A new chromosome-assigned Mongolian gerbil genome allows characterization of complete centromeres and a fully heterochromatic chromosome

Brekke, T. D., Papadopulos, A. S. T., Julia, E., Fornas, O., Fu, B., Yang, F., de la Fuente, R., Page, J., Baril, T., Hayward, A. & Mulley, J., Mai 2023, Yn: Molecular Biology and Evolution. 40, 5, msad115.

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Accounting for extinction dynamics unifies the geological and biological histories of Indo-Australian Archipelago

Herrera-Alsina, L., Lancaster, L. T., Algar, A. C., Bocedi, G., Papadopulos, A. S. T., Gubry-Rangin, C., Osborne, O. G., Mynard, P., Creer, S., Villegas-Patraca, R., Made Sudiana, I., Fahri, F., Lupiyaningdyah, P., Nangoy, M., Iskandar, D. T., Juliandi, B., Burslem, D. F. R. P. & Travis, J. M. J., 30 Medi 2024, Yn: Proceedings of the Royal Society B: Biological Sciences. 291, 2031, t. 20240966

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Ancient geological dynamics impact neutral biodiversity accumulation and are detectable in phylogenetic reconstructions

Herrera‐Alsina, L., Algar, A. C., Bocedi, G., Gubry‐Rangin, C., Lancaster, L., Mynard, P., Osborne, O., Papadopulos, A. S. T., Creer, S., Nangoy, M., Fahri, F., Lupiyaningdyah, P., Sudiana, I. M., Juliandi, B. & Travis, J. M. J., Awst 2021, Yn: Global Ecology and Biogeography. 30, 8, t. 1633-1642 10 t.

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Ecological speciation in sympatric palms: 3. Genetic map reveals genomic islands underlying species divergence in Howea

Papadopulos, A. S. T., Igea, J., Dunning, L. T., Osborne, O., Quan, X., Pellicer, J., Turnbull, C., Hutton, I., Baker, W. J., Butlin, R. K. & Savolainen, V., Medi 2019, Yn: Evolution. 73, 9, t. 1986-1995 10 t.

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Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow

Papadopulos, A. S. T., Igea, J., Smith, T. P., Hutton, I., Baker, W. J., Butlin, R. K. & Savolainen, V., Medi 2019, Yn: Evolution. 73, 9, t. 1996-2002 7 t.

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Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen

Lighten, J., Papadopulos, A. S. T., Mohammed, R. S., Ward, B. J., Paterson, I., Ballie, L., Bradbury, I. R., Hendry, A. P., Bentzen, P. & van Oosterhout, C., 2017, Yn: Nature Communications. 1294.

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Fauxcurrence: simulating multi-species occurrences for null models in species distribution modelling and biogeography

Osborne, O., Fell, H. G., Atkins, H., Tol, J. V., Phillips, D., Herrerra-Alsina, L., Mynard, P., Bocedi, G., Gubry-Rangin, C., Lancaster, L. T., Creer, S., Nangoy, M., Fahri, F., Lupiyaningdyah, P., Sudiana, I. M., Juliandi, B., Travis, J., Papadopulos, A. S. T. & Algar, A. C., Gorff 2022, Yn: Ecography. 2022, 7, e05880.

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Field-based species identification of closely-related plants using real-time nanopore sequencing

Parker, J., Helmstetter, A. J., Davey, D., Wilkinson, T. & Papadopulos, A. S. T., Awst 2017, Yn: Scientific Reports. 7, 8345.

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Genetic assimilation of ancestral plasticity during parallel adaptation to Zinc contamination in Silene uniflora

Wood, D., Holmberg, J., Osborne, O., Helmstetter, A. J., Dunning, L. T., Ellison, A., Smith, R. J., Lighten, J. & Papadopulos, A. S. T., Maw 2023, Yn: Nature Ecology and Evolution. 7, 3, t. 414-423 10 t.

