Research Portal

School of Environmental & Natural Sciences

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  1. Published

    Genus II. Leptospirillum

    Johnson, D. B., Boone, D. R. (ed.) & Castenholtz, R. W. (ed.), 1 Jan 2001, Bergey's Manual of Systematic Bacteriology: Archaea and the Deeply Branching and Phototrophic Bacteria v. 1. 2001 ed. Springer, p. 453-457

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  2. Published

    Removal of soluble manganese from mine waters using a fixed bed column bioreactor.

    Johnson, D. B., Miller, H., Ukermann, S., Hallberg, K. B., Tsezos, M. (ed.), Hatzikioseyian, A. (ed.) & Remoudaki, E. (ed.), 1 Jan 2004, p. 1163-1170.

    Research output: Contribution to conference › Paper

  3. Published

    Development and application of bioprocessing technologies in the metal mining industry

    Johnson, D. B., 1 Aug 2012.

    Research output: Contribution to conference › Paper

  4. Published

    A New Direction for Biomining: Extraction of Metals by Reductive Dissolution of Oxidized Ores

    Johnson, D. B., Grail, B. M. & Hallberg, K. B., 30 Jan 2013, In: Minerals. 3, 1, p. 49-58

    Research output: Contribution to journal › Article › peer-review

  5. Published

    Reductive dissolution of minerals and selective recovery of metals using acidophilic iron- and sulfate-reducing acidophiles

    Johnson, D. B., 1 Oct 2012, In: Hydrometallurgy. 127-128, p. 172-177

    Research output: Contribution to journal › Article › peer-review

  6. Published

    Isolation and characterization of Acidicaldus organivorus, gen. nov., sp nov.: a novel sulfur-oxidizing, ferric iron-reducing thermo-acidophilic heterotrophic Proteobacterium.

    Johnson, D. B., Stallwood, B., Kimura, S. & Hallberg, K. B., 1 Apr 2006, In: Archives of Microbiology. 185, 3, p. 212-221

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Novel biosulfidogenic system for the selective recovery of metals from acidic leach liquors and waste streams

    Johnson, D. B., Sen, A. M., Kimura, S., Rowe, O. F. & Hallberg, K. B., 1 Mar 2006, In: Mineral Processing and Extractive Metallurgy. 115, 1, p. 19-24

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Microbial communities and interactions in low pH environments

    Johnson, D. B., 2016, Acidophiles: Life in Extremely Acidic Environments. Quatrini, R. & Johnson, D. B. (eds.). Caister Academic Press Limited, p. 121-138

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  9. Published

    Development of an integrated microbiological approach for remediation of acid mine drainage and recovery of heavy metals.

    Johnson, D. B., Rowe, O., Kimura, S., Hallberg, K. B., Jarvis, A. P. (ed.), Dudgeon, B. A. (ed.) & Younger, P. L. (ed.), 1 Jan 2004, p. 151-157.

    Research output: Contribution to conference › Paper

  10. Published

    The microbiology of acid mine drainage: genesis and biotreatment.

    Johnson, D. B., Dziurla, M. A., Kolmert, A. & Hallberg, K. B., 1 May 2002, In: South African Journal of Science. 98, 5-6, p. 249-255

    Research output: Contribution to journal › Article › peer-review

  11. Published

    Sulfobacillus benefaciens sp nov., an acidophilic facultative anaerobic Firmicute isolated from mineral bioleaching operations.

    Johnson, D. B., Joulian, C., d'Hughes, P. & Hallberg, K. B., 1 Nov 2008, In: Extremophiles. 12, 6, p. 789-798

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Deconstructing and reconstructing microbial communities that promote the natural attenuation of acidic mine waters

    Johnson, B., 2 Apr 2017, In: Abstracts of papers - American Chemical Society. 253

    Research output: Contribution to journal › Meeting Abstract › peer-review

  13. Published

    Dissimilatory reduction of sulfate in extremely acidic environments is carried out by novel sulfidogenic bacteria in syntrophic consortia.

