The anaerobic digestion of food waste for energy recovery produces a nutrient-rich digestate which is a valuable source of crop available nitrogen (N). As with any ‘new’ material being recycled to agricultural land it is important to develop best management practices that maximise crop available N supply, whilst minimising emissions to the environment. In this study, ammonia (NH3) and nitrous oxide (N2O) emissions to air and nitrate (NO3−) leaching losses to water following digestate, compost and livestock manure applications to agricultural land were measured at 3 sites in England and Wales. Ammonia emissions were greater from applications of food-based digestate (c.40% of total N applied) than from livestock slurry (c.30% of total N applied) due to its higher ammonium-N content (mean 5.6 kg/t compared with 1–2 kg/t for slurry) and elevated pH (mean 8.3 compared with 7.7 for slurry). Whilst bandspreading was effective at reducing NH3 emissions from slurry compared with surface broadcasting it was not found to be an effective mitigation option for food-based digestate in this study. The majority of the NH3 losses occurred within 6 h of spreading highlighting the importance of rapid soil incorporation as a method for reducing NH3 emissions. Nitrous oxide losses from food-based digestates were low, with emission factors all less than the IPCC default value of 1% (mean 0.45 ± 0.15%). Overwinter NO3− leaching losses from food-based digestate were similar to those from pig slurry, but much greater than from pig farmyard manure or compost. Both gaseous N losses and NO3− leaching from green and green/food composts were low, indicating that, in these terms, compost can be considered as an ‘environmentally benign’ material. These findings have been used in the development of best practice guidelines which provide a framework for the responsible use of digestates and composts in agriculture.