1. Published

   Selective Metal Removal from Scandinavian Mine Waters Using Novel Biomineralization Technologies

   Kay, C. M., Hedrich, S. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 479-482

   Research output: Contribution to journal › Article › peer-review

2. Published

   Microorganisms in subterranean acidic waters within Europe's deepest metal mine

   Kay, C. M., Haanela, A. & Johnson, D. B., 22 Jul 2014, In: Research in Microbiology. 165, 9, p. 705-712

   Research output: Contribution to journal › Article › peer-review

3. Published

   Mineralogy affects prokaryotic community composition in an acidic metal mine

   Kelly, L., Rivett, D. W., Pakostova, E., Creer, S., Cotterell, T. & Johnson, B., 1 Jan 2023, In: Microbiological Research. 266, 127257.

   Research output: Contribution to journal › Article › peer-review

4. Published

   Sulfidogenesis in low pH (3.8-4.2) media by a mixed population of acidophilic bacteria

   Kimura, S., Hallberg, K. B. & Johnson, B., 1 Mar 2006, In: Biodegradation. 17, 2, p. 159-167

   Research output: Contribution to journal › Article › peer-review

5. Published

   Composition of biofilm communities in acidic mine waters as revealed by combined cultivation and biomolecular approaches.

   Kimura, S., Coupland, K., Hallberg, K. B., Johnson, D. B., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 1057-1065.

   Research output: Contribution to conference › Paper

6. Published

   Biodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, elucidated using a combined cultivation-based and cultivation-independent approaches.

   Kimura, S., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 687-696.

   Research output: Contribution to conference › Paper

7. Published

   Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy.

   Kimura, S., Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Aug 2011, In: Environmental Microbiology. 13, 8, p. 2092-2104

   Research output: Contribution to journal › Article › peer-review

8. Published

   Remediation of acidic waste waters using immobilised, acidophilic sulfate-reducing bacteria.

   Kolmert, A. & Johnson, D. B., 1 Aug 2001, In: Journal of Chemical Technology and Biotechnology. 76, 8, p. 836-843

   Research output: Contribution to journal › Article › peer-review

9. Published

   Elucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing

   Kremer, R., Hedrich, S., Taubert, M., Baumann, S., Schlömann, M., Johnson, D. B. & Seifert, J., 1 May 2012, In: Journal of Integreated OMICS. 2, 1, p. 37-45

   Research output: Contribution to journal › Article › peer-review

10. Published

    A Model of Aerobic and Anaerobic Metabolism of Hydrogen in the Extremophile Acidithiobacillus ferrooxidans

    Kucera, J., Lochman, J., Bouchal, P., Pakostova, E., Mikulasek, K., Hedrich, S., Janiczek, O., Mandl, M. & Johnson, D. B., 30 Nov 2020, In: Frontiers in Microbiology. 11, 610836.

    Research output: Contribution to journal › Article › peer-review

11. Published

    Characterisation of an attenuation system for the remediation of Mn(II) contaminated waters.

    Mariner, R., Johnson, D. B. & Hallberg, K. B., 1 Nov 2008, In: Hydrometallurgy. 94, 1-4, p. 100-104

    Research output: Contribution to journal › Article › peer-review

12. Published

    Development of a novel biological system for removing manganese from contaminated waters

    Mariner, R., Johnson, D. B. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 267-270

    Research output: Contribution to journal › Article › peer-review

13. Published

    Biobasierte In-situ-Gewinnung von Industriemetallen aus unzugänglichen Lägerstatten zur EU-Rohstoffsicherung

    Matthies, R., Hejny, H., Hirsch, K., Kahnt, R., Marten, H. & Johnson, D., 12 Sept 2016, In: Georesources Zeitschrift. p. 34-38

    Research output: Contribution to journal › Article › peer-review

14. Published

    In-situ Bioextraction of Industry Metals from deep Ore Deposits to secure EU Resource Supply