    Johnson, D. B., Rowe, O. F., Hallberg, K. B., Querellou, J. (ed.) & Lamy, C. (ed.), 1 Jan 2006, p. 36.

    Research output: Contribution to conference › Paper

  14. Published

    Biomining goes underground

    Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Ferrimicrobium acidiphilum gen. nov., sp nov and Ferrithrix thermotolerans gen. nov., sp nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria.

    Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Thomas, A. & Hallberg, K. B., 1 May 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 1082-1089

    Research output: Contribution to journal › Article › peer-review

  16. Published

    Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.

    Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93

    Research output: Contribution to journal › Article › peer-review

  17. Published

    "Bioshrouding": a novel approach for securing reactive mineral tailings

    Johnson, D. B., Yajie, L. & Okibe, N., Mar 2008, In: Biotechnology Letters. 30, 3, p. 445-9 5 p.

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Editorial: Recent Advances in Acidophile Microbiology: Fundamentals and Applications

    Johnson, D. B. & Schippers, A., 14 Mar 2017, In: Frontiers in Microbiology. 8, p. 428

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite

    Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.

    Research output: Contribution to journal › Article › peer-review

  20. Published

    Biodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, as revealed by a combination of cultivation-based and cultivation-independent techniques.

    Johnson, D. B., Kimura, S., Hallberg, K. B., Querellou, J. (ed.) & Lamy, C. (ed.), 1 Jan 2006, p. 139.

    Research output: Contribution to conference › Paper

  21. Published

    Biomining in reverse gear: using bacteria to extract metals from oxidized ores

    Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5

    Research output: Contribution to journal › Article › peer-review

  22. Published
  23. Published

    Concentrate mineralogy dictates the composition of bioleaching mineral consortia

    Johnson, D. B., Yajie, L., Okibe, N., Coupland, K. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 403-404

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Physiology and ecology of acidophilic microorganisms.

    Johnson, D. B., Gerday, C. (ed.) & Glansdorff, N. (ed.), 1 Jan 2007, Physiology and Biochemistry of Extremophiles. 2007 ed. American Society for Microbiology, p. 257-270

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  25. Published

    Biodiversity of acidophilic moderate thermophiles isolated from two sites in Yellowstone National Park, and their roles in the dissimilatory oxido-reduction of iron.

    Johnson, D. B., Body, D. A., Bridge, T. A., Bruhn, D. F., Roberto, F. F., Reysenbach, A. L. (ed.), Voytek, M. (ed.) & Mancinelli, R. (ed.), 1 Jan 2001, Thermophiles: Biodiversity: Ecology and Evolution. 2001 ed. Kluwer Academic/Plenum Publishers, p. 23-39

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  26. Published

    Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis

    Johnson, D. B., Okibe, N. & Hallberg, K. B., 1 Mar 2005, In: Journal of Microbiological Methods. 60, 3, p. 299-313

    Research output: Contribution to journal › Article › peer-review

  27. Published

    Role of pure and mixed cultures of gram-positive eubacteria in mineral leaching.

    Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Yahya, A., Hallberg, K. B., Ciminelli, V. S. (ed.) & Garcia Jr, O. (ed.), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 461-470

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  28. Published

    Sulfidogenesis at low pH: a novel approach for bioremediating acid rock drainage and recovering soluble metals.

    Johnson, D. B., Rowe, O. F., Kimura, S. & Hallberg, K. B., 1 Jan 2005.

    Research output: Contribution to conference › Paper

  29. Published

    Developing Sustainable Biotechnologies for Mine Water Treatment in the 21st Century

    Johnson, B., Santos, A. L., Falagan, C., Jones, R. M., Grail, B. M., Holanda, R. & Hedrich, S., Jul 2016, Procddings IMWA 2016. p. 782-789

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  30. Published
  31. Published

    Dissolved Organic Matter in Freshwater Ecosystems: Nature, Origins and Ecological Significance

    Johnes, P. (ed.), Evershed, R. P. (ed.), Jones, D. L. (ed.) & Maberly, S. C. (ed.), 2023, Springer.

