Research Portal

Dr Johanna Paijmans

Lecturer in Zoology

Affiliations

ORCID: 0000-0002-1938-7052
1 - 45 out of 45Page size: 50
Sort by: Type
  1. Article › Research › Not peer-reviewed
  2. Published

    De Sabeltandkat Homotherium Latidens - Een Onderdeel Van De Laat Pleistocene Mammoetfauna Van Het Noordelijk Halfrond

    Reumer, J. W. F., Folkertsma, R. & Paijmans, J., 2019, In: Cranium. 36, 2, p. 5 1 p.

    Research output: Contribution to journal › Article

  3. Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing data

    Barlow, A., Fortes, G. M. G., Dalen, L., Pinhasi, R., Gasparyan, B., Rabeder, G., Frischauf, C., Paijmans, J. L. A. & Hofreiter, M., 1 Sept 2016, In: bioRxiv. p. 075911 1 p.

    Research output: Contribution to journal › Article

  4. Article › Research › Peer-reviewed

  5. A mitogenomic timetree for Darwin’s enigmatic “transitional” South American mammal, Macrauchenia patachonica.

    Westbury, M. V., Baleka, S., Barlow, A., Hartmann, S., Paijmans, J., Forasiepi, A. M., Kramarz, A., Bond, M., Gelfo, J. N., Gelfo, J. N., Reguero, M. A., Lopez-Mendoza, P., Taglioretti, M., Scaglia, F., Rinderknecht, A., Jones, W., Mena, F., Billet, G., de Muizon, C., Aguilar, J. L., Mac Phee, R. D. E. & Hofreiter, M., 27 Jul 2017, In: Nature Communications. 15951.

    Research output: Contribution to journal › Article › peer-review

  6. Published

    African and Asian leopards are highly differentiated at the genomic level

    Paijmans, J., Barlow, A., Becker, M. S., Cahill, J. A., Fickel, J., Forster, D. W. G., Gries, K., Hartmann, S., Havmoller, R. W., Henneberger, K., Kern, C., Kitchener, A. C., Lorenzen, E. D., Mayer, F., O'Brien, S. J., von Seth, J., Sinding, M.-H. S., Spong, G., Uphyrkina, O., Wachter, B., Westbury, M. V., Dalén, L., Bhak, J., Manica, A. & Hofreiter, M., 10 May 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Ancestral mitogenome capture of the Southeast Asian banded linsang.

    Paijmans, J., Barlow, A., Henneberger, K., Fickel, J., Hofreiter, M. & Foerster, D. W. G., 30 Jun 2020, In: PLoS ONE.

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Ancient DNA from the Asiatic Wild Dog (Cuon alpinus) from Europe

    Taron, U. H., Paijmans, J., Barlow, A., Preick, M., Lyengar, A., Dragusin, V., Vasile, S., Marciszak, A., Roblickova, M. & Hofreiter, M., 22 Jan 2021, In: Genes.

    Research output: Contribution to journal › Article › peer-review

  9. Ancient DNA reveals twenty million years of aquatic life in beavers.

    Xenikoudakis, G., Ahmed, M., Harris, J. C., Wadleigh, R., Paijmans, J., Hartmann, S., Barlow, A., Learner, H. & Hofreiter, M., 3 Feb 2020, In: Current Biology. p. 95-111

    Research output: Contribution to journal › Article › peer-review

  10. Clovis Age Western Stemmed Projectile Points and Human Coprolites at the Paisley Caves

    Jenkins, D. L., Davis, L. G., Stafford, T. W., Campos, P. F., Hockett, B., Jones, G. T., Cummings, L. S., Yost, C., Connolly, T. J., Yohe, R. M., Gibbons, S. C., Raghavan, M., Rasmussen, M., Paijmans, J. L. A., Hofreiter, M., Kemp, B. M., Barta, J. L., Monroe, C., Gilbert, M. T. P. & Willerslev, E., 13 Jul 2012, In: Science. 337, 6091, p. 223-228 6 p.

