1. 2017
2. Published

   Indirect oxidative bioleaching of a polymetallic black schist sulfide ore

   Pakostova, E., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 102-107

   Research output: Contribution to journal › Article › peer-review

3. Published

   New approaches for extracting and recovering metals from mine tailings

   Falagan Rodriguez, M. D. C., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 71-78

   Research output: Contribution to journal › Article › peer-review

4. Published

   Reductive bioprocessing of cobalt-bearing limonitic laterites

   Smith, S., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 86-90

   Research output: Contribution to journal › Article › peer-review

5. Published

   Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes

   Tran, T. T. T., Mangenot, S., Magdelenat, G., Payen, E., Rouy, Z., Belahbib, H., Grail, B., Johnson, D. B., Bonnefoy, V. & Talla, E., 13 Jun 2017, In: Frontiers in Microbiology. 8, 1009.

   Research output: Contribution to journal › Article › peer-review

6. Published

   Approaches for Eliminating Bacteria Introduced during In Situ Bioleaching of Fractured Sulfidic Ores in Deep Subsurface

   Ballerstedt, H., Pakostova, E., Johnson, D. B. & Schippers, A., Aug 2017, In: Solid State Phenomena. 262, p. 70-74

   Research output: Contribution to journal › Article › peer-review

7. Published

   Column Bioleaching of a Saline, Calcareous Copper Sulfide Ore

   Pakostova, E., Grail, B. & Johnson, D. B., Aug 2017, In: Solid State Phenomena. 262, p. 7-11

   Research output: Contribution to journal › Article › peer-review

8. Published

   Reductive Dissolution of a Lateritic Ore Containing Rare Earth Elements (REE) Using Acidithiobacillus Species

   Nancucheo, I., Johnson, D. B., Lopes, M. & Oliveira, G., Aug 2017, In: Solid State Phenomena. 262, p. 299-302

   Research output: Contribution to journal › Article › peer-review

9. Published

   Selective Chemical and Biological Metal Recovery from Cu-Rich Bioleaching Solutions

   Hedrich, S., Kermer, R., Aubel, T., Martin, M., Schippers, A., Johnson, D. B. & Janneck, E., Aug 2017, In: Solid State Phenomena. 262, p. 107-112

   Research output: Contribution to journal › Article › peer-review

10. Published

    The BIOMOre Project – A New Mining Concept for Extracting Metals from Deep Ore Deposits Using Biotechnology

    Fillipov, L., Izart, C., Hejny, H., Hirsch, K., Johnson, B., Kahnt, R., Marten, H. & Slabbert, W., Oct 2017, In: Mining Report. 153, 5, p. 436-445

    Research output: Contribution to journal › Article › peer-review

11. Published

    Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366)

    Castro, M., Moya-Beltrán, A., Covarrubias, P. C., Gonzalez, M., Issotta, F., Nuñez, H., Acuña, L. G., Encina, G., Holmes, D. S., Johnson, D. B. & Quatrini, R., 15 Dec 2017, In: Standards in genomic sciences. 12, p. 77

    Research output: Contribution to journal › Article › peer-review

12. 2018
13. Published

    Growth of Leptospirillum ferriphilum in sulfur medium in co-culture with Acidithiobacillus caldus

    Smith, S. & Johnson, D., Mar 2018, In: Extremophiles. 22, 2, p. 327-333

    Research output: Contribution to journal › Article › peer-review

14. Published

    Salt Stress-Induced Loss of Iron Oxidoreduction Activities and Reacquisition of That Phenotype Depend on rus Operon Transcription in Acidithiobacillus ferridurans

    Bonnefoy, V., Grail, B. M. & Johnson, D. B., Apr 2018, In: Applied and Environmental Microbiology. 84, 7

    Research output: Contribution to journal › Article › peer-review

15. Published

    Microbiomes in extremely acidic environments: functionalities and interactions that allow survival and growth of prokaryotes at low pH

    Quatrini, R. & Johnson, D. B., Jun 2018, In: Current Opinion in Microbiology. 43, p. 139-147 9 p.

    Research output: Contribution to journal › Review article › peer-review

16. Published

    Bio-processing of a saline, calcareous copper sulfide ore by sequential leaching

    Pakostova, E., Grail, B. M. & Johnson, D. B., Aug 2018, In: Hydrometallurgy. 179, p. 36-43

    Research output: Contribution to journal › Article › peer-review

17. Published

    Implementation of biological and chemical techniques to recover metals from copper-rich leach solutions

    Hedrich, S., Kermer, R., Aubel, T., Martin, M., Schippers, A., Johnson, D. B. & Janneck, E., Aug 2018, In: Hydrometallurgy. 179, p. 274-281

    Research output: Contribution to journal › Article › peer-review

18. Published

    The Evolution, Current Status, and Future Prospects of Using Biotechnologies in the Mineral Extraction and Metal Recovery Sectors

    Johnson, D. B., 8 Aug 2018, In: Minerals. 8, 8, 343.