    Research output: Book/Report › Book › peer-review

  32. Published

    The roles of allopatric divergence and natural selection in quantitative trait variation across a secondary contact zone in the lizard Anolis roquet.

    Johansson, H., Surget-Groba, Y. & Thorpe, R. S., 1 Dec 2008, In: Molecular Ecology. 17, 23, p. 5146-5156

    Research output: Contribution to journal › Article › peer-review

  33. Published

    Development of microsatellite markers in the St Lucia anole, Anolis luciae.

    Johansson, H., Surget-Groba, Y., Gow, J. L. & Thorpe, R. S., 1 Nov 2008, In: Molecular Ecology Resources. 8, 6, p. 1408-1410

    Research output: Contribution to journal › Article › peer-review

  34. Published

    Microsatellite data show evidence for male-biased dispersal in the Caribbean lizard Anolis roquet.

    Johansson, H., Surget-Groba, Y. & Thorpe, R. S., 1 Oct 2008, In: Molecular Ecology. 17, 20, p. 4425-4432

    Research output: Contribution to journal › Article › peer-review

  35. E-pub ahead of print

    Protecting stable biological nomenclatural systems enables universal communication: A collective international appeal

    1558 additional coauthors, 19 Jun 2024, (E-pub ahead of print) In: BioScience. p. 1 6 p.

    Research output: Contribution to journal › Article › peer-review

  36. Published

    Mismatch between molecular (mtDNA) and morphological classification of Macrobrachium prawns from Southern Nigeria: Cryptic freshwater species and brackish water morphotypes

    Jimoh, A. A., Anetekhai, M. A., Cummings, S., Abanikanda, O. T., Turner, G. F., van Oosterhout, C. & Hanfling, B., 1 Oct 2013, In: Aquaculture. 410-411, p. 25-31

    Research output: Contribution to journal › Article › peer-review

  37. Published

    Mixing and matching: using qualitative methods to improve quantitative impact evaluations (IEs) and systematic reviews (SRs) of development outcomes

    Jimenez, E., Waddington, H., Goel, N., Prost, A., Pullin, A., White, H., Lahiri, S. & Narain, A., 30 Nov 2018, In: Journal of Development Effectiveness. 10, 4, p. 400-421

    Research output: Contribution to journal › Article › peer-review

  38. Published

    Effects of warming and grazing on dissolved organic nitrogen in a Tibetan alpine meadow ecosystem

    Jiang, L., Wang, S., Luo, C., Zhu, X., Kardol, P., Zhang, Z., Li, Y., Wang, C., Wang, Y. & Jones, D., 1 May 2016, In: Soil & Tillage Research. 158, May, p. 156-164

    Research output: Contribution to journal › Article › peer-review

  39. Published

    Abiotic and biotic controls of soil dissolved organic nitrogen along a precipitation gradient on the Tibetan plateau

    Jiang, L., Wang, S., Pang, Z., Wang, C., Meng, F., Lan, Z., Zhou, X., Li, Y., Zhang, Z., Luo, C., Jones, D. L., Rui, Y. & Wang, Y., Feb 2021, In: Plant and Soil. 459, 1-2, p. 65-78

    Research output: Contribution to journal › Article › peer-review

  40. Published

    Effects of grazing on the acquisition of nitrogen by plants and microorganisms in an alpine grassland on the Tibetan plateau

    Jiang, L., Wang, S., Zhe, P., Wang, C., Kardol, P., Zhong, L., Yu, Q., Lan, Z., Wang, Y., Xu, X., Kuzyakov, Y., Luo, C., Zhang, Z. & Jones, D. L., 9 Mar 2017, In: Plant and Soil. 416, 1-2, p. 297-308

    Research output: Contribution to journal › Article › peer-review

  41. Published

    A Modified KNN Method for Mapping the Leaf Area Index in Arid and Semi-Arid Areas of China

    Jiang, F., Smith, A., Kutia, M., Wang, G., Liu, H. & Sun, H., 10 Jun 2020, In: Remote Sensing. 12, 11, 24 p., 1884.

