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Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

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Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. / Helyar, Sarah; Hemmer-Hansen, J.; Bekkevold, Dorte et al.
In: Molecular Ecology Resources, Vol. 11, No. S1, 03.2011, p. 123-136.

Research output: Contribution to journal › Article › peer-review

HarvardHarvard

Helyar, S, Hemmer-Hansen, J, Bekkevold, D, Taylor, MI, Ogden, R, Limborg, MT, Cariani, A, Maes, GE, Diopere, E, Carvalho, G & Nielsen, A 2011, 'Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges', Molecular Ecology Resources, vol. 11, no. S1, pp. 123-136. https://doi.org/10.1111/j.1755-0998.2010.02943.x

APA

Helyar, S., Hemmer-Hansen, J., Bekkevold, D., Taylor, M. I., Ogden, R., Limborg, M. T., Cariani, A., Maes, G. E., Diopere, E., Carvalho, G., & Nielsen, A. (2011). Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources, 11(S1), 123-136. https://doi.org/10.1111/j.1755-0998.2010.02943.x

CBE

Helyar S, Hemmer-Hansen J, Bekkevold D, Taylor MI, Ogden R, Limborg MT, Cariani A, Maes GE, Diopere E, Carvalho G, et al. 2011. Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources. 11(S1):123-136. https://doi.org/10.1111/j.1755-0998.2010.02943.x

MLA

Helyar, Sarah et al. "Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges". Molecular Ecology Resources. 2011, 11(S1). 123-136. https://doi.org/10.1111/j.1755-0998.2010.02943.x

VancouverVancouver

Helyar S, Hemmer-Hansen J, Bekkevold D, Taylor MI, Ogden R, Limborg MT et al. Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources. 2011 Mar;11(S1):123-136. doi: https://doi.org/10.1111/j.1755-0998.2010.02943.x

Author

Helyar, Sarah ; Hemmer-Hansen, J. ; Bekkevold, Dorte et al. / Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. In: Molecular Ecology Resources. 2011 ; Vol. 11, No. S1. pp. 123-136.

RIS

TY - JOUR

T1 - Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

AU - Helyar, Sarah

AU - Hemmer-Hansen, J.

AU - Bekkevold, Dorte

AU - Taylor, Martin I.

AU - Ogden, Rob

AU - Limborg, Morten T

AU - Cariani, Alessia

AU - Maes, Gregory E.

AU - Diopere, Eveine

AU - Carvalho, Gary

AU - Nielsen, Anders

PY - 2011/3

Y1 - 2011/3

N2 - Recent improvements in the speed, cost and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs). SNPs are increasingly being used as an addition to the molecular ecology toolkit in nonmodel organisms, but their efficient use remains challenging. Here, we discuss common issues when employing SNP markers, including the high numbers of markers typically employed, the effects of ascertainment bias and the inclusion of nonneutral loci in a marker panel. We provide a critique of considerations specifically associated with the application and population genetic analysis of SNPs in nonmodel taxa, focusing specifically on some of the most commonly applied methods

AB - Recent improvements in the speed, cost and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs). SNPs are increasingly being used as an addition to the molecular ecology toolkit in nonmodel organisms, but their efficient use remains challenging. Here, we discuss common issues when employing SNP markers, including the high numbers of markers typically employed, the effects of ascertainment bias and the inclusion of nonneutral loci in a marker panel. We provide a critique of considerations specifically associated with the application and population genetic analysis of SNPs in nonmodel taxa, focusing specifically on some of the most commonly applied methods

KW - ascertainment bias

KW - nonneutral loci

KW - outlier detection

KW - population genomics

KW - population structure

KW - software

U2 - https://doi.org/10.1111/j.1755-0998.2010.02943.x

DO - https://doi.org/10.1111/j.1755-0998.2010.02943.x

M3 - Article

VL - 11

SP - 123

EP - 136

JO - Molecular Ecology Resources

JF - Molecular Ecology Resources

SN - 1755-098X

IS - S1

ER -