    Research output: Contribution to journal › Article › peer-review

  11. Complex admixture preceded and followed the extinction of wisent in the wild.

    Wecek, K., Hartmann, S., Paijmans, J., Taron, U. H., Xenikoudakis, G., Cahill, J. A., Heintzman, P. D., Shapiro, B., Baryshnikov, G., Bunevich, A. N., Crees, J. J., Dobosz, R., Manaserian, N., Okarma, H., Tokarska, M., Turvey, S., Wojcik, J. M., Zyla, W., Szymura, J. M., Hofreiter, M. & Barlow, A., 1 Mar 2017, In: Molecular Biology and Evolution. 34, 7, p. 598-612

    Research output: Contribution to journal › Article › peer-review

  12. Consensify: A Method for Generating Pseudohaploid Genome Sequences from Palaeogenomic Datasets with Reduced Error Rates.

    Barlow, A., Hartmann, S., Gonzalez, J., Hofreiter, M. & Paijmans, J., 2 Jan 2020, In: Genes. 11, 1

    Research output: Contribution to journal › Article › peer-review

  13. Published

    Diversity and Paleodemography of the Addax (Addax nasomaculatus), a Saharan Antelope on the Verge of Extinction

    Hempel, E., Westbury, M. V., Grau, J. H., Trinks, A., Paijmans, J., Kliver, S., Barlow, A., Mayer, F., Muller, J., Chen, L., Koepfli, K.-P., Hofreiter, M. & Bibi, F., 11 Aug 2021, In: Genes. 12, 8

    Research output: Contribution to journal › Article › peer-review

  14. Emergence of a Chimeric Globin Pseudogene and Increased Hemoglobin Oxygen Affinity Underlie the Evolution of Aquatic Specializations in Sirenia

    Signore, A. V., Paijmans, J. L. A., Hofreiter, M., Fago, A., Weber, R. E., Springer, M. S. & Campbell, K. L., 1 Jun 2019, In: Molecular Biology and Evolution. 36, 6, p. 1134-1147

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K., Hofreiter, M. & Paijmans, J., 23 Aug 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  16. Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse

    Bellone, R. R., Holl, H., Setaluri, V., Devi, S., Maddodi, N., Archer, S., Sandmeyer, L., Ludwig, A., Foerster, D., Pruvost, M., Reissmann, M., Bortfeldt, R., Adelson, D. L., Lim, S. L., Nelson, J., Haase, B., Engensteiner, M., Leeb, T., Forsyth, G., Mienaltowski, M. J., Mahadevan, P., Hofreiter, M., Paijmans, J. L. A., Gonzalez-Fortes, G., Grahn, B. & Brooks, S. A., 22 Oct 2013, In: PLoS ONE. 8, 10, p. e78280

    Research output: Contribution to journal › Article › peer-review

  17. Evolutionary history and extinction dynamics of extinct sabre- and scimitar-toothed cats based on ancient mitogenomes.

    Paijmans, J., Barnett, R., Gilbert, M. T. P., Zepeda-Mendoza, M. L., Reumer, J. W. F., de Vos, J., Zazula, G., Nagel, D., Baryshnikov, G., Leonard, J. A., Rohland, N., Westbury, M. V., Barlow, A. & Hofreiter, M., 6 Nov 2017, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  18. Historical biogeography of the leopard (Panthera pardus) and its extinct European populations.

    Paijmans, J., Barlow, A., Forster, D. W., Henneberger, K., Meyer, M., Nickel, B., Nagel, D., Havmoller, R. W., Baryshnikov, G., Joger, U., Rosendahl, W. & Hofreiter, M., 23 Oct 2018, In: BMC Evolutionary Biology. 18, 156.

    Research output: Contribution to journal › Article › peer-review

  19. Identifying the true number of specimens of the extinct blue antelope ( Hippotragus leucophaeus )

    Hempel, E., Bibi, F., Faith, J. T., Brink, J. S., Kalthoff, D. C., Kamminga, P., Paijmans, J. L. A., Westbury, M. V., Hofreiter, M. & Zachos, F. E., 22 Jan 2021, (E-pub ahead of print) In: Scientific Reports. 11, 1, 2100.