    Matthies, R., Hejny, H., Hirsch, K., Kahnt, R., Marten, H. & Johnson, D. B., 2017, In: Georesources Zeitschrift. 2, p. 37-40

    Research output: Contribution to journal › Article › peer-review

15. Published

    Upconversion of Cellulosic Waste Into a Potential “Drop in Fuel” via Novel Catalyst Generated Using Desulfovibrio desulfuricans and a Consortium of Acidophilic Sulfidogens

    Mikheenko, I. P., Gomez-Bolivar, J., Merroun, M. L., Macaskie, L. E., Sharma, S., Walker, M., Hand, R. A., Grail, B., Johnson, D. B. & Orozco, R. L., 10 May 2019, In: Frontiers in Microbiology. 10, 970.

    Research output: Contribution to journal › Article › peer-review

16. Published

    Draft Genome Sequence of the Nominated Type Strain of “Ferrovum myxofaciens,” an Acidophilic, Iron-Oxidizing Betaproteobacterium

    Moya-Beltran, A., Cardenas, J. P., Covarrubias, P. C., Issotta, F., Ossandon, F. J., Grail, B. M., Holmes, D. S., Quatrini, R. & Johnson, D. B., 21 Aug 2014, In: Genome Announcements. 2, 4

    Research output: Contribution to journal › Article › peer-review

17. Published

    Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions

    Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238

    Research output: Contribution to journal › Article › peer-review

18. Published

    Influence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains

    Moya-Beltrán, A., Gajdosik, M., Rojas-Villalobos, C., Beard, S., Mandl, M., Silva-García, D., Johnson, D. B., Ramirez, P., Quatrini, R. & Kucera, J., 5 Jul 2023, In: Scientific Reports. 13, 1, 10876.

    Research output: Contribution to journal › Article › peer-review

19. Published

    Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia

    Moya-Beltrán, A., Makarova, K. S., Acuna, L. G., Wolf, Y., Covarrubias, P. C., Shmakov, S. A., Silva, C., Tolstoy, I., Johnson, B., Koonin, E. V. & Quatrini, R., 15 Oct 2021, In: The CRISPR Journal. 4, 5, p. 656-672

    Research output: Contribution to journal › Article › peer-review

20. Published

    Biosynthesis of zinc sulfide quantum dots using waste off-gas from a metal bioremediation process

    Murray, A. J., Roussel, J., Rolley, J., Woodhall, F., Mikheenko, I. P., Johnson, D. B., Gomez-Bolivar, J., Merroun, M. L. & Macaskie, L. E., 2017, In: RSC Advances. 7, 35, p. 21484-21491

    Research output: Contribution to journal › Article › peer-review

21. Published

    Production of Glycolic Acid by Chemolithotrophic Iron- and Sulfur-Oxidizing Bacteria and Its Role in Delineating and Sustaining Acidophilic Sulfide Mineral-Oxidizing Consortia.

    Nancucheo, I. & Johnson, D. B., 1 Jan 2010, In: Applied and Environmental Microbiology. 76, 2, p. 461-467

    Research output: Contribution to journal › Article › peer-review

22. Published

    Removal of sulfate from extremely acidic mine waters using low pH sulfidogenic bioreactors

    Nancucheo, I. & Johnson, D. B., 1 Dec 2014, In: Hydrometallurgy. 150, p. 222-226

    Research output: Contribution to journal › Article › peer-review

23. Published

    Extraction of copper from an oxidized (lateritic) ore using bacterially-catalysed reductive dissolution

    Nancucheo, I. P., Ňancucheo, I., Grail, B. M., Hilario, F., du Plessis, C. A. & Johnson, D. B., 1 Apr 2015, In: Applied Microbiology and Biotechnology. 98, 14, p. 6297-6305

    Research output: Contribution to journal › Article › peer-review

24. Published

    Draft Genome Sequence of a Novel Acidophilic Iron-Oxidizing Firmicutes Species, “Acidibacillus ferrooxidans” (SLC66T)

    Nancucheo, I., Oliveira, R., Dall’Agnol, H., Johnson, D. B., Holanda, R., Lopes Nunes, G., Cuadros-Orellana, S. & Oliveira, G., May 2016, In: Genome Announcements. 4, 3, e00383-16.

