Recognising specific foods in MRI scans using CNN and visualisation

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Standard Standard

Recognising specific foods in MRI scans using CNN and visualisation. / Gardner, Joshua; Al-Maliki, Shatha; Lutton, Evelyne; Boue, Francois; Vidal, Franck.

Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association, 2020.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

HarvardHarvard

Gardner, J, Al-Maliki, S, Lutton, E, Boue, F & Vidal, F 2020, Recognising specific foods in MRI scans using CNN and visualisation. in Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association. https://doi.org/10.2312/cgvc.20201145

APA

Gardner, J., Al-Maliki, S., Lutton, E., Boue, F., & Vidal, F. (2020). Recognising specific foods in MRI scans using CNN and visualisation. In Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020) The Eurographics Association. https://doi.org/10.2312/cgvc.20201145

CBE

Gardner J, Al-Maliki S, Lutton E, Boue F, Vidal F. 2020. Recognising specific foods in MRI scans using CNN and visualisation. In Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association. https://doi.org/10.2312/cgvc.20201145

MLA

Gardner, Joshua et al. "Recognising specific foods in MRI scans using CNN and visualisation". Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association. 2020. https://doi.org/10.2312/cgvc.20201145

VancouverVancouver

Gardner J, Al-Maliki S, Lutton E, Boue F, Vidal F. Recognising specific foods in MRI scans using CNN and visualisation. In Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association. 2020 https://doi.org/10.2312/cgvc.20201145

Author

Gardner, Joshua ; Al-Maliki, Shatha ; Lutton, Evelyne ; Boue, Francois ; Vidal, Franck. / Recognising specific foods in MRI scans using CNN and visualisation. Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020). The Eurographics Association, 2020.

RIS

TY - GEN

T1 - Recognising specific foods in MRI scans using CNN and visualisation

AU - Gardner, Joshua

AU - Al-Maliki, Shatha

AU - Lutton, Evelyne

AU - Boue, Francois

AU - Vidal, Franck

PY - 2020

Y1 - 2020

N2 - This work is part of an experimental project aiming at understanding the kinetics of human gastric emptying. For this purpose magnetic resonance imaging (MRI) images of the stomach of healthy volunteers have been acquired using a state-of-art scanner with an adapted protocol. The challenge is to follow the stomach content (food) in the data. Frozen garden peas and petits pois have been chosen as experimental proof-of-concept as their shapes are well defined and are not altered in the early stages of digestion. The food recognition is performed as a binary classification implemented using a deep convolutional neural network (CNN). Input hyperparameters, here image size and number of epochs, were exhaustively evaluated to identify the combination of parameters that produces the best classification. The results have been analysed using interactive visualisation. We prove in this paper that advances in computer vision and machine learning can be deployed to automatically label the content of the stomach even when the amount of training data is low and the data imbalanced.Interactive visualisation helps identify the most effective combinations of hyperparameters to maximise accuracy, precision,recall and F1score, leaving the end-user evaluate the possible trade-off between these metrics. Food recognition in MRI scans through neural network produced an accuracy of 0.97, precision of 0.91, recall of 0.86 and F1score of 0.89, all close to 1.

AB - This work is part of an experimental project aiming at understanding the kinetics of human gastric emptying. For this purpose magnetic resonance imaging (MRI) images of the stomach of healthy volunteers have been acquired using a state-of-art scanner with an adapted protocol. The challenge is to follow the stomach content (food) in the data. Frozen garden peas and petits pois have been chosen as experimental proof-of-concept as their shapes are well defined and are not altered in the early stages of digestion. The food recognition is performed as a binary classification implemented using a deep convolutional neural network (CNN). Input hyperparameters, here image size and number of epochs, were exhaustively evaluated to identify the combination of parameters that produces the best classification. The results have been analysed using interactive visualisation. We prove in this paper that advances in computer vision and machine learning can be deployed to automatically label the content of the stomach even when the amount of training data is low and the data imbalanced.Interactive visualisation helps identify the most effective combinations of hyperparameters to maximise accuracy, precision,recall and F1score, leaving the end-user evaluate the possible trade-off between these metrics. Food recognition in MRI scans through neural network produced an accuracy of 0.97, precision of 0.91, recall of 0.86 and F1score of 0.89, all close to 1.

U2 - https://doi.org/10.2312/cgvc.20201145

DO - https://doi.org/10.2312/cgvc.20201145

M3 - Conference contribution

BT - Proceedings of Computer Graphics & Visual Computing 2020 (CGVC 2020)

PB - The Eurographics Association

ER -