    Research output: Contribution to journal › Article › peer-review

  20. Impact of enrichment conditions on cross-species capture of fresh and degraded DNA

    Paijmans, J. L. A., Fickel, J., Courtiol, A., Hofreiter, M. & Förster, D. W., 1 Jan 2016, In: Molecular Ecology Resources. 16, 1, p. 42-55 14 p.

    Research output: Contribution to journal › Article › peer-review

  21. Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades

    Gaudry, M. J., Jastroch, M., Treberg, J. R., Hofreiter, M., Paijmans, J. L. A., Starrett, J., Wales, N., Signore, A. V., Springer, M. S. & Campbell, K. L., 7 Jul 2017, In: Science Advances. 3, 7, p. e1602878

    Research output: Contribution to journal › Article › peer-review

  22. Published

    Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence

    Gurke, M., Vidal-Gorosquieta, A., Paijmans, J., Wecek, K., Barlow, A., Gonzalez-Fortes, G., Hartmann, S., Grandal-d'Anglade, A. & Hofreiter, M., 28 Apr 2021, In: PLoS ONE.

    Research output: Contribution to journal › Article › peer-review

  23. Interordinal gene capture, the phylogenetic position of Steller’s sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia

    Springer, M. S., Signore, A. V., Paijmans, J. L. A., Vélez-Juarbe, J., Domning, D. P., Bauer, C. E., He, K., Crerar, L., Campos, P. F., Murphy, W. J., Meredith, R. W., Gatesy, J., Willerslev, E., MacPhee, R. D. E., Hofreiter, M. & Campbell, K. L., 1 Oct 2015, In: Molecular Phylogenetics and Evolution. 91, p. 178-193 16 p.

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Middle Pleistocene genome calibrates a revised evolutionary history of extinct cave bears

    Barlow, A., Paijmans, J., Alberti, F., Gasparyan, B., Bar-Oz, G., Pinhasi, R., Foronova, I., Puzachenko, A. Y., Pacher, M., Dalén, L., Baryshnikov, G. & Hofreiter, M., 26 Apr 2021, In: Current Biology.

    Research output: Contribution to journal › Article › peer-review

  25. Published

    Mitogenome phylogeny including data from additional subspecies provides new insights into the historical biogeography of the Eurasian lynx Lynx lynx

    Mengulluoglu, D., Ambarli, H., Barlow, A., Paijmans, J., Sayar, A. O., Emir, H., Kandemir, I., Hofer, H., Fickel, J. & Forster, D. W., 6 Aug 2021, In: Genes. 12, 8

    Research output: Contribution to journal › Article › peer-review

  26. Mitogenomic analyses from ancient DNA

    Paijmans, J. L. A., Gilbert, M. T. P. & Hofreiter, M., 1 Nov 2013, In: Molecular Phylogenetics and Evolution. 69, p. 404-416 13 p.

    Research output: Contribution to journal › Article › peer-review

  27. Morphological and genetic evidence for early Holocene cattle management in northeastern China

    Zhang, H., Paijmans, J. L. A., Chang, F., Wu, X., Chen, G., Lei, C., Yang, X., Wei, Z., Bradley, D. G., Orlando, L., O’Connor, T. & Hofreiter, M., 8 Nov 2013, In: Nature Communications. 4, 2755.

    Research output: Contribution to journal › Article › peer-review

  28. Published

    Museum DNA reveals a new, potentially extinct species of rinkhals (Serpentes: Elapidae: Hemachatus) from the Eastern Highlands of Zimbabwe

    Major, T., Renk, P., Reissig, J., Paijmans, J., Morris, E., Hofreiter, M., Barlow, A., Broadley, D. G. & Wüster, W., 27 Sept 2023, In: PLoS ONE. 18, 9, 19 p., e0291432.

