100 years of anthropogenic impact causes changes in freshwater functional biodiversity

Eastwood, N., Zhou, J., Derelle, R., Abdallah, M.A.-E., Stubbings, W. A., Jia, Y., Crawford, S. E., Davidson, T. A., Colbourne, J. K., Creer, S., Bik, H., Hollert, H. & Orsini, L., 7 Tach 2023, Yn: Elife. 12

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A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon, Salmo salar L.

Harvey, A., Glover, K. A., Taylor, M., Creer, S. & Carvalho, G., 1 Maw 2016, Yn: Evolutionary Applications. 9, 3, t. 435-449

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A communal catalogue reveals Earth's multiscale microbial diversity

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A critique of Rossberg et al.: noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets

Morgan, M. J., Bass, D., Bik, H., Birky, C. W., Blaxter, M., Crisp, M. D., Derycke, S., Fitch, D., Fonteaneto, D., Hardy, C. M., King, A. J., Kiontke, K. C., Moens, T., Pawlowski, J. W., Porazinska, D., Tang, C. Q., Thomas, W. K., Yeates, D. K. & Creer, S., 26 Maw 2014, Yn: Proceedings of the Royal Society B: Biological Sciences. 281, 1783, t. 20133076

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A diversity of diversities: Do complex environmental effects underpin associations between below- and above-ground taxa?

Seaton, F., George, P., Alison, J., Jones, D. L., Creer, S., Smart, S. M., Emmett, B. A. & Robinson, D., 1 Gorff 2024, Yn: Journal of Ecology. 112, 7, t. 1550-1564 15 t.

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Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure

Nascimento, F. J. A., Dahl, M., Deyanova, D., Lyimo, L. D., Bik, H. M., Pereira, T. J., Bjork, M., Creer, S. & Gullstrom, M., 4 Hyd 2019, Yn: Communications Biology. 2, 362.

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Accounting for extinction dynamics unifies the geological and biological histories of Indo-Australian Archipelago

Herrera-Alsina, L., Lancaster, L. T., Algar, A. C., Bocedi, G., Papadopulos, A. S. T., Gubry-Rangin, C., Osborne, O. G., Mynard, P., Creer, S., Villegas-Patraca, R., Made Sudiana, I., Fahri, F., Lupiyaningdyah, P., Nangoy, M., Iskandar, D. T., Juliandi, B., Burslem, D. F. R. P. & Travis, J. M. J., 30 Medi 2024, Yn: Proceedings of the Royal Society B: Biological Sciences. 291, 2031, t. 20240966

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Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

Seymour, M., Durance, I., Cosby, B. J., Ransom-Jones, E., Deiner, K., Ormerod, S. J., Colbourne, J. K., Wilgar, G., Carvalho, G., De Bruyn, M., Edwards, F., Emmett, B. A., Bik, H. M. & Creer, S., 22 Ion 2018, Yn: Communications Biology. 1, 4.

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Airborne DNA reveals predictable spatial and seasonal dynamics of fungi

Abrego, N., Furneaux, B., Hardwick, B., Somervuo, P., Palorinne, I., Aguilar-Trigueros, C. A., Andrew, N. R., Babiy, U. V., Bao, T., Bazzano, G., Bondarchuk, S. N., Bonebrake, T. C., Brennan, G. L., Bret-Harte, S., Bässler, C., Cagnolo, L., Cameron, E. K., Chapurlat, E., Creer, S., D'Acqui, L. P., de Vere, N., Desprez-Loustau, M.-L., Dongmo, M. A. K., Jacobsen, I. B. D., Fisher, B. L., Flores de Jesus, M., Gilbert, G. S., Griffith, G. W., Gritsuk, A. A., Gross, A., Grudd, H., Halme, P., Hanna, R., Hansen, J., Hansen, L. H., Hegbe, A. D. M. T., Hill, S., Hogg, I. D., Hultman, J., Hyde, K. D., Hynson, N. A., Ivanova, N., Karisto, P., Kerdraon, D., Knorre, A., Krisai-Greilhuber, I., Kurhinen, J., Kuzmina, M., Lecomte, N., Lecomte, E., Loaiza, V., Lundin, E., Meire, A., Mešić, A., Miettinen, O., Monkhouse, N., Mortimer, P., Müller, J., Nilsson, R. H., Nonti, P. Y. C., Nordén, J., Nordén, B., Norros, V., Paz, C., Pellikka, P., Pereira, D., Petch, G., Pitkänen, J.-M., Popa, F., Potter, C., Purhonen, J., Pätsi, S., Rafiq, A., Raharinjanahary, D., Rakos, N., Rathnayaka, A. R., Raundrup, K., Rebriev, Y. A., Rikkinen, J., Rogers, H. M. K., Rogovsky, A., Rozhkov, Y., Runnel, K., Saarto, A., Savchenko, A., Schlegel, M., Schmidt, N. M., Seibold, S., Skjøth, C., Stengel, E., Sutyrina, S. V., Syvänperä, I., Tedersoo, L., Timm, J., Tipton, L., Toju, H., Uscka-Perzanowska, M., van der Bank, M., van der Bank, F. H., Vandenbrink, B., Ventura, S., Vignisson, S. R., Wang, X., Weisser, W. W., Wijesinghe, S. N., Wright, S. J., Yang, C., Yorou, N. S., Young, A., Yu, D. W., Zakharov, E. V., Hebert, P. D. N., Roslin, T. & Ovaskainen, O., 25 Gorff 2024, Yn: Nature. 631, 8022, t. 835-842 8 t.

