Research Portal

Dr Johanna Paijmans

Lecturer in Zoology

Affiliations

ORCID: 0000-0002-1938-7052
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  1. Article › Research › Not peer-reviewed
  2. Published

    De Sabeltandkat Homotherium Latidens - Een Onderdeel Van De Laat Pleistocene Mammoetfauna Van Het Noordelijk Halfrond

    Reumer, J. W. F., Folkertsma, R. & Paijmans, J., 2019, In: Cranium. 36, 2, p. 5 1 p.

    Research output: Contribution to journal › Article

  3. Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing data

    Barlow, A., Fortes, G. M. G., Dalen, L., Pinhasi, R., Gasparyan, B., Rabeder, G., Frischauf, C., Paijmans, J. L. A. & Hofreiter, M., 1 Sept 2016, In: bioRxiv. p. 075911 1 p.

    Research output: Contribution to journal › Article

  4. Article › Research › Peer-reviewed
  5. Published

    A method for PCR-free library preparation for sequencing palaeogenomes

    Henneberger, K., Barlow, A., Alberti, F., Preick, M., Constantin, S., Döppes, D., Rosendahl, W., Hofreiter, M. & Paijmans, J. L. A., 19 Mar 2025, In: PLoS ONE. 20, 3, p. e0319573

    Research output: Contribution to journal › Article › peer-review

  6. A mitogenomic timetree for Darwin’s enigmatic “transitional” South American mammal, Macrauchenia patachonica.

    Westbury, M. V., Baleka, S., Barlow, A., Hartmann, S., Paijmans, J., Forasiepi, A. M., Kramarz, A., Bond, M., Gelfo, J. N., Gelfo, J. N., Reguero, M. A., Lopez-Mendoza, P., Taglioretti, M., Scaglia, F., Rinderknecht, A., Jones, W., Mena, F., Billet, G., de Muizon, C., Aguilar, J. L., Mac Phee, R. D. E. & Hofreiter, M., 27 Jul 2017, In: Nature Communications. 15951.

    Research output: Contribution to journal › Article › peer-review

  7. Published

    African and Asian leopards are highly differentiated at the genomic level

    Paijmans, J., Barlow, A., Becker, M. S., Cahill, J. A., Fickel, J., Forster, D. W. G., Gries, K., Hartmann, S., Havmoller, R. W., Henneberger, K., Kern, C., Kitchener, A. C., Lorenzen, E. D., Mayer, F., O'Brien, S. J., von Seth, J., Sinding, M.-H. S., Spong, G., Uphyrkina, O., Wachter, B., Westbury, M. V., Dalén, L., Bhak, J., Manica, A. & Hofreiter, M., 10 May 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Ancestral mitogenome capture of the Southeast Asian banded linsang.

    Paijmans, J., Barlow, A., Henneberger, K., Fickel, J., Hofreiter, M. & Foerster, D. W. G., 30 Jun 2020, In: PLoS ONE.

    Research output: Contribution to journal › Article › peer-review

  9. Published

    Ancient DNA from the Asiatic Wild Dog (Cuon alpinus) from Europe

    Taron, U. H., Paijmans, J., Barlow, A., Preick, M., Lyengar, A., Dragusin, V., Vasile, S., Marciszak, A., Roblickova, M. & Hofreiter, M., 22 Jan 2021, In: Genes.

    Research output: Contribution to journal › Article › peer-review

  10. Ancient DNA reveals twenty million years of aquatic life in beavers.

    Xenikoudakis, G., Ahmed, M., Harris, J. C., Wadleigh, R., Paijmans, J., Hartmann, S., Barlow, A., Learner, H. & Hofreiter, M., 3 Feb 2020, In: Current Biology. p. 95-111

    Research output: Contribution to journal › Article › peer-review

  11. Clovis Age Western Stemmed Projectile Points and Human Coprolites at the Paisley Caves

    Jenkins, D. L., Davis, L. G., Stafford, T. W., Campos, P. F., Hockett, B., Jones, G. T., Cummings, L. S., Yost, C., Connolly, T. J., Yohe, R. M., Gibbons, S. C., Raghavan, M., Rasmussen, M., Paijmans, J. L. A., Hofreiter, M., Kemp, B. M., Barta, J. L., Monroe, C., Gilbert, M. T. P. & Willerslev, E., 13 Jul 2012, In: Science. 337, 6091, p. 223-228 6 p.

    Research output: Contribution to journal › Article › peer-review

  12. Complex admixture preceded and followed the extinction of wisent in the wild.

    Wecek, K., Hartmann, S., Paijmans, J., Taron, U. H., Xenikoudakis, G., Cahill, J. A., Heintzman, P. D., Shapiro, B., Baryshnikov, G., Bunevich, A. N., Crees, J. J., Dobosz, R., Manaserian, N., Okarma, H., Tokarska, M., Turvey, S., Wojcik, J. M., Zyla, W., Szymura, J. M., Hofreiter, M. & Barlow, A., 1 Mar 2017, In: Molecular Biology and Evolution. 34, 7, p. 598-612

    Research output: Contribution to journal › Article › peer-review

  13. Consensify: A Method for Generating Pseudohaploid Genome Sequences from Palaeogenomic Datasets with Reduced Error Rates.

