Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

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Dangosydd eitem ddigidol (DOI)

  • Sarah Helyar
  • J. Hemmer-Hansen
    Technical University of Denmark, Lyngby
  • Dorte Bekkevold
    Technical University of Denmark, Lyngby
  • Martin I. Taylor
  • Rob Ogden
    Royal Zoological Society of Scotland, Edinburgh
  • Morten T Limborg
    Technical University of Denmark, Lyngby
  • Alessia Cariani
    University of Bologna
  • Gregory E. Maes
    University of Leuven
  • Eveine Diopere
    University of Leuven
  • Gary Carvalho
  • Anders Nielsen
    Technical University of Denmark, Lyngby
Recent improvements in the speed, cost and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs). SNPs are increasingly being used as an addition to the molecular ecology toolkit in nonmodel organisms, but their efficient use remains challenging. Here, we discuss common issues when employing SNP markers, including the high numbers of markers typically employed, the effects of ascertainment bias and the inclusion of nonneutral loci in a marker panel. We provide a critique of considerations specifically associated with the application and population genetic analysis of SNPs in nonmodel taxa, focusing specifically on some of the most commonly applied methods

Allweddeiriau

Iaith wreiddiolSaesneg
Tudalennau (o-i)123-136
CyfnodolynMolecular Ecology Resources
Cyfrol11
Rhif y cyfnodolynS1
Dynodwyr Gwrthrych Digidol (DOIs)
StatwsCyhoeddwyd - Maw 2011
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