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An evaluation of the systematic value of skull morphology in the Trimeresurus radiation (Serpentes: Viperidae: Crotalinae) of Asian pitvipers.

Guo, P., Malhotra, A., Creer, S. & Pook, C. E., 1 Tach 2009, Yn: Journal of Zoological Systematics and Evolutionary Research. 47, 4, t. 378-384

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An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding

Perry, W. B., Seymour, M., Orsini, L., Jâms, I. B., Milner, N., Edwards, F., Harvey, R., de Bruyn, M., Bista, I., Walsh, K., Emmett, B., Blackman, R., Altermatt, F., Lawson Handley, L., Mächler, E., Deiner, K., Bik, H. M., Carvalho, G., Colbourne, J., Cosby, B. J., Durance, I. & Creer, S., 23 Mai 2024, Yn: Nature Communications. 15, 1, t. 4372

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Ancient geological dynamics impact neutral biodiversity accumulation and are detectable in phylogenetic reconstructions

Herrera‐Alsina, L., Algar, A. C., Bocedi, G., Gubry‐Rangin, C., Lancaster, L., Mynard, P., Osborne, O., Papadopulos, A. S. T., Creer, S., Nangoy, M., Fahri, F., Lupiyaningdyah, P., Sudiana, I. M., Juliandi, B. & Travis, J. M. J., Awst 2021, Yn: Global Ecology and Biogeography. 30, 8, t. 1633-1642 10 t.

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Animals, protists and bacteria share marine biogeographic patterns

Holman, L. E., De Bruyn, M., Creer, S., Carvalho, G., Robidart, J. & Rius, M., 1 Meh 2021, Yn: Nature Ecology and Evolution. 5, 6, t. 738–746

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Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

Bista, I., Carvalho, G., Walsh, K., Seymour, M., Hajibabaei, M., Lallias, D., Christmas, M. & Creer, S., Ion 2017, Yn: Nature Communications. 8, 14087.

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Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus, Trimeresurus: Separate, simultaneous, and conditional data combination analyses

Creer, S., Malhotra, A. & Thorpe, R. S., 1 Awst 2003, Yn: Molecular Biology and Evolution. 20, 8, t. 1240-1251

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Bacillus indicus and Bacillus subtilis as alternative health and colouration promoters to synthetic astaxanthin in cyprinid aquaculture species.

Baumgärtner, S., Creer, S., Jones, C., James, J. & Ellison, A., 15 Ion 2024, Yn: Aquaculture. 578, 740016.

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Can Long-Range PCR Be Used to Amplify Genetically Divergent Mitochondrial Genomes for Comparative Phylogenetics? A Case Study within Spiders (Arthropoda: Araneae)

Briscoe, A. G., Goodacre, S., Masta, S. E., Taylor, M. I., Arnedo, M. A., Penney, D., Kenny, J. & Creer, S., 8 Mai 2013, Yn: PLoS ONE. 8, 5, t. e62404

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Challenges to Implementing Environmental-DNA Monitoring in Namibia

Perry, I., Jams, I. B., Casas-Mulet, R., Hamutoko, J., Marchbank, A., Lendelvo, S., Naomab, E., Mapani, B., Creer, S., Wanke, H., Durance, I. & Kille, P., 17 Ion 2022, Yn: Frontiers in Environmental Science. 9, 773991.

