Cuniculiplasmataceae, their ecogenomic and metabolic patterns and interactions with ‘ARMAN’

Golyshina, O. V., Bargiela, R. & Golyshin, P. N., Ion 2019, Yn: Extremophiles. 23, 1, t. 1-7 7 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez-Guerra, A., Thambisetty, S., de la Calle, F., Golyshina V, O., Yakimov, M. M., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., McMeel, O., Calewaert, J.-B., Tonne, N., Golyshin, P. N. & Consortium, I., 1 Ion 2019, Yn: FEMS Microbiology Letters. 366, 1, fny285.

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Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data

Bargiela, R., Gertler, C., Mapelli, F., Magagnini, M., Chen, J., Daffonchio, D., Golyshin, P. & Ferrer, M., 24 Tach 2015, Yn: Frontiers in Microbiology. 6

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Degradation of Hydrocarbons and Heavy Metal Reduction by Marine Bacteria in Highly Contaminated Sediments

Dell'Anno, F., Brunet, C., van Zyl, L. J., Trindade, M., Golyshin, P., Dell'Anno, A., Ianora, A. & Sansone, C., 11 Medi 2020, Yn: Microorganisms . 8, 9

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Determinants and prediction of esterase substrate promiscuity patterns

Martínez-Martínez, M., Coscolín, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernández, J., Bollinger, A., Thies, S., Méndez-García, C., Popovic, A., Brown, G., Chernikova, T., García-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., del Pozo, M. V., Stokke, R., Steen, I. H., Cui, H., Xu, X., Nocek, B., Alcaide, M., Disasto, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernández-Guerra, A., Glockner, F. O., Golyshina, O., Yakimov, M. M., Savchenko, A., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., Golyshin, P., Guallar, V. & Ferrer, M., 2018, Yn: ACS Chemical Biology. 13, 1, t. 225-234

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Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats

Sorokin, D. Y., Messina, E., Smedile, F., Roman, P., Sinninghe Damste, J. S., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Kublanov, I. V., Samarov, N. I., Toshchakov, S. V., La Cono, V. & Yakimov, M. M., 20 Ion 2017, Yn: ISME Journal. 11, t. 1245-1260

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

Sorokin, D. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P., Galinski, E. A., Ciordia, S., Mena, M. C., Merkel, A. Y., Wolf, Y. I., van Loosdrecht, M. C. M. & Koonin, E. V., Mai 2017, Yn: Nature Microbiology. 2, 17081 .

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Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

Chernyh, N. A., Neukirchen, S., Frolov, E. N., Sousa, F. L., Miroshnichenko, M. L., Merkel, A. Y., Pimenov, N. V., Sorokin, D. Y., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Lebedinsky, A. V., Cardoso Pereira, I. A. & Bonch-Osmolovskaya, E. A., Tach 2020, Yn: Nature Microbiology. 5, 11, t. 1428-+

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Diversity of “Ca. Micrarchaeota” in two distinct types of acidic environments and their associations with Thermoplasmatales

Golyshina, O., Bargiela, R., Toshchakov, S. V., Chernyh, N. A., Ramayah, S., Korzhenkov, A. A., Kublanov, I. V. & Golyshin, P., 15 Meh 2019, Yn: Genes. 10, 6, 461.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Diversity of facultatively anaerobic microscopic mycelial fungi in soils.

Golyshin, P., Kurakov, A. V., Lavrent'ev, R. B., Nechitailo, T. Y., Golyshin, P. N. & Zvyagintsev, D. G., 1 Ion 2008, Yn: Microbiology. 77, 1, t. 90-98

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Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species.

Beloqui, A., Nechitaylo, T. Y., Lopez-Cortes, N., Ghazi, A., Guazzaroni, M. E., Polaina, J., Strittmatter, A. W., Reva, O., Waliczek, A., Yakimov, M. M., Golyshina, O. V., Ferrer, M. & Golyshin, P. N., 1 Medi 2010, Yn: Applied and Environmental Microbiology. 76, 17, t. 5934-5946

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Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

Placido, A., Hai, T., Ferrer, M., Chernikova, T. N., Distaso, M. A., Armstrong, D., Yakunin, A. F., Toshchakov, S. V., Yakimov, M. M., Kublanov, I. V., Golyshina, O., Pesole, G., Ceci, L. R. & Golyshin, P., 1 Rhag 2015, Yn: Applied Microbiology and Biotechnology. 99, 23, t. 10031-10046