    Barlow, A., Hartmann, S., Gonzalez, J., Hofreiter, M. & Paijmans, J., 2 Jan 2020, In: Genes. 11, 1

    Research output: Contribution to journal › Article › peer-review

  14. Published

    Diversity and Paleodemography of the Addax (Addax nasomaculatus), a Saharan Antelope on the Verge of Extinction

    Hempel, E., Westbury, M. V., Grau, J. H., Trinks, A., Paijmans, J., Kliver, S., Barlow, A., Mayer, F., Muller, J., Chen, L., Koepfli, K.-P., Hofreiter, M. & Bibi, F., 11 Aug 2021, In: Genes. 12, 8

    Research output: Contribution to journal › Article › peer-review

  15. Emergence of a Chimeric Globin Pseudogene and Increased Hemoglobin Oxygen Affinity Underlie the Evolution of Aquatic Specializations in Sirenia

    Signore, A. V., Paijmans, J. L. A., Hofreiter, M., Fago, A., Weber, R. E., Springer, M. S. & Campbell, K. L., 1 Jun 2019, In: Molecular Biology and Evolution. 36, 6, p. 1134-1147

    Research output: Contribution to journal › Article › peer-review

  16. Published

    Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K., Hofreiter, M. & Paijmans, J., 23 Aug 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  17. Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse

    Bellone, R. R., Holl, H., Setaluri, V., Devi, S., Maddodi, N., Archer, S., Sandmeyer, L., Ludwig, A., Foerster, D., Pruvost, M., Reissmann, M., Bortfeldt, R., Adelson, D. L., Lim, S. L., Nelson, J., Haase, B., Engensteiner, M., Leeb, T., Forsyth, G., Mienaltowski, M. J., Mahadevan, P., Hofreiter, M., Paijmans, J. L. A., Gonzalez-Fortes, G., Grahn, B. & Brooks, S. A., 22 Oct 2013, In: PLoS ONE. 8, 10, p. e78280

    Research output: Contribution to journal › Article › peer-review

  18. Evolutionary history and extinction dynamics of extinct sabre- and scimitar-toothed cats based on ancient mitogenomes.

    Paijmans, J., Barnett, R., Gilbert, M. T. P., Zepeda-Mendoza, M. L., Reumer, J. W. F., de Vos, J., Zazula, G., Nagel, D., Baryshnikov, G., Leonard, J. A., Rohland, N., Westbury, M. V., Barlow, A. & Hofreiter, M., 6 Nov 2017, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  19. Historical biogeography of the leopard (Panthera pardus) and its extinct European populations.

    Paijmans, J., Barlow, A., Forster, D. W., Henneberger, K., Meyer, M., Nickel, B., Nagel, D., Havmoller, R. W., Baryshnikov, G., Joger, U., Rosendahl, W. & Hofreiter, M., 23 Oct 2018, In: BMC Evolutionary Biology. 18, 156.

    Research output: Contribution to journal › Article › peer-review

  20. Identifying the true number of specimens of the extinct blue antelope ( Hippotragus leucophaeus )

    Hempel, E., Bibi, F., Faith, J. T., Brink, J. S., Kalthoff, D. C., Kamminga, P., Paijmans, J. L. A., Westbury, M. V., Hofreiter, M. & Zachos, F. E., 22 Jan 2021, (E-pub ahead of print) In: Scientific Reports. 11, 1, 2100.

    Research output: Contribution to journal › Article › peer-review

  21. Impact of enrichment conditions on cross-species capture of fresh and degraded DNA

    Paijmans, J. L. A., Fickel, J., Courtiol, A., Hofreiter, M. & Förster, D. W., 1 Jan 2016, In: Molecular Ecology Resources. 16, 1, p. 42-55 14 p.

    Research output: Contribution to journal › Article › peer-review

  22. Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades

    Gaudry, M. J., Jastroch, M., Treberg, J. R., Hofreiter, M., Paijmans, J. L. A., Starrett, J., Wales, N., Signore, A. V., Springer, M. S. & Campbell, K. L., 7 Jul 2017, In: Science Advances. 3, 7, p. e1602878

    Research output: Contribution to journal › Article › peer-review

  23. Published

    Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence

    Gurke, M., Vidal-Gorosquieta, A., Paijmans, J., Wecek, K., Barlow, A., Gonzalez-Fortes, G., Hartmann, S., Grandal-d'Anglade, A. & Hofreiter, M., 28 Apr 2021, In: PLoS ONE.

    Research output: Contribution to journal › Article › peer-review

  24. Interordinal gene capture, the phylogenetic position of Steller’s sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia

    Springer, M. S., Signore, A. V., Paijmans, J. L. A., Vélez-Juarbe, J., Domning, D. P., Bauer, C. E., He, K., Crerar, L., Campos, P. F., Murphy, W. J., Meredith, R. W., Gatesy, J., Willerslev, E., MacPhee, R. D. E., Hofreiter, M. & Campbell, K. L., 1 Oct 2015, In: Molecular Phylogenetics and Evolution. 91, p. 178-193 16 p.

    Research output: Contribution to journal › Article › peer-review

  25. Published

    Middle Pleistocene genome calibrates a revised evolutionary history of extinct cave bears

    Barlow, A., Paijmans, J., Alberti, F., Gasparyan, B., Bar-Oz, G., Pinhasi, R., Foronova, I., Puzachenko, A. Y., Pacher, M., Dalén, L., Baryshnikov, G. & Hofreiter, M., 26 Apr 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  26. Published

    Mitogenome phylogeny including data from additional subspecies provides new insights into the historical biogeography of the Eurasian lynx Lynx lynx

    Mengulluoglu, D., Ambarli, H., Barlow, A., Paijmans, J., Sayar, A. O., Emir, H., Kandemir, I., Hofer, H., Fickel, J. & Forster, D. W., 6 Aug 2021, In: Genes. 12, 8

    Research output: Contribution to journal › Article › peer-review

  27. Mitogenomic analyses from ancient DNA

    Paijmans, J. L. A., Gilbert, M. T. P. & Hofreiter, M., 1 Nov 2013, In: Molecular Phylogenetics and Evolution. 69, p. 404-416 13 p.

    Research output: Contribution to journal › Article › peer-review

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