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Widespread introgression across a phylogeny of 155 Drosophila genomes

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Widespread introgression across a phylogeny of 155 Drosophila genomes. / Suvorov, Anton; Kim, Bernard Y.; Wang, Jeremy et al.
In: Current Biology, Vol. 32, No. 1, 10.01.2022, p. 111-123.

Research output: Contribution to journal › Article › peer-review

HarvardHarvard

Suvorov, A, Kim, BY, Wang, J, Armstrong, EE, Peede, D, D'Agostino, ERR, Price, DK, Waddell, P, Lang, M, Courtier-Orgogozo, V, David, JR, Petrov, D, Matute, DR, Schrider, DR & Comeault, A 2022, 'Widespread introgression across a phylogeny of 155 Drosophila genomes', Current Biology, vol. 32, no. 1, pp. 111-123. https://doi.org/10.1016/j.cub.2021.10.052

APA

Suvorov, A., Kim, B. Y., Wang, J., Armstrong, E. E., Peede, D., D'Agostino, E. R. R., Price, D. K., Waddell, P., Lang, M., Courtier-Orgogozo, V., David, J. R., Petrov, D., Matute, D. R., Schrider, D. R., & Comeault, A. (2022). Widespread introgression across a phylogeny of 155 Drosophila genomes. Current Biology, 32(1), 111-123. https://doi.org/10.1016/j.cub.2021.10.052

CBE

Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR, Price DK, Waddell P, Lang M, Courtier-Orgogozo V, et al. 2022. Widespread introgression across a phylogeny of 155 Drosophila genomes. Current Biology. 32(1):111-123. https://doi.org/10.1016/j.cub.2021.10.052

MLA

Suvorov, Anton et al. "Widespread introgression across a phylogeny of 155 Drosophila genomes". Current Biology. 2022, 32(1). 111-123. https://doi.org/10.1016/j.cub.2021.10.052

VancouverVancouver

Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR et al. Widespread introgression across a phylogeny of 155 Drosophila genomes. Current Biology. 2022 Jan 10;32(1):111-123. Epub 2021 Nov 16. doi: 10.1016/j.cub.2021.10.052

Author

Suvorov, Anton ; Kim, Bernard Y. ; Wang, Jeremy et al. / Widespread introgression across a phylogeny of 155 Drosophila genomes. In: Current Biology. 2022 ; Vol. 32, No. 1. pp. 111-123.

RIS

TY - JOUR

T1 - Widespread introgression across a phylogeny of 155 Drosophila genomes

AU - Suvorov, Anton

AU - Kim, Bernard Y.

AU - Wang, Jeremy

AU - Armstrong, Ellie E.

AU - Peede, David

AU - D'Agostino, Emmanuel R.R.

AU - Price, Donald K.

AU - Waddell, Peter

AU - Lang, Michael

AU - Courtier-Orgogozo, Virginie

AU - David, Jean R.

AU - Petrov, Dmitri

AU - Matute, Daniel R.

AU - Schrider, Daniel R.

AU - Comeault, Aaron

N1 - Copyright © 2021 Elsevier Inc. All rights reserved.

PY - 2022/1/10

Y1 - 2022/1/10

N2 - Genome-scale sequence data have invigorated the study of hybridization and introgression, particularly in animals. However, outside of a few notable cases, we lack systematic tests for introgression at a larger phylogenetic scale across entire clades. Here, we leverage 155 genome assemblies from 149 species to generate a fossil-calibrated phylogeny and conduct multilocus tests for introgression across 9 monophyletic radiations within the genus Drosophila. Using complementary phylogenomic approaches, we identify widespread introgression across the evolutionary history of Drosophila. Mapping gene-tree discordance onto the phylogeny revealed that both ancient and recent introgression has occurred across most of the 9 clades that we examined. Our results provide the first evidence of introgression occurring across the evolutionary history of Drosophila and highlight the need to continue to study the evolutionary consequences of hybridization and introgression in this genus and across the tree of life.

AB - Genome-scale sequence data have invigorated the study of hybridization and introgression, particularly in animals. However, outside of a few notable cases, we lack systematic tests for introgression at a larger phylogenetic scale across entire clades. Here, we leverage 155 genome assemblies from 149 species to generate a fossil-calibrated phylogeny and conduct multilocus tests for introgression across 9 monophyletic radiations within the genus Drosophila. Using complementary phylogenomic approaches, we identify widespread introgression across the evolutionary history of Drosophila. Mapping gene-tree discordance onto the phylogeny revealed that both ancient and recent introgression has occurred across most of the 9 clades that we examined. Our results provide the first evidence of introgression occurring across the evolutionary history of Drosophila and highlight the need to continue to study the evolutionary consequences of hybridization and introgression in this genus and across the tree of life.

KW - Phylogenomics

KW - gene flow

KW - introgression

KW - phylogenetic discordance

KW - reticulate evolution

U2 - 10.1016/j.cub.2021.10.052

DO - 10.1016/j.cub.2021.10.052

M3 - Article

C2 - 34788634

VL - 32

SP - 111

EP - 123

JO - Current Biology

JF - Current Biology

SN - 0960-9822

IS - 1

ER -