    Research output: Contribution to journal › Article › peer-review

25. Published

    Reductive Dissolution of a Lateritic Ore Containing Rare Earth Elements (REE) Using Acidithiobacillus Species

    Nancucheo, I., Johnson, D. B., Lopes, M. & Oliveira, G., Aug 2017, In: Solid State Phenomena. 262, p. 299-302

    Research output: Contribution to journal › Article › peer-review

26. Published

    Bioreductive Dissolution as a Pretreatment for Recalcitrant Rare-Earth Phosphate Minerals Associated with Lateritic Ores

    Nancucheo, I., Oliveira, G., Lopes, M. & Johnson, D. B., 26 Feb 2019, In: Minerals. 9, 3, 136.

    Research output: Contribution to journal › Article › peer-review

27. Published

    Characteristics of an Iron-Reducing, Moderately Acidophilic Actinobacterium Isolated from Pyritic Mine Waste, and Its Potential Role in Mitigating Mineral Dissolution in Mineral Tailings Deposits

    Nancucheo, I. & Johnson, D. B., 2 Jul 2020, In: Microorganisms . 8, 7, 90.

    Research output: Contribution to journal › Article › peer-review

28. Published

    Solid and liquid media for isolating and cultivating acidophilic and acid-tolerant sulfate-reducing bacteria

    Nancucheo, I., Rowe, O. F., Hedrich, S. & Johnson, D., 1 May 2016, In: FEMS Microbiology Letters. 363, p. fnw083

    Research output: Contribution to journal › Article › peer-review

29. Published

    Acidithiobacillus ferrianus sp. nov. an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph

    Norris, P. R., Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., Mar 2020, In: Extremophiles. 24, 2, p. 329-337 9 p.

    Research output: Contribution to journal › Article › peer-review

30. Published

    Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation

    Nuñez, H., Loyola, D., Cárdenas, J. P., Holmes, D. S., Johnson, D. & Quantrini, R., Nov 2014, In: Research in Microbiology. 165, 9, p. 735-742

    Research output: Contribution to journal › Article › peer-review

31. Published

    Molecular systematics of the genus Acidithiobacillus: insights into the phylogenetic structure and diversification of the taxon

    Nuñez, H., Moya-Beltrán, A., Covarrubias, P. C., Issotta, F., Cárdenas, J. P., González, M., Atavales, J., Acuña, L. G., Johnson, D. B. & Quatrini, R., 19 Jan 2017, In: Frontiers in Microbiology. 8, 30.

    Research output: Contribution to journal › Article › peer-review

32. Published

    Detection, identification and typing of Acidithiobacillus species and strains: a review

    Nuñez, H., Covarrubias, P. C., Moya-Beltrán, A., Issotta, F., Atavales, J., Acuña, L. G., Johnson, D. B. & Quatrini, R., Sept 2016, In: Research in Microbiology. 167, 7, p. 555-567

    Research output: Contribution to journal › Article › peer-review

33. Published

    Bioleaching of pyrite by defined mixed cultures of moderately thermophilic acidophiles.

    Okibe, N., Johnson, D. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 443-451

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

34. Published

    Bioleaching of pyrite by defined mixed populations of moderately thermophilic acidophiles in pH-controlled bioreactors.

    Okibe, N., Johnson, D. B., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 165-173.

    Research output: Contribution to conference › Paper

35. Published

    Toxicity of flotation reagents to moderately thermophilic bioleaching microorganisms

    Okibe, N. & Johnson, D. B., 1 Dec 2002, In: Biotechnology Letters. 24, 23, p. 2011-2016

    Research output: Contribution to journal › Article › peer-review

36. Published

    Biooxidation of pyrite by defined mixed cultures of moderately thermophilic acidophiles in pH-controlled bioreactors: Significance of microbial interactions.

