Microplastics (MPs) can alter microbial communities and carbon (C) cycling in agricultural soils. However, the mechanism by which MPs affect the decomposition of microbe-driven soil organic matter remains unknown. We investigated the bacterial community succession and temporal turnover during soil organic matter decomposition in MP-amended paddy soils (none, low [0.01% w/w], or high [1% w/w]). We observed that MPs reduced the CO2 efflux rate on day 3 and subsequently promoted it on day 15 of incubation. This increased CO2 emission in MP-amended soil may be related to (i) enhanced hydrolase enzyme activities or; (ii) shifts in the Shannon diversity, positive group interactions, and temporal turnover rates (from 0.018 to 0.040). CO2 efflux was positively correlated (r > 0.8, p < 0.01) with Ruminiclostridium_1, Mobilitalea, Eubacterium xylanophilum, Sporomusa, Anaerobacteriu, Papillibacter, Syntrophomonadaceae, and Ruminococcaceae_UCG_013 abundance in soil with high MPs, indicating that these genera play important roles in soil organic C mineralization. These results demonstrate how microorganisms adapt to MPs and thus influence the C cycle in MP-polluted paddy ecosystems.