Novel metagenomic biocatalyst collections for industrial biotechnology MetaCat

  1. Erthygl › Ymchwil › Adolygwyd gan gymheiriaid
  2. Cyhoeddwyd

    Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families

    Popovic, A., Hai, T., Tchigvintsev, A., Hajighasemi, M., Nocek, B., Khusnutdinova, A. N., Brown, G., Glinos, J., Flick, R., Skarina, T., Chernikova, T., Yim, V., Bruls, T., Le Paslier, D., Yakimov, M. M., Joachimiak, A., Ferrer, M., Golyshina, O., Savchenko, A., Golyshin, P. & Yakunin, A. F., Maw 2017, Yn: Scientific Reports. 7, 44103, 44103.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  3. Cyhoeddwyd

    Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity

    Korzhenkov, A. A., Toshchakov, S. V., Bargiela, R., Gibbard, H., Ferrer, M., Teplyuk, A. V., Jones, D. L., Kublanov, I. V., Golyshin, P. & Golyshina, O., 28 Ion 2019, Yn: Microbiome. 7, 1, 11.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  4. Cyhoeddwyd

    Biodiversity for biocatalysis: A review of the α/β-hydrolase fold superfamily of esterases-lipases discovered in metagenomes

    Ferrer, M., Bargiela, R., Martínez-Martínez, M., Mir, J., Koch, R., Golyshina, O. & Golyshin, P., 1 Maw 2016, Yn: Biocatalysis and Biotransformation . 33, 5-6, t. 235-249

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  5. Cyhoeddwyd

    Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

    Golyshina, O., Kublanov, I. V., Hai, T., Korzhenkov, A. A., Lunsdorf, H., Nechitaylo, T. Y., Toshchakov, S. V. & Golyshin, P., Rhag 2016, Yn: Scientific Reports. 6, 39034.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  6. Cyhoeddwyd

    Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

    Coscolín, C., Katzke, N., Garcia-Moyano, A., Navarro-Fernández, J., Almendral, D., Martinez-Martinez, M., Bollinger, A., Bargiela, R., Gerler, C., Chernikova, T. N., Rojo, D., Barbas, C., Tran, H., Golyshina, O. V., Koch, R., Yakimov, M. M., Bjerga, G. E. K., Golyshin, P. N., Jaeger, K-E. & Ferrer, M., 9 Ion 2019, Yn: Applied and Environmental Microbiology. 85, 2, e02404-18.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  7. Cyhoeddwyd

    Combined whole-cell high-throughput functional screening for identification of new nicotinamidases/pyrazinamidases in metagenomic/polygenomic libraries

    Zapata-Perez, R., Garcia-Saura, A. G., Jebbar, M., Golyshin, P. & Sanchez-Ferrer, A., Tach 2016, Yn: Frontiers in Microbiology. 7, 1915.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  8. Cyhoeddwyd

    Cuniculiplasmataceae, their ecogenomic and metabolic patterns and interactions with ‘ARMAN’

    Golyshina, O. V., Bargiela, R. & Golyshin, P. N., Ion 2019, Yn: Extremophiles. 23, 1, t. 1-7 7 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  9. Cyhoeddwyd

    Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data

    Bargiela, R., Gertler, C., Mapelli, F., Magagnini, M., Chen, J., Daffonchio, D., Golyshin, P. & Ferrer, M., 24 Tach 2015, Yn: Frontiers in Microbiology. 6

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  10. Cyhoeddwyd

    Determinants and prediction of esterase substrate promiscuity patterns

    Martínez-Martínez, M., Coscolín, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernández, J., Bollinger, A., Thies, S., Méndez-García, C., Popovic, A., Brown, G., Chernikova, T., García-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., del Pozo, M. V., Stokke, R., Steen, I. H., Cui, H., Xu, X., Nocek, B., Alcaide, M., Disasto, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernández-Guerra, A., Glockner, F. O., Golyshina, O., Yakimov, M. M., Savchenko, A., Jaeger, K-E., Yakunin, A. F., Streit, W. R., Golyshin, P., Guallar, V. & Ferrer, M., 2018, Yn: ACS Chemical Biology. 13, 1, t. 225-234

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  11. Cyhoeddwyd

    Diversity of “Ca. Micrarchaeota” in two distinct types of acidic environments and their associations with Thermoplasmatales

    Golyshina, O., Bargiela, R., Toshchakov, S. V., Chernyh, N. A., Ramayah, S., Korzhenkov, A. A., Kublanov, I. V. & Golyshin, P., 15 Meh 2019, Yn: Genes. 10, 6, 461.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  12. Cyhoeddwyd

    Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends

    Ferrer, M., Martinez, M., Bargiela, R., Streit, W. R., Golyshina, O. & Golyshin, P., 1 Ion 2016, Yn: Microbial Biotechnology. 9, 1, t. 22-34

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  13. Cyhoeddwyd

    Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

    Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Maw 2020, Yn: Nature Catalysis. 3, 3, t. 319-328

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  14. Cyhoeddwyd

    Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT

    Golyshina, O., Hai, T., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., LaCono, V., Smedile, F., Slesarev, A., Rojo, D., Barbas, C., Ferrer, M., Yakimov, M. M. & Golyshin, P., 16 Meh 2017, Yn: Scientific Reports. 7, 3682.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  15. Cyhoeddwyd

    Microbial Communities of Polymetallic Deposits’ Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts

    Gavrilov, S. N., Korzhenkov, A. A., Kublanov, I. V., Bargiela, R., Zamana, L. V., Toshchakov, S. V., Golyshin, P. & Golyshina, O., 17 Gorff 2019, Yn: Frontiers in Microbiology.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  16. Cyhoeddwyd

    Proteogenomic Analysis of Epibacterium Mobile BBCC367, a Relevant Marine Bacterium Isolated From the South Pacific Ocean

    Matallana-Surget, S., Werner, J., Wattiez, R., Lebaron, K., Intertaglia, L., Regan, C., Morris, J., Teeling, H., Ferrer, M., Golyshin, P., Gerogiorgis, D., Reilly, S. I. & Lebaron, P., Rhag 2018, Yn: Frontiers in Microbiology. 9, 3125.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  17. Cyhoeddwyd

    Rational Engineering of Multiple Active Sites in an Ester Hydrolase

    Santiago, G., Martinez-Martinez, M., Alonso, S., Bargiela, R., Coscolín, C., Golyshin, P., Guallar, V. & Ferrer, M., Maw 2018, Yn: Biochemistry. 57, 15, t. 2245-2255

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  18. Cyhoeddwyd

    Relationships between Substrate Promiscuity and Chiral Selectivity of Esterases from Phylogenetically and Environmentally Diverse Microorganisms

    Coscolín, C., Martínez-Martínez, M., Chow, J., Bargiela, R., García-Moyano, A., Bjerga, G. E. K., Bollinger, A., Stokke, R., Steen, I. H., Golyshina, O., Yakimov, M. M., Jaeger, K-E., Yakunin, A. F., Streit, W. R., Golyshin, P. & Ferrer, M., 5 Ion 2018, Yn: Catalysts. 8, 1, 10.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  19. Cyhoeddwyd

    Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters

    Hajighasemi, M., Tchigvintsev, A., Nocek, B., Flick, R., Popovic, A., Hai, T., Khusnutdinova, A. N., Brown, G., Xu, X., Cui, H., Anstett, J., Chernikova, T., Bruls, T., Le Paslier, D., Yakimov, M. M., Joachimiak, A., Golyshina, O., Savchenko, A., Golyshin, P., Edwards, E. A. & Yakunin, A. F., 6 Tach 2018, Yn: Environmental Science and Technology. 52, 21, t. 12388-12401

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  20. Cyhoeddwyd

    Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase

    Cea-Rama, I., Coscolín, C., Katsonis, P., Bargiela, R., Golyshin, P., Lichtarge, O., Ferrer, M. & Sanz-Aparicio, J., 2021, Yn: Computational and Structural Biotechnology Journal. 19, t. 2307-2317 11 t.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  21. Cyhoeddwyd

    Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems

    Potter, C., Freeman, C., Golyshin, P., Ackerman, G., Fenner, N., McDonald, J., Ehbair, A., Jones, T., Murphy, L. & Creer, S., Medi 2017, Yn: Scientific Reports. 7, 11314.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  22. Cyhoeddwyd

    Sulfur Respiration in a Group of Facultatively Anaerobic Natronoarchaea Ubiquitous in Hypersaline Soda Lakes

    Sorokin, D. Y., Messina, E., La Cono, V., Ferrero, M., Ciordia, S., Mena, M. C., Toshchakov, S. V., Golyshin, P. N. & Yakimoy, M. M., Hyd 2018, Yn: Frontiers in Microbiology. 9, 2359.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  23. Cyhoeddwyd

    The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle

    Toshchakov, S. V., Korzhenkov, A. A., Chernikova, T., Ferrer, M., Golyshina, O., Yakimov, M. M. & Golyshin, P., Rhag 2017, Yn: Marine Genomics. 36, t. 41-47

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  24. Cyhoeddwyd

    The novel extremely acidophilic, cell-wall-deficient archaeon Cuniculiplasma divulgatum gen. nov., sp. nov. represents a new family, Cuniculiplasmataceae fam. nov., of the order Thermoplasmatales

    Golyshina, O., Lünsdorf, H., Kublanov, I. V., Goldenstein, N. I., Hinrichs, K-U. & Golyshin, P., Ion 2016, Yn: International Journal of Systematic and Evolutionary Microbiology. 66, 1, t. 332-340

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  25. Cyhoeddwyd

    The rumen microbiome: an underexplored resource for novel antimicrobial discovery

    Oyama, L. B., Girdwood, S. E., Cookson, A. R., Fernanadez-Fuentes, N., Prive, F., Vallin, H. E., Wilkinson, T. J., Golyshin, P., Golyshina, O., Mikut, R., Hilpert, K., Richards, J., Wootton, M., Edwards, J. E., Maresca, M., Perrier, J., Lundy, F. T., Luo, Y., Zhou, M., Hess, M., Mantovani, H. C., Creevey, C. J. & Huws, S. A., 1 Rhag 2017, Yn: NPJ Biofilms and Microbiomes. 3, 33 .

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid

  26. Cyhoeddwyd

    “ARMAN” archaea depend on association with euryarchaeal host in culture and in situ

    Golyshina, O., Toshchakov, S. V., Makarova, K. S., Gavrilov, S. N., Korzhenkov, A. A., La Cono, V., Arcadi, E., Nechitaylo, T. Y., Ferrer, M., Kublanov, I. V., Wolf, Y. I., Yakimov, M. M. & Golyshin, P., 2017, Yn: Nature Communications. 8, 60.

    Allbwn ymchwil: Cyfraniad at gyfnodolynErthygladolygiad gan gymheiriaid