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Dve formy vnekletochnoĭ nizkomolekuliarnoĭ ribonukleazy Bacillus sp. BCF 247. Vydelenie i kharakteristika belka

Dement'ev, A. A., Golyshin, P. N., Riabchenko, N. F., Pustobaev, V. N. & Shliapnikov, S. V., Awst 1993, Yn: Biokhimiia (Moscow, Russia). 58, 8, t. 1258-65 8 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Effect of the earthworms lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo, T. Y., Yakimov, M. M., Godinho, M., Timmis, K. N., Belogolova, E., Byzov, B. A., Kurakov, A. V., Jones, D. L. & Golyshin, P. N., 1 Ebr 2010, Yn: Microbial Ecology. 59, 3, t. 574-587

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Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation

Golyshin, P., Genovese, M., Crisafi, F., Denaro, R., Cappello, S., Russo, D., Calogero, R., Santisi, S., Catalfamo, M., Modica, A., Smedile, F., Genovese, L., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., 14 Ebr 2014, Yn: Frontiers in Microbiology.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

Sorokin, D. Y., Kublanov, I. V., Gavrilov, S. N., Rojo, D., Roman, P., Golyshin, P., Slepak, V. Z., Smedile, F., Ferrer, M., Messina, E., La Cono, V. & Yakimov, M. M., Ion 2016, Yn: ISME Journal. 10, t. 240-252

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Marasco, R., Fusi, M., Coscolín, C., Borozzi, A., Almendral, D., Bargiela, R., Gohlke neé Nutschel, C., Dittrich, J., Gohlke, H., Matesanz, R., Sanchez-Carrillo, S., Mapelli, F., Chernikova, T., Golyshin, P., Ferrer, M. & Daffonchio, D., 24 Chwef 2023, Yn: Nature Communications. 14, 1, 1045.

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Enzymes for consumer products to achieve climate neutrality

Molina-Espeja, P., Sanz-Aparicio, J., Golyshin, P., Robles-Martin, A., Guallar, V., Beltrametti, F., Muller, M., Yakimov, M., Modregger, J., van Logchem, M., Corvini, P., Shahgaldian, P., Degering, C., Wieland, S., Timm, A., de Carvalho, C. C. C. R., Re, I., Daniotti, S., Thies, S., Jaeger, K.-E., Chow, J., Streit, W. R., Lottenbach, R., Rosch, R., Ansari, N. & Ferrer, M., 29 Ebr 2023, Yn: Oxford Open Climate Change. 3, 1, kgad003.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends

Ferrer, M., Martinez, M., Bargiela, R., Streit, W. R., Golyshina, O. & Golyshin, P., 1 Ion 2016, Yn: Microbial Biotechnology. 9, 1, t. 22-34

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Evaluating agar-plating and dilution-to-extinction isolation methods for generating oak-associated microbial culture collections

Ordonez Ordonez, A., Hussain, U., Cambon, M., Golyshin, P., Downie, J. & McDonald, J., 11 Chwef 2025, Yn: ISME Communications. 5, 1, ycaf019.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Evolutionary patterns of archaea predominant in acidic environment

Bargiela, R., Korzhenkov, A. A., McIntosh, O., Toshchakov, S. V., Yakimov, M., Golyshin, P. & Golyshina, O., 18 Gorff 2023, Yn: Environmental Microbiome. 18, 1, 61.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Expression of a temperature-sensitive esterase in anovel chaperone-based Escherichia coli strain.

Ferrer, M., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 Awst 2004, Yn: Applied and Environmental Microbiology. 70, 8, t. 4499-4504

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Fate of pathogens in a simulated bioreduction system for livestock carcasses

Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G. & Williams, A. P., 1 Mai 2012, Yn: Waste Management. 32, 5, t. 933-938

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Fate of prions in soil: degradation of recombinant prion in aqueous extracts from soil and casts of two earthworm species.

Golyshin, P., Nechitaylo, T. Y., Timmis, K. N., Byzov, B. A., Kurakov, A. V., Belogolova, E., Jones, D. L., Ferrer, M. & Golyshin, P. N., 1 Gorff 2010, Yn: Soil Biology and Biochemistry. 42, 7, t. 1168-1171

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Ferroplasma acidiphilum gen. nov., sp nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea.