    Research output: Contribution to journal › Article › peer-review

  29. Optimized DNA sampling of ancient bones using Computed Tomography scans

    Alberti, F., Gonzalez, J., Paijmans, J. L. A., Basler, N., Preick, M., Henneberger, K., Trinks, A., Rabeder, G., Conard, N. J., Münzel, S. C., Joger, U., Fritsch, G., Hildebrandt, T., Hofreiter, M. & Barlow, A., 1 Nov 2018, In: Molecular Ecology Resources. 18, 6, p. 1196-1208 13 p.

    Research output: Contribution to journal › Article › peer-review

  30. Palaeogenome reveals genetic contribution of extinct giant panda to extant populations.

    Sheng, G., Basler, N., Ji, X., Paijmans, J., Alberti, F., Preick, M., Hartmann, S., Westbury, M. V., Yuan, J., Jablonski, N. G., Xenikoudakis, G., Hou, X., Xiao, B., Liu, J.-H., Hofreiter, M., Lai, X. & Barlow, A., 20 May 2019, In: Current Biology. 29, 10, p. 1695-1700

    Research output: Contribution to journal › Article › peer-review

  31. Published

    Palaeogenomic data from a Late Pleistocene coprolite clarifies the phylogenetic position of Sicilian cave hyena

    Catalano, G., Iurino, D. A., Modi, A., Paijmans, J., Sardella, R., Sineo, L., Caramelli, D. & Barlow, A., 15 Sept 2024, In: Quaternary Science Reviews. 340, 108859.

    Research output: Contribution to journal › Article › peer-review

  32. Partial genomic survival of cave bears in living brown bears.

    Barlow, A., Cahill, J. A., Hartmann, S., Theunert, C., Xenikoudakis, G., Fortes, G. G., Paijmans, J., Rabeder, G., Frischauf, C., Grandal-d'Anglade, A., García-Vázquez, A., Murtskhvaladze, M., Saarma, U., Anijalg, P., Skrbinšek, T., Bertorelle, G., Gasparian, B., Bar-Oz, G., Pinhasi, R., Slatkin, M., Dalén, L., Shapiro, B. & Hofreiter, M., 27 Aug 2018, In: Nature Ecology and Evolution. 2, p. pages 1563–1570

    Research output: Contribution to journal › Article › peer-review

  33. Preliminary results on the molecular study of fish-eating by ‘trawling Myotis’ bat species in Europe

    Sommer, R. S., Hofreiter, M., Krüger, F., Siemers, B. M., Paijmans, J. L. A., Li, C. & Geiger, M. F., 27 Feb 2019, In: Vertebrate Zoology.

    Research output: Contribution to journal › Article › peer-review

  34. Published

    Recent increase in species-wide diversity after interspecies introgression in the highly endangered Iberian lynx

    Lucena-Perez, M., Paijmans, J., Nocete, F., Nadal, J., Detry, C., Dalén, L., Hofreiter, M., Barlow, A. & Godoy, J., 15 Jan 2024, In: Nature Ecology and Evolution.

    Research output: Contribution to journal › Article › peer-review

  35. Published

    Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens

    Straube, N., Lyra, M., Paijmans, J., Preick, M., Basler, N., Penner, J., Rodel, M.-O., Westbury, M. V., Haddad, C. F. B., Barlow, A. & Hofreiter, M., 1 Oct 2021, In: Molecular Ecology Resources.

    Research output: Contribution to journal › Article › peer-review

  36. Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species

    Förster, D. W., Bull, J. K., Lenz, D., Autenrieth, M., Paijmans, J. L. A., Kraus, R. H. S., Nowak, C., Bayerl, H., Kuehn, R., Saveljev, A. P., Sindičić, M., Hofreiter, M., Schmidt, K. & Fickel, J., 1 Nov 2018, In: Molecular Ecology Resources. 18, 6, p. 1356-1373 18 p.