    Research output: Contribution to journal › Article › peer-review

19. Published

    Design and Application of a Low pH Upflow Biofilm Sulfidogenic Bioreactor for Recovering Transition Metals From Synthetic Waste Water at a Brazilian Copper Mine

    Santos, A. L. & Johnson, D. B., 30 Aug 2018, In: Frontiers in Microbiology. 9, 2051.

    Research output: Contribution to journal › Article › peer-review

20. Published

    Identification of trehalose as a compatible solute in different species of acidophilic bacteria

    Galleguillos, P. A., Grail, B. M., Hallberg, K. B., Demergasso, C. S. & Johnson, D. B., Oct 2018, In: Journal of Microbiology. 56, 10, p. 727-733 7 p.

    Research output: Contribution to journal › Article › peer-review

21. Published

    The significance of pH in dictating the relative toxicities of chloride and copper to acidophilic bacteria

    Falagan, C. & Johnson, D. B., Dec 2018, In: Research in Microbiology. 169, 10, p. 552-557

    Research output: Contribution to journal › Article › peer-review

22. 2019
23. Published

    Extremophiles and Acidic Environments

    Johnson, D. B. & Aguilera, A., 2019, Encyclopedia of Microbiology . 4tk ed. p. 206-227

    Research output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary › peer-review

24. Published

    Bioreductive Dissolution as a Pretreatment for Recalcitrant Rare-Earth Phosphate Minerals Associated with Lateritic Ores

    Nancucheo, I., Oliveira, G., Lopes, M. & Johnson, D. B., 26 Feb 2019, In: Minerals. 9, 3, 136.

    Research output: Contribution to journal › Article › peer-review

25. Published

    Acidithiobacillus ferrooxidans

    Quatrini, R. & Johnson, D. B., 1 Mar 2019, In: Trends in Microbiology. 27, 3, p. 282-283 2 p.

    Research output: Contribution to journal › Article › peer-review

26. Published

    Upconversion of Cellulosic Waste Into a Potential “Drop in Fuel” via Novel Catalyst Generated Using Desulfovibrio desulfuricans and a Consortium of Acidophilic Sulfidogens

    Mikheenko, I. P., Gomez-Bolivar, J., Merroun, M. L., Macaskie, L. E., Sharma, S., Walker, M., Hand, R. A., Grail, B., Johnson, D. B. & Orozco, R. L., 10 May 2019, In: Frontiers in Microbiology. 10, 970.

    Research output: Contribution to journal › Article › peer-review

27. Published

    The development and future impact on biotechnologies for mineral processing and metal recovery

    Johnson, B., Aug 2019, Proceedings of the 15th Biennial Meeting of the Society of Geology Applied to Mineral Deposits. p. 1516-1619

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

28. Published

    Acidithiobacillus sulfuriphilus sp. nov. an extremely acidophilic sulfur-oxidizing chemolithotroph isolated from a neutral pH environment

    Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., 1 Sept 2019, In: International Journal of Systematic Evolutionary Microbiology. 69, 9, p. 2907-2913 7 p.

    Research output: Contribution to journal › Article › peer-review

29. Published

    Dissimilatory reduction of sulfate and zero-valent sulfur at low pH and its significance for bioremediation and metal recovery

    Johnson, D. B. & Sánchez-Andrea, I., 10 Oct 2019, In: Advances in Microbial Physiology. 75, p. 205-231 27 p.

    Research output: Contribution to journal › Review article › peer-review

30. Published

    Enrichment and isolation of acid-tolerant sulfate-reducing microorganisms in the anoxic, acidic hot spring sediments from Copahue volcano, Argentina

    Willis, G., Nancucheo, I., Hedrich, S., Giaveno, A., Donati, E. & Johnson, D. B., Dec 2019, In: Fems Microbiology Ecology. p. fiz175

    Research output: Contribution to journal › Article › peer-review

31. Published

    Microbial generation of sulfuric acid from granular elemental sulfur in laboratory-scale bioreactors

    Pakostova, E. & Johnson, D. B., Dec 2019, In: Hydrometallurgy. 190, 105152.

    Research output: Contribution to journal › Article › peer-review

32. 2020
33. Published

    Acidophile Microbiology in Space and Time

    Johnson, D. B. & Quatrini, R., 21 Feb 2020, In: Current issues in molecular biology. 39, p. 63-76 14 p.

    Research output: Contribution to journal › Article › peer-review

34. Published

    Acidithiobacillus ferrianus sp. nov. an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph

    Norris, P. R., Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., Mar 2020, In: Extremophiles. 24, 2, p. 329-337 9 p.

    Research output: Contribution to journal › Article › peer-review

35. Published

    Removal of Zinc From Circum-Neutral pH Mine-Impacted Waters Using a Novel “Hybrid” Low pH Sulfidogenic Bioreactor

    Holanda, R. & Johnson, D. B., 10 Mar 2020, In: Frontiers in Environmental Science. 8, 22.

    Research output: Contribution to journal › Article › peer-review

36. Published

    Bacterial and Archaeal Diversity in Sulfide-Bearing Waste Rock at Faro Mine Complex, Yukon Territory, Canada

    Pakostova, E., Johnson, D. B., Bao, Z., MacKenzie, P. M., Ptacek, C. J. & Blowes, D. W., 1 Jun 2020, In: Geomicrobiology Journal. 37, 6, p. 511-519

    Research output: Contribution to journal › Article › peer-review

37. Published

    Characteristics of an Iron-Reducing, Moderately Acidophilic Actinobacterium Isolated from Pyritic Mine Waste, and Its Potential Role in Mitigating Mineral Dissolution in Mineral Tailings Deposits

    Nancucheo, I. & Johnson, D. B., 2 Jul 2020, In: Microorganisms . 8, 7, 90.

    Research output: Contribution to journal › Article › peer-review

38. Published

    Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite

    Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.

    Research output: Contribution to journal › Article › peer-review

39. Published

    Sulfur-enhanced reductive bioprocessing of cobalt-bearing materials for base metals recovery

    Araujo Santos, A. L., Dybowska, A., Schofield, P., Herrington, R. & Johnson, B., 1 Aug 2020, In: Hydrometallurgy. 195, 105396.

    Research output: Contribution to journal › Article › peer-review

40. Published

    Isolation and characterization of a novel acidophilic zero-valent sulfur- and ferric iron-respiring Firmicute

    Holanda, R. & Johnson, D. B., 18 Aug 2020, In: Research in Microbiology. 171, 7, p. 215-221

    Research output: Contribution to journal › Article › peer-review

41. Published

    Biological removal of sulfurous compounds and metals from inorganic wastewaters

    Johnson, B. & Santos, A. L., Oct 2020, Environmental Technologies to Treat Sulfur Pollution: Principles and Engineering. Lens, P. N. L. (ed.). 2nd ed. IWA Publishing, p. 215-246

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

42. Published

    A Model of Aerobic and Anaerobic Metabolism of Hydrogen in the Extremophile Acidithiobacillus ferrooxidans

    Kucera, J., Lochman, J., Bouchal, P., Pakostova, E., Mikulasek, K., Hedrich, S., Janiczek, O., Mandl, M. & Johnson, D. B., 30 Nov 2020, In: Frontiers in Microbiology. 11, 610836.

    Research output: Contribution to journal › Article › peer-review

43. 2021
44. Published

    Design and Operation of Empirical Manganese-Removing Bioreactors and Integration into a Composite Modular System for Remediating and Recovering Metals from Acidic Mine Waters

    Santos, A. L. & Johnson, B., 10 May 2021, In: Applied Sciences. 11, 9, 4287.

    Research output: Contribution to journal › Article › peer-review

45. Published

    Bioleaching of Transition Metals From Limonitic Laterite Deposits and Reassessment of the Multiple Roles of Sulfur-Oxidizing Acidophiles in the Process

    Johnson, D. B., Smith, S. & Santos, A. L., 26 Jul 2021, In: Frontiers in Microbiology. 12, 703177.

    Research output: Contribution to journal › Article › peer-review

46. Published

    Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia

    Moya-Beltrán, A., Makarova, K. S., Acuna, L. G., Wolf, Y., Covarrubias, P. C., Shmakov, S. A., Silva, C., Tolstoy, I., Johnson, B., Koonin, E. V. & Quatrini, R., 15 Oct 2021, In: The CRISPR Journal. 4, 5, p. 656-672

    Research output: Contribution to journal › Article › peer-review

47. Published

    Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions

    Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238

    Research output: Contribution to journal › Article › peer-review

48. 2022
49. Published

    Continuous removal of sulfate and metals from acidic mining-impacted waters at low temperature using a sulfate-reducing bacterial consortium

    Virpiranta, H., Sotaniemi, V.-H., Leiviskä, T., Taskila, S., Rämö, J., Johnson, D. B. & Tanskanen, J., 1 Jan 2022, In: Chemical Engineering Journal. 427, 132050.

    Research output: Contribution to journal › Article › peer-review

50. 2023
51. Published

    Mineralogy affects prokaryotic community composition in an acidic metal mine

    Kelly, L., Rivett, D. W., Pakostova, E., Creer, S., Cotterell, T. & Johnson, B., 1 Jan 2023, In: Microbiological Research. 266, 127257.

    Research output: Contribution to journal › Article › peer-review

52. Published

    Influence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains

    Moya-Beltrán, A., Gajdosik, M., Rojas-Villalobos, C., Beard, S., Mandl, M., Silva-García, D., Johnson, D. B., Ramirez, P., Quatrini, R. & Kucera, J., 5 Jul 2023, In: Scientific Reports. 13, 1, 10876.

    Research output: Contribution to journal › Article › peer-review