    Okibe, N. & Johnson, D. B., 5 Sept 2004, In: Biotechnology and Bioengineering. 87, 5, p. 574-583

    Research output: Contribution to journal › Article › peer-review

37. Published

    Oxidative dissolution of sulfide minerals by defined mixed populations of moderately thermophilic mmicroorganisms

    Okibe, N. & Johnson, D. B., 1 Jan 2001, p. 39.

    Research output: Contribution to conference › Paper

38. Published

    Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation

    Okibe, N., Gericke, M., Hallberg, K. B. & Johnson, B., 1 Apr 2003, In: Applied and Environmental Microbiology. 69, 4, p. 1936-1943

    Research output: Contribution to journal › Article › peer-review

39. Published

    Anaerobic Sulfur Metabolism Coupled to Dissimilatory Iron Reduction in the Extremophile Acidithiobacillus ferrooxidans

    Osorio, H., Mangold, S., Denis, Y., Ñancucheo, I., Esparza, M., Johnson, D. B., Bonnefoy, V., Dopson, M. & Holmes, D. S., 1 Apr 2013, In: Applied and Environmental Microbiology. 79, 7, p. 2172-2181

    Research output: Contribution to journal › Article › peer-review

40. Published

    In situ bioleaching: an alternative approach of metal extraction from deep-buried sulfide ores

    Pakostova, E., Grail, B. & Johnson, D. B., Jun 2016, Biohydromet 2016 Proceedings.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

41. Published

    Column Bioleaching of a Saline, Calcareous Copper Sulfide Ore

    Pakostova, E., Grail, B. & Johnson, D. B., Aug 2017, In: Solid State Phenomena. 262, p. 7-11

    Research output: Contribution to journal › Article › peer-review

42. Published

    Indirect bioleaching of sulfidic ores and its importance for the development of in situ processing of deep-buried base metal deposits

    Pakostova, E., Grail, B. & Johnson, D. B., Oct 2015.

    Research output: Contribution to conference › Paper › peer-review

43. Published

    BIOMOre – An alternative mining concept

    Pakostova, E. & Johnson, D. B., Jun 2016.

    Research output: Contribution to conference › Poster › peer-review

44. Published

    Bio-processing of a saline, calcareous copper sulfide ore by sequential leaching

    Pakostova, E., Grail, B. M. & Johnson, D. B., Aug 2018, In: Hydrometallurgy. 179, p. 36-43

    Research output: Contribution to journal › Article › peer-review

45. Published

    Indirect oxidative bioleaching of a polymetallic black schist sulfide ore

    Pakostova, E., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 102-107

    Research output: Contribution to journal › Article › peer-review

46. Published

    Microbial generation of sulfuric acid from granular elemental sulfur in laboratory-scale bioreactors

    Pakostova, E. & Johnson, D. B., Dec 2019, In: Hydrometallurgy. 190, 105152.

    Research output: Contribution to journal › Article › peer-review

47. Published

    Bacterial and Archaeal Diversity in Sulfide-Bearing Waste Rock at Faro Mine Complex, Yukon Territory, Canada

    Pakostova, E., Johnson, D. B., Bao, Z., MacKenzie, P. M., Ptacek, C. J. & Blowes, D. W., 1 Jun 2020, In: Geomicrobiology Journal. 37, 6, p. 511-519

    Research output: Contribution to journal › Article › peer-review

48. Published

    Genome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journal › Article › peer-review

49. Published

    Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journal › Article › peer-review

50. Published

    Microbiomes in extremely acidic environments: functionalities and interactions that allow survival and growth of prokaryotes at low pH

    Quatrini, R. & Johnson, D. B., Jun 2018, In: Current Opinion in Microbiology. 43, p. 139-147 9 p.

    Research output: Contribution to journal › Review article › peer-review