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Geographical structure of genetic diversity in Loudetia simplex (Poaceae) in Madagascar and South Africa

Hagl, P. A., Gargiulo, R., Fay, M. F., Solofondranohatra, C., Salmona, J., Suescun, U., Rakotomalala, N., Lehmann, C. E. R., Besnard, G., Papadopulos, A. S. T. & Vorontsova, M. S., 15 Ebr 2021, Yn: Botanical Journal of the Linnean Society. 196, 1, t. 81-99 19 t.

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Hybridisation and chloroplast capture between distinct Themeda triandra lineages in Australia

Dunning, L. T., Olofsson, J., Papadopulos, A. S. T., Hibdige, S. G. S., Hidalgo, O., Leitch, I. J., Baleeiro, P. C., Ntshangase, S., Barker, N. & Jobson, R. W., Tach 2022, Yn: Molecular Ecology. 31, 22, t. 5846-5860 15 t.

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Impact of Phylogenetic Tree Completeness and Misspecification of Sampling Fractions on Trait Dependent Diversification Models

Mynard, P., Algar, A., Lancaster, L. T., Bocedi, G., Fahri, F., Gubry-Rangin, C., Lupiyaningdyah, P., Nangoy, M., Osborne, O., Papadopulos, A. S. T., Sudiana, I. M., Juliandi, B., Travis, J. & Herrera-Alsina, L., 19 Mai 2023, Yn: Systematic Biology. 72, 1, t. 106-119 14 t.

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Introduction to special issue: the ecology and evolution of plants in extreme environments

Picó, F. X., Abbott, R. J., Llambi, L. D., Rajakaruna, N., Papadopulos, A. S. T. & Nagy, L., Ion 2023, Yn: Plant Ecology & Diversity. 15, 5-6, t. 179-182 4 t.

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Madagascar's extraordinary biodiversity: Evolution, distribution, and use

Antonelli, A., Smith, R. J., Perrigo, A. L., Crottini, A., Hackel, J., Testo, W., Farooq, H., Torres Jiménez, M. F., Andela, N., Andermann, T., Andriamanohera, A. M., Andriambololonera, S., Bachman, S. P., Bacon, C. D., Baker, W. J., Belluardo, F., Birkinshaw, C., Borrell, J. S., Cable, S., Canales, N. A., Carrillo, J. D., Clegg, R., Clubbe, C., Cooke, R. S. C., Damasco, G., Dhanda, S., Edler, D., Faurby, S., de Lima Ferreira, P., Fisher, B. L., Forest, F., Gardiner, L. M., Goodman, S. M., Grace, O. M., Guedes, T. B., Henniges, M. C., Hill, R., Lehmann, C. E. R., Lowry, P. P., Marline, L., Matos-Maraví, P., Moat, J., Neves, B., Nogueira, M. G. C., Onstein, R. E., Papadopulos, A. S. T., Perez-Escobar, O. A., Phelps, L. N., Phillipson, P. B., Pironon, S., Przelomska, N. A. S., Rabarimanarivo, M., Rabehevitra, D., Raharimampionona, J., Rajaonah, M. T., Rajaonary, F., Rajaovelona, L. R., Rakotoarinivo, M., Rakotoarisoa, A. A., Rakotoarisoa, S. E., Rakotomalala, H. N., Rakotonasolo, F., Ralaiveloarisoa, B. A., Ramirez-Herranz, M., Randriamamonjy, J. E. N., Randriamboavonjy, T., Randrianasolo, V., Rasolohery, A., Ratsifandrihamanana, A. N., Ravololomanana, N., Razafiniary, V., Razanajatovo, H., Razanatsoa, E., Rivers, M., Sayol, F., Silvestro, D., Vorontsova, M. S., Walker, K., Walker, B. E., Wilkin, P., Williams, J., Ziegler, T., Zizka, A. & Ralimanana, H., 2 Rhag 2022, Yn: Science. 378, 6623, eabf0869.