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Chapter Ten - Informing marine spatial planning decisions with environmental DNA

Bani, A., De Brauwer, M., Creer, S., Dumbrell, A. J., Limmon, G., Jompa, J., von der Heyden, S. & Berger, M., 2020, Yn: Advances in Ecological Research. 62, t. 375-407

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Choosing and using introns in molecular phylogenetics.

Creer, S., 1 Ion 2007, Yn: Evolutionary Bioinformatics. 3, t. 99-108

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Coexisting cryptic species of the Litoditis marina complex (Nematoda) show differential resource use and have distinct microbiomes with high intraspecific variability

Derycke, S., De Meester, N., Rigaux, A., Creer, S., Bik, H. M., Thomas, W. K. & Moens, T., Mai 2016, Yn: Molecular Ecology. 25, 9, t. 2093-2110

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Comments on the systematic status of specimens belonging to the genus Viridovipera (Serpentes: Viperidae: Crotalinae) from Sichuan and Yunnan provinces of southwestern China, with a redescription of V. yunnanensis.

Guo, P., Malhotra, A., Thorpe, R. S., Creer, S. & Pook, C. E., 1 Gorff 2009, Yn: Herpetological Journal. 19, 3, t. 151-162

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Comparative population genomics of manta rays has global implications for management

Humble, E., Hosegood, J., Carvalho, G., De Bruyn, M., Creer, S., Stevens, G. M. W., Armstrong, A., Bonfil, R., Deakos, M., Fernando, D., Froman, N., Peel, L. R., Pollett, S., Ponzo, A., Stewart, J. D., Wintner, S. & Ogden, R., 23 Tach 2023, (E-gyhoeddi cyn argraffu) Yn: Molecular Ecology.

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Competition and phylogeny determine community structure in Müllerian co-mimics

Alexandrou, M. A., Oliveira, C., Maillard, M., McGill, R. A., Newton, J., Creer, S. & Taylor, M. I., 1 Meh 2011, Yn: Nature. 469, t. 84-88

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Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Arribas, P., Andujar, C., Bidartondo, M. I., Bohmann, K., Coissac, E., Creer, S., deWaard, J. R., Elbrecht, V., Ficetola, G. F., Goberna, M., Kennedy, S., Krehenwinkel, H., Leese, F., Novotny, V., Ronquist, F., Yu, D. W., Zinger, L., Creedy, T. J., Meramveliotakis, E., Noguerales, V., Overcast, I., Morlon, H., Vogler, A. P., Papadopoulou, A. & Emerson, B. C., 1 Maw 2021, Yn: Molecular Ecology. 30, 5, t. 1120-1135 16 t.

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Convergence of multiple markers and analysis methods defines the genetic distinctiveness of cryptic pitvipers

Mrinalini, M., Thorpe, R. S., Creer, S., Lallias, D. S., Dawnay, L., Stuart, B. L. & Malhotra, A., 8 Gorff 2015, Yn: Molecular Phylogenetics and Evolution. 92, t. 266-279

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Cosmopolitanism of microbial eukaryotes in the global deep seas

Creer, S. & Sinniger, F., 1 Maw 2012, Yn: Molecular Ecology. 21, 5, t. 1033-1035

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Cryptic diets of forage fish: jellyfish consumption observed in the Celtic Sea and western English Channel

Lamb, P. D., Hunter, E., Pinnegar, J. K., van der Kooij, J., Creer, S. & Taylor, M. I., 26 Meh 2019, Yn: Journal of Fish Biology. 94, 6, t. 1026-1032 7 t.

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DNA Metabarcoding Methods for the Study of Marine Benthic Meiofauna

Gielings, R., Fais, M., Fontaneto, D., Creer, S., Costa, F. O., Renema, W. & Macher, J.-N., 30 Medi 2021, Yn: Frontiers in Marine Science.

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DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions

Zinger, L., Bonin, A., Alsos, I. G., Bálint, M., Bik, H., Boyer, F., Chariton, A. A., Creer, S., Coissac, E., Deagle, B. E., De Barba, M., Dickie, I. A., Dumbrell, A. J., Ficetola, G. F., Fierer, N., Fumagalli, L., Gilbert, M. T. P., Jarman, S., Jumpponen, A., Kauserud, H., Orlando, L., Pansu, J., Pawlowski, J., Tedersoo, L., Thomsen, P. F., Willerslev, E. & Taberlet, P., Ebr 2019, Yn: Molecular Ecology. 28, 8, t. 1857-1862 6 t.