    Research output: Contribution to journal › Article › peer-review

  42. Published

    Plant organic N uptake maintains species dominance under long-term warming

    Jiang, L., Wang, S., Zhe, P., Xu, X., Kardol, P., Li, Y., Zhang, L., Wang, Y., Lei, Z., Lan, Z., Hill, P. W., Zhang, Z., Luo, C., Rui, Y., Ning, D. & Jones, D. L., 25 Oct 2018, In: Plant and Soil. 433, 1-2, p. 243-255

    Research output: Contribution to journal › Article › peer-review

  43. Published

    Integrating soil testing phosphorus into environmentally based manure management in pen-urban regions: A case study in the Beijing area

    Jia, W., Yan, Z. J., Chadwick, D. R., Kang, L. Y., Duan, Z. Q., Bai, Z. H. & Chen, Q., 2 May 2015, In: Agriculture, Ecosystems and Environment. 209, p. 47-59

    Research output: Contribution to journal › Article › peer-review

  44. Published

    Insights into the associations between soil quality and ecosystem multifunctionality driven by fertilization management: A case study from the North China Plain

    Jia, R., Zhou, J., Chu, J., Shahbaz, M., Yang, Y., Jones, D. L., Zang, H., Razavi, B. S. & Zeng, Z., 15 Aug 2022, In: Journal of Cleaner Production. 362

    Research output: Contribution to journal › Article › peer-review

  45. Published

    Mobilization of aluminium, iron and silicon by Picea abies and ectomycorrhizas in a forest soil.

    Jentschke, G. W., Van Hees, P. A., Jones, D. L., Jentschke, G. & Godbold, D. L., 1 Mar 2004, In: European Journal of Soil Science. 55, 1, p. 101-111

    Research output: Contribution to journal › Article › peer-review

  46. Published

    Nitrogen limitation in mycorrhizal Norway spruce (Picea abies) seedlings induced mycelial foraging for ammonium: implications for Ca and Mg uptake.

    Jentschke, G. W., Jentschke, G., Godbold, D. L. & Brandes, B., 1 Jul 2001, In: Plant and Soil. 234, 1, p. 109-117

    Research output: Contribution to journal › Article › peer-review

  47. Published

    Organic acid concentrations in soil solution: effects of young coniferous trees and ectomycorrhizal fungi.

    Jentschke, G. W., Van Hees, P. A., Jones, D. L., Jentschke, G. & Godbold, D. L., 1 Apr 2005, In: Soil Biology and Biochemistry. 37, 4, p. 771-776

    Research output: Contribution to journal › Article › peer-review

  48. Published

    Contrasting rooting patterns of some arid-zone fruit tree species from Botswana. I. Fine root distribution.

    Jentschke, G. W., Oppelt, A. L., Kurth, W., Jentschke, G. & Godbold, D. L., 1 Jan 2005, In: Agroforestry Systems. 64, 1, p. 1-11

    Research output: Contribution to journal › Article › peer-review

  49. Published

    Does soil acidity reduce subsoil rooting in Norway spruce (Picea abies)?

    Jentschke, G. W., Jentschke, G., Drexhage, M., Fritz, H. W., Fritz, E., Schella, B., Lee, D. H., Gruber, F., Heimann, J., Kuhr, M., Schmidt, J., Schmidt, S., Zimmermann, R. & Godbold, D. L., 1 Nov 2001, In: Plant and Soil. 237, 1, p. 91-108

    Research output: Contribution to journal › Article › peer-review

  50. Published

    Contribution of root turnover to nutrient cycling in beech forest.

    Jentschke, G. W., Wu, K. H., Jentschke, G., Godbold, D. L., Horst, W. W. (ed.), Sattelmacher, B. (ed.), Schmidhalter, U. (ed.), Schubert, S. (ed.), Von Wiren, N. (ed.), Wittenmayer, L. (ed.), Schenk, M. K. (ed.), Burkert, A. (ed.), Claassen, N. (ed.) & Flessa, H. (ed.), 1 Jan 2001, Plant nutrition - food security and sustainability of agro-ecosystems through applied and basic research.. 2001 ed. Kluwer Academic Publishers, p. 916-917

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

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