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Maintenance and expansion of genetic and trait variation following domestication in a clonal crop

White, O. W., Biswas, M. K., Abebe, W. M., Dussert, Y., Kadebe, F., Nichols, R. A., Buggs, R. J. A., Demissew, S., Woldeyes, F., Papadopulos, A. S. T., Schwarzacher, T., Heslop-Harrison, P. J. S., Wilkin, P. & Borrell, J. S., Awst 2023, Yn: Molecular Ecology. 32, 15, t. 4165-4180

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Mapping the root systems of individual trees in a natural community using genotyping-by-sequencing

Osborne, O., Dobreva, M. P., Papadopulos, A. S. T., de Moura, M. S. B., Brunello, A. T., de Queiroz, L. P., Pennington, R. T., Lloyd, J. & Savolainen, V., 1 Mai 2023, Yn: New Phytologist. 238, 3, t. 1305-1317 13 t.

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Molecular Clocks and Archeogenomics of a Late Period Egyptian Date Palm Leaf Reveal Introgression from Wild Relatives and Add Timestamps on the Domestication

Pérez-Escobar, O. A., Bellott, S., Przelomska, N. A. S., Flowers, J. M., Nesbitt, M., Ryan, P., Gutaker, R. M., Gros-Balthazard, M., Wells, T., Kuhnhäuser, B. G., Schley, R., Bogarin, D., Dodsworth, S., Diaz, R., Lehmann, M., Petoe, P., Eiserhardt, W. L., Preick, M., Hofreiter, M., Hajdas, I., Purugganan, M., Antonelli, A., Gravendeel, B., Leitch, I. J., Jimenez, M. F. T., Papadopulos, A. S. T., Chomicki, G., Renner, S. S. & Baker, W. J., Hyd 2021, Yn: Molecular Biology and Evolution. 38, 10, t. 4475-4492 18 t., msab188.

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Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution

Papadopulos, A. S. T., Helmstetter, A. J., Osborne, O., Comeault, A., Wood, D., Straw, E. A., Mason, L., Fay, M. F., Parker, J., Dunning, L. T., Foote, A., Smith, R. J. & Lighten, J., Medi 2021, Yn: Molecular Biology and Evolution. 38, 9, t. 3724-3736 13 t.

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Safeguarding Imperiled Biodiversity and Evolutionary Processes in the Wallacea Center of Endemism

Struebig, M., Aninta, S. G., Beger, M., Bani, A., Barus, H., Brace, S., Davies, Z., De Brauwer, M., Diele, K., Djakiman, C., Djamaluddin, R., Drinkwater, R., Drumbell, A., Evans, D., Fusi, M., Herrera-Alsina, L., Iksander, D. T., Jompa, J., Juliandi, B., Lancaster, L. T., Limmon, G., Lindawati , Lo, M. G. Y., Lupiyaningdyah , P., McCannon, M., Meijaard, E., Mitchell, S. L., Mumbunan, S., O'Connell, D., Osborne, O., Papadopulos, A. S. T., Rahajoe, J. S., Rosaria, Rossiter, S. J., Rugayah, Rustiami, H., Salzmann, U., Sheherazade, Sudiana, I. M., Sukara, E., Tasirin, J. S., Tjoa, A., Travis, J. M. J., Trethowan, L., Trianto, A., Utteridge, T., Voigt, M., Winarni, N., Zakaria, Z., Edwards, D. P., Frantz, L. & Supriatna, J., Tach 2022, Yn: BioScience. 72, 11, t. 1118-1130 13 t.

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Seed size and its rate of evolution correlate with species diversification across angiosperms

Igea, J., Miller, E. F., Papadopulos, A. S. T. & Tanentzap, A. J., 2017, Yn: PLoS Biology. 15, 7, e2002792.

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Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna

Wong, E. L. Y., Nevado, B., Osborne, O. G., Papadopulos, A. S. T., Bridle, J. R., Hiscock, S. J. & Filatov, D. A., Ion 2020, Yn: Molecular Ecology. 29, 2, t. 394-412 19 t.