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Decoupled richness of generalist anaerobes and sulphate-reducing bacteria is driven bypHacross land uses in temperate soils

George, P. B. L., Coelho, K. P., Creer, S., Lebron, I., Robinson, D. A. & Jones, D. L., Tach 2021, Yn: European Journal of Soil Science. 72, 6, t. 2445-2456 12 t.

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Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates

Vieira, P. E., Desiderato, A., Holdich, D. M., Soares, P., Creer, S., Carvalho, G., Costa, F. O. & Queiroga, H., 1 Ebr 2019, Yn: Molecular Ecology. 28, 7, t. 1784-1800

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Detecting macroecological patterns in bacterial communities across independent studies of global soils

Ramirez, K. S., Knight, C. G., Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, T. E. A., Creer, S., Crowther, T. W., Davison, J., Delgado-Baquerizo, M., Dorrepaal, E., Elliott, D. R., Fox, G., Griffiths, R., Hale, C., Hartman, K., Houlden, A., Jones, D., Krab, E. J., Maestre, F. T., McGuire, K. L., Monteux, S., Orr, C. H., van der Putten, W. H., Roberts, I. S., Robinson, D., Rocca, J., Rowntree, J., Schlaeppi, K., Shepherd, M., Singh, B. K., Straathof, A., Talbot, J. M., Thion, C., van der Heijden, M. & de Vries, F. T., 2018, Yn: Nature Microbiology. 3, t. 189-196 8 t.

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Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

Holman, L. E., de Bruyn, M., Creer, S., Carvalho, G., Robidart, J. & Rius, M., 9 Awst 2019, Yn: Scientific Reports. 9, 11559.

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Development and Application of Microsatellites in Carcinus maenas: Genetic Differentiation between Northern and Central Portuguese Populations

Pascoal, S., Creer, S., Taylor, M. I., Queiroga, H., Carvalho, G. & Mendo, S., 30 Medi 2009, Yn: PLoS ONE. 4, 9, t. e7268

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Disentangling the effects of sex, life history and genetic background in Atlantic salmon: growth, heart and liver under common garden conditions

Perry, W. B., Solberg, M. F., Brodie, C., Medina, A. C., Pillay, K. G., Egerton, A., Harvey, A., Creer, S., Llewellyn, M., Taylor, M., Carvalho, G. & Glover, K. A., 7 Hyd 2020, Yn: Royal Society Open Science. 7, 10, 200811.

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Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

George, P., Lallias, D., Creer, S., Seaton, F., Kenny, J. G., Eccles, R. M., Griffiths, R., Lebron, I., Emmett, B., Robinson, D. & Jones, D. L., 7 Maw 2019, Yn: Nature Communications. 10, 1, t. 1107 1107.

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Diversity and community composition of pico- and nanoplanktonic protists in the Vistula River estuary (Gulf of Gdańsk, Baltic Sea)

Piwosz, K., Calkiewicz, J., Golebiewski, M. & Creer, S., 31 Gorff 2018, Yn: Estuarine, Coastal and Shelf Science. 207, t. 242-249

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Does density influence relative growth performance of farmed, wild, and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions?

Harvey, A., Carvalho, G., Taylor, M., Solberg, M. F., Creer, S., Dyrhovden, L., Matre, I. H. & Glover, K. A., 6 Gorff 2016, Yn: Royal Society Open Science. 3, 7, 160152.

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Domestication-induced reduction in eye size revealed in multiple common garden experiments: The case of Atlantic salmon (Salmo salar L.)

Perry, W. B., Kaufmann, J., Solberg, M. F., Brodie, C., Medina, A. M. C., Pillay, K., Egerton, A., Harvey, A., Phillips, K. P., Coughlan, J., Egan, F., Grealis, R., Hutton, S., Leseur, F., Ryan, S., Poole, R., Rogan, G., Ryder, E., Schaal, P., Waters, C., Wynne, R., Taylor, M., Prodohl, P., Creer, S., Llewellyn, M., McGinnity, P., Carvalho, G. & Glover, K. A., 28 Medi 2021, Yn: Evolutionary Applications. 14, 9, t. 2319-2332 14 t.

