Griffiths, R. I., 19 Gorff 2021, Yn: Frontiers in Microbiology. 12, 682886.

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  38. Legacy effects of drought on plant–soil feedbacks and plant–plant interactions

    Kaisermann, A., de Vries, F. T., Griffiths, R. I. & Bardgett, R. D., 16 Meh 2017, Yn: New Phytologist. 215, 4, t. 1413-1424 12 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  39. Cyhoeddwyd

    Soil microbiomes show consistent and predictable responses to extreme events

    Knight, C. G., Nicolitch, O., Griffiths, R. I., Goodall, T., Jones, B., Weser, C., Langridge, H., Davison, J., Dellavalle, A., Eisenhauer, N., Gongalsky, K. B., Hector, A., Jardine, E., Kardol, P., Maestre, F. T., Schädler, M., Semchenko, M., Stevens, C., Tsiafouli, M. Α., Vilhelmsson, O., Wanek, W. & de Vries, F. T., 19 Rhag 2024, Yn: Nature. 636, 8043, t. 690-696 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  40. Plant diversity increases soil microbial activity and soil carbon storage

    Lange, M., Eisenhauer, N., Sierra, C. A., Bessler, H., Engels, C., Griffiths, R. I., Mellado-Vázquez, P. G., Malik, A. A., Roy, J., Scheu, S., Steinbeiss, S., Thomson, B. C., Trumbore, S. E. & Gleixner, G., 7 Ebr 2015, Yn: Nature Communications. 6, 1, 6707.

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  41. Cyhoeddwyd

    Land management shapes drought responses of dominant soil microbial taxa across grasslands

    Lavallee, J. M., Chomel, M., Alvarez Segura, N., de Castro, F., Goodall, T., Magilton, M., Rhymes, J. M., Delgado-Baquerizo, M., Griffiths, R. I., Baggs, E. M., Caruso, T., de Vries, F. T., Emmerson, M., Johnson, D. & Bardgett, R. D., 2 Ion 2024, Yn: Nature Communications. 15, 1, t. 29

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  42. Soil microbial communities with greater investment in resource acquisition have lower growth yield

    Malik, A. A., Puissant, J., Goodall, T., Allison, S. D. & Griffiths, R. I., Mai 2019, Yn: Soil Biology and Biochemistry. 132, t. 36-39 4 t.

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  43. Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling

    Malik, A. A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J., Vazquez, P. G. M., Jehmlich, N., von Bergen, M., Griffiths, R. I. & Gleixner, G., 9 Awst 2016, Yn: Frontiers in Microbiology. 7

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  44. Land use driven change in soil pH affects microbial carbon cycling processes

    Malik, A. A., Puissant, J., Buckeridge, K. M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H. S., Peyton, J. M., Mason, K. E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R. F., Ostle, N., Gleixner, G. & Griffiths, R. I., 4 Medi 2018, Yn: Nature Communications. 9, 1, 3591.

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  45. Rhizosphere bacterial carbon turnover is higher in nucleic acids than membrane lipids: implications for understanding soil carbon cycling

    Malik, A. A., Dannert, H., Griffiths, R. I., Thomson, B. C. & Gleixner, G., 9 Ebr 2015, Yn: Frontiers in Microbiology. 6

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  46. Linking microbial communities to soil carbon cycling under anthropogenic change using a trait-based framework

    Malik, A., Griffiths, R. & Allison, S., 4 Mai 2020.

    Allbwn ymchwil: Cyfraniad at gynhadleddPapur

  47. Stable Isotope Probing: A Critique of Its Role in Linking Phylogeny and Function

    Manefield, M., Griffiths, R., Bailey, M. J. & Whiteley, A. S., 2006, Nucleic Acids and Proteins in Soil. Nannipieri, P. & Smalla, K. (gol.). Springer, t. 205-216

    Allbwn ymchwil: Pennod mewn Llyfr/Adroddiad/Trafodion CynhadleddPennod

  48. Functional and compositional comparison of two activated sludge communities remediating coking effluent

    Manefield, M., Griffiths, R. I., Leigh, M. B., Fisher, R. & Whiteley, A. S., 25 Chwef 2005, Yn: Environmental Microbiology. 7, 5, t. 715-722 8 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  49. Insights into the fate of a 13C labelled phenol pulse for stable isotope probing (SIP) experiments

    Manefield, M., Griffiths, R., McNamara, N. P., Sleep, D., Ostle, N. & Whiteley, A., Mai 2007, Yn: Journal of Microbiological Methods. 69, 2, t. 340-344 5 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  50. The sensitivity of a forest soil microbial community to acute gamma-irradiation

    McNamara, N. P., Griffiths, R. I., Tabouret, A., Beresford, N. A., Bailey, M. J. & Whiteley, A. S., Hyd 2007, Yn: Applied Soil Ecology. 37, 1, t. 1-9 9 t.

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