    Research output: Contribution to journal › Article › peer-review

  37. Published

    Taxonomic Identification of Two Poorly Known Lantern Shark Species Based on Mitochondrial DNA From Wet-Collection Paratypes

    Agne, S., Preick, M., Yang, L., Thiel, R., Weigmann, S., Paijmans, J., Barlow, A., Hofreiter, M. & Straube, N., 30 Jun 2022, In: Frontiers in Ecology and Evolution. 10, 910009.

    Research output: Contribution to journal › Article › peer-review

  38. Testing of Alignment Parameters for Ancient Samples: Evaluating and optimising mapping parameters for ancient samples using the TAPAS tool.

    Taron, U. H., Lell, M., Barlow, A. & Paijmans, J., 13 Mar 2018, In: Genes. 9, 3, 157.

    Research output: Contribution to journal › Article › peer-review

  39. Published

    The earliest domestic cat on the Silk Road

    Haruda, A. F., Miller, A. R. V., Paijmans, J., Barlow, A., Tazhekeyev, A., Bailov, S., Hesse, Y., Preick, M., King, T., Thomas, R., Harke, H. & Arzhantseva, L., 9 Jul 2020, In: Scientific Reports.

    Research output: Contribution to journal › Article › peer-review

  40. The future of ancient DNA: Technical advances and conceptual shifts.

    Hofreiter, M., Paijmans, J., Goodchild, H., Speller, C. F., Barlow, A., Fortes, G. G., Thomas, J. A., Ludwig, A. & Collins, M. J., 1 Mar 2015, In: BioEssays. 37, p. 284-293

    Research output: Contribution to journal › Article › peer-review

  41. Tropical ancient DNA reveals relationships of extinct Bahamian giant tortoise.

    Kehlmaier, C., Barlow, A., Hastings, A. K., Vamberger, M., Paijmans, J., Steadman, D., Albury, N. A., Franz, R., Hofreiter, M. & Fritz, U., 11 Jan 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1846

    Research output: Contribution to journal › Article › peer-review

  42. Chapter › Research › Not peer-reviewed

  43. Analysis of whole mitogenomes from ancient samples

    Fortes, G. G. & Paijmans, J. L. A., 2016, Whole genome amplification. Kroneis, T. (ed.). Humana Press, USA, (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  44. Application of Solid-State Capture for the Retrieval of Small-to-Medium Sized Target Loci from Ancient DNA

    Paijmans, J. L. A., González Fortes, G. & Förster, D. W., 16 Mar 2019, Ancient DNA. Shapiro, B., Barlow, A., Heintzman, P. D., Hofreiter, M., Paijmans, J. L. A. & Soares, A. E. R. (eds.). New York, NY: Springer New York, Vol. 1963. p. 129-139 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  45. Double-stranded library preparation for ancient and other degraded samples

    Henneberger, K., Barlow, A. & Paijmans, J., 16 Mar 2019, Ancient DNA: methods and protocols. Second Edition. Humana New York, NY, p. 65-73

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  46. Whole-Genome Capture of Ancient DNA Using Homemade Baits

    Fortes, G. & Paijmans, J. L. A., 2019, Methods in Molecular Biology (Clifton, N.J.). Vol. 1963. p. 93-105 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  47. Book › Research › Not peer-reviewed

  48. Ancient DNA: methods and protocols. Second Edition.

    Shapiro, B. (Editor), Barlow, A. (Editor), Heintzman, P. D. (Editor), Hofreiter, M. (Editor), Paijmans, J. (Editor) & Soares, A. E. (Editor), 16 Mar 2019, Humana New York, NY. (Methods in Molecular Biology)

    Research output: Book/Report › Book

  49. Preprint › Research

  50. Sequencing single-stranded libraries on the Illumina NextSeq 500 platform.

    Paijmans, J., Baleka, S., Henneberger, K., Taron, U. H., Trinks, A., Westbury, M. V. & Barlow, A., 29 Nov 2017.

    Research output: Working paper › Preprint