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The demographic history of Madagascan micro-endemics: have rare species always been rare?

Helmstetter, A. J., Cable, S., Rakotonasolo, F., Rabarijaona, R., Rakotoarinivo, M., Eiserhardt, W. L., Baker, W. J. & Papadopulos, A. S. T., 29 Medi 2021, Yn: Proceedings of the Royal Society B: Biological Sciences. 288, 1959, 20210957.

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The missing link in biogeographic reconstruction: Accounting for lineage extinction rewrites history

Herrera‐Alsina, L., Algar, A. C., Lancaster, L. T., Ornelas, J. F., Bocedi, G., Papadopulos, A. S. T., Gubry-Rangin, C., Osborne, O., Mynard, P., Sudiana, I. M., Lupiyaningdyah, P., Juliandi, B. & Travis, J., Tach 2022, Yn: Journal of Biogeography. 49, 11, t. 1941-1951 11 t.

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Trait evolution and historical biogeography shape assemblages of annual killifish

Helmstetter, A. J., Papadopulos, A. S. T., Igea, J. & Van Dooren, T. J. M., Medi 2020, Yn: Journal of Biogeography. 47, 9, t. 1955-1965

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Inference of natural selection from ancient DNA

Dehasque, M., Ávila-Arcos, M. C., Díez‐del‐Molino, D., Fumagalli, M., Guschanski, K., Lorenzen, E., Malaspinas, A.-S., Marques-Bonet, T., Martin, M. D., Murray, G., Papadopulos, A. S. T., Therkildsen, N. O., Wegmann, D., Dalén, L. & Foote, A., Ebr 2020, Yn: Evolution Letters. 4, 2, t. 94-108 15 t.

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Madagascar's extraordinary biodiversity: Threats and opportunities

Ralimanana, H., Perrigo, A. L., Smith, R. J., Borrell, J. S., Faurby, S., Rajaonah, M. T., Randriamboavonjy, T., Vorontsova, M. S., Cooke, R. S. C., Phelps, L. N., Sayol, F., Andela, N., Andermann, T., Andriamanohera, A. M., Andriambololonera, S., Bachman, S. P., Bacon, C. D., Baker, W. J., Belluardo, F., Birkinshaw, C., Cable, S., Canales, N. A., Carrillo, J. D., Clegg, R., Clubbe, C., Crottini, A., Damasco, G., Dhanda, S., Edler, D., Farooq, H., de Lima Ferreira, P., Fisher, B. L., Forest, F., Gardiner, L. M., Goodman, S. M., Grace, O. M., Guedes, T. B., Hackel, J., Henniges, M. C., Hill, R., Lehmann, C. E. R., Lowry, P. P., Marline, L., Matos-Maraví, P., Moat, J., Neves, B., Nogueira, M. G. C., Onstein, R. E., Papadopulos, A. S. T., Perez-Escobar, O. A., Phillipson, P. B., Pironon, S., Przelomska, N. A. S., Rabarimanarivo, M., Rabehevitra, D., Raharimampionona, J., Rajaonary, F., Rajaovelona, L. R., Rakotoarinivo, M., Rakotoarisoa, A. A., Rakotoarisoa, S. E., Rakotomalala, H. N., Rakotonasolo, F., Ralaiveloarisoa, B. A., Ramirez-Herranz, M., Randriamamonjy, J. E. N., Randrianasolo, V., Rasolohery, A., Ratsifandrihamanana, A. N., Ravololomanana, N., Razafiniary, V., Razanajatovo, H., Razanatsoa, E., Rivers, M., Silvestro, D., Testo, W., Torres Jiménez, M. F., Walker, K., Walker, B. E., Wilkin, P., Williams, J., Ziegler, T., Zizka, A. & Antonelli, A., 2 Rhag 2022, Yn: Science. 378, 6623, eadf1466.

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