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College of Science & Engineering

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  1. Published

    Microbial potential for denitrification in the hyperarid Atacama Desert soils

    Wu, D., Senbayram, M., Moradi, G., Moerchen, R., Knief, C., Klumpp, E., Jones, D. L., Well, R., Chen, R. & Bol, R., 1 Jun 2021, In: Soil Biology and Biochemistry. 157, 108248.

    Research output: Contribution to journal › Article › peer-review

  2. Published

    Microbial populations of tailings spoil at the São Domingos former copper mine.

    Bryan, C. G., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 677-686.

    Research output: Contribution to conference › Paper

  3. Published

    Microbial populations of mineral spoils and their potential role in biomining.

    Bryan, C. B., Johnson, D. B. & Hallberg, K. B., 1 Jan 2005.

    Research output: Contribution to conference › Paper

  4. Published

    Microbial populations of compost wetlands constructed to remediate acidic coal spoil drainage.

    Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 713-722.

    Research output: Contribution to conference › Paper

  5. Published

    Microbial populations in surface spoil at the abandoned Mynydd Parys copper mines.

    Bryan, C. G., Hallberg, K. B., Johnson, D. B., Jarvis, A. P. (Editor), Dudgeon, B. A. (Editor) & Younger, P. L. (Editor), 1 Jan 2004, p. 107-112.

    Research output: Contribution to conference › Paper

  6. Published

    Microbial metagenomes: moving forward industrial biotechnology.

    Ferrer, M., Beloqui, A. & Golyshin, P. N., 1 May 2007, In: Journal of Chemical Technology and Biotechnology. 82, 5, p. 421-423

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation

    Yakimov, M. M., La Cono, V., Slepak, V. Z., La Spada, G., Arcadi, E., Messina, E., Borghini, M., Monticelli, L. S., Rojo, D., Barbas, C., Golyshina, O. V., Ferrer, M., Golyshin, P. N. & Giuliano, L., 19 Dec 2013, In: Scientific Reports. 3, p. 3554

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Microbial generation of sulfuric acid from granular elemental sulfur in laboratory-scale bioreactors

    Pakostova, E. & Johnson, D. B., Dec 2019, In: Hydrometallurgy. 190, 105152.

    Research output: Contribution to journal › Article › peer-review

  9. Published

    Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin.

    Ferrer, M., Golyshina, O. V., Chernikova, T. N., Khachane, A. N., Dos Santos, V. A., Yakimov, M. M., Timmis, K. N. & Golyshin, P. N., 1 