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Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

Cordier, T., Alonso-Saez, L., Apothéloz-Perret-Gentil, Aylagas, E., Bohan, D. A., Bouchez, A., Chariton, A. A., Creer, S., Fruhe, L., Keck, F., Keeley, N., Laroche, O., Leese, F., Pochon, X., Stoeck, T., Pawlowski, J. & Lanzen, A., Gorff 2021, Yn: Molecular Ecology. 30, 13, t. 2937-2958 22 t.

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Environmental DNA biomonitoring in biodiversity hotspots: A case study of fishes of the Okavango Delta

von der Heyden, S., Neef, G., Grevesse, T., Cwecwe, Y., Sado, T., Miya, M., Mosie, I., Creer, S., Skelton, P. & von Brandis, R., 28 Tach 2023, Yn: Environmental DNA. 5, 6, t. 1720-1731

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Environmental DNA for Wildlife Biology and Biodiversity Monitoring

Evans, A. R., Bohmann, K., Evans, A., Gilbert, M. T., Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W. & De Bruyn, M., 10 Mai 2014, Yn: Trends in Ecology and Evolution. 29, 6, t. 358-367

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Environmental DNA metabarcoding: transforming how we survey animal and plant communities

Deiner, K., Bik, H. M., Machler, E., Seymour, M., Lacoursiere-Roussel, A., Altermatt, F., Creer, S., Bista, I. & Lodge, D. M., Tach 2017, Yn: Molecular Ecology Resources. 26, 21, t. 5872-5895

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Environmental DNA metabarcoding for fish diversity assessment in a macrotidal estuary: A comparison with established fish survey methods

Gibson, T., Carvalho, G., Ellison, A., Gargiulo, E., Hatton-Ellis, T., Handley, L. L., Mariani, S., Collins, R. A., Sellers, G., Distaso, M., Zampieri, C. & Creer, S., 1 Tach 2023, Yn: Estuarine, Coastal and Shelf Science. 294, 108522.

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Environmental DNA monitoring of oncogenic viral shedding and genomic profiling of sea turtle fibropapillomatosis reveals unusual viral dynamics

Farrell, J. A., Yetsko, K., Whitmore, L., Whilde, J., Eastman, C. B., Ramia, D. R., Thomas, R., Linser, P., Creer, S., Burkhalter, B., Schnitzler, C. & Duffy, D. J., 12 Mai 2021, Yn: Communications Biology. 4, 1, t. 565 1 t.

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Environmental DNA provides higher resolution assessment of riverine biodiversity and ecosystem function via spatio-temporal nestedness and turnover partitioning

Seymour, M., Edwards, F. K., Cosby, B. J., Bista, I., Scarlett, P. M., Brailsford, F., Glanville, H., de Bruyn, M., Carvalho, G. & Creer, S., 3 Mai 2021, Yn: Communications Biology. 4, 1, 512.

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Environmental DNA reveals ecologically relevant spatial and temporal variation in fish assemblages between estuaries and seasons

Gibson, T., Baillie, C., Collins, R. A., Wangensteen, O. S., Corrigan, L., Ellison, A., Heddell-Cowie, M., Westoby, H., Byatt, B., Lawson-Handley, L., Soto, A. Z., Creer, S., Genner, M. J. & Mariani, S., 1 Awst 2024, Yn: Ecological Indicators. 165, 112215.

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Environmental DNA reveals links between abundance and composition of airborne grass pollen and respiratory health

Rowney, F. M., Brennan, G. L., Skjoth, C. A., Griffith, G. W., McInnes, R. N., Clewlow, Y., Adams-Groom, B., Barber, A., De Vere, N., Economou, T., Hegarty, M., Hanlon, H. M., Jones, L., Kurganskiy, A., Petch, G. M., Potter, C., Munawar Rafiq, A., Warner, A., The PollerGEN Consortium, Wheeler, B. W., Osborne, N. J. & Creer, S., 10 Mai 2021, Yn: Current Biology. 31, 9, t. 1995-2003 9 t.

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Environmental DNA size sorting and degradation experiment indicates the state of Daphnia magna mitochondrial and nuclear eDNA is subcellular

Moushomi, R., Wilgar, G., Carvalho, G., Creer, S. & Seymour, M., 29 Awst 2019, Yn: Scientific Reports. 9, 12500 (2019.

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