Golyshina, O. V., Pivovarova, T. A., Karavaiko, G. I., Kondratéva, T. F., Moore, E. R., Abraham, W. R., Lünsdorf, H., Timmis, K. N., Yakimov, M. M. & Golyshin, P. N., 1 Mai 2000, Yn: International Journal of Systematic and Evolutionary Microbiology. 50 , 3, t. 997-1006 10 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago)

Bortoluzzi, G., Romeo, T., La Cono, V., La Spada, G., Smedile, F., Esposito, V., Sabatino, G., Di Bella, M., Canese, S., Scotti, G., Bo, M., Giuliano, L., Golyshin, P., Jones, D., Yakimov, M. M. & Andaloro, F., Medi 2017, Yn: Geobiology. 15, 5, t. 664-677

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Field response of N2O emissions, microbial communities, soil biochemical processes and winter barley growth to the addition of conventional and biodegradable microplastics

Greenfield, L. M., Graf, M., Rengaraj, S., Bargiela, R., Williams, G., Golyshin, P. N., Chadwick, D. R. & Jones, D. L., 15 Medi 2022, Yn: Agriculture, Ecosystems and Environment. 336, 108023.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Field-based assessment of the effect of conventional and biodegradable plastic mulch film on nitrogen partitioning, soil microbial diversity, and maize biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Golyshin, P., Evershed, R. P., Lloyd, C. E. M., Williams, G., Chadwick, D. & Jones, D. L., 1 Hyd 2024, Yn: Applied Soil Ecology. 202, 105595.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Functional Metagenomics Unveils a Multifunctional Glycosyl Hydrolase from the Family 43 Catalysing the Breakdown of Plant Polymers in the Calf Rumen

Ferrer, M., Ghazi, A., Beloqui, A., Vieites, J. M., Lopez-Cortes, N., Marın-Navarro, J., Nechitaylo, T. Y., Guazzaroni, M. E., Polaina, J., Waliczek, A., Chernikova, T. N., Reva, O. N., Golyshina, O. V. & Golyshin, P. N., 25 Meh 2012, Yn: PLoS ONE. 7, 6, t. e38134

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Functional consequences of single:double ring transitions in chaperonins: life in the cold.

Ferrer, M., Lunsdorf, H., Chernikova, T. N., Yakimov, M., Timmis, K. N. & Golyshin, P. N., 1 Gorff 2004, Yn: Molecular Microbiology. 53, 1, t. 167-182

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx

Alcaide, M., Messina, E., Richter, M., Bargiela, R., Peplies, J., Huws, S. A., Newbold, C. J., Golyshin, P. N., Simón, M. A., López, G., Yakimov, M. M. & Ferrer, M., 12 Rhag 2012, Yn: PLoS ONE. 7, 12, t. e51521

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Maw 2020, Yn: Nature Catalysis. 3, 3, t. 319-328

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Ebr 2013, Yn: Genome Announcements. 1, 2, t. e00141-13

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Gorff 2013, Yn: Nature Communications. 4, t. 2156

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Rhag 2003, Yn: Journal of Biotechnology. 106, 2-3, t. 215-220

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Hyd 2015, Yn: Marine Genomics. 25, t. 11-13

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F.-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Gorff 2006, Yn: Nature Biotechnology. 24, 8, t. 997-1004 8 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genomic and mechanistic insights into the biodegradation of organic pollutants.

Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Meh 2004, Yn: Current Opinion in Biotechnology. 15, 3, t. 215-224

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Medi 2010, Yn: Microbial Biotechnology. 3, 5, t. 595-606 12 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

Werner, J., Ferrer, M., Michel, G., Mann, A. J., Huang, S., Juarez, S., Ciordia, S., Albar, J. P., Alcaide, M., La Cono, V., Yakimov, M. M., Antunes, A., Taborda, M., da Costa, M. S., Hai, T., Glockner, F. O., Golyshina, O. V., Golyshin, P. N. & Teeling, H., 1 Awst 2014, Yn: Environmental Microbiology. 16, 8, t. 2525-2537

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Harnessing extremophilic carboxylesterases for applications in polyester depolymerisation and plastic waste recycling

Williams, G., Ma, H., Khusnutdinova, A., Yakunin, A. & Golyshin, P., Awst 2023, Yn: Essays in Biochemistry. 67, 4, t. 715-729 15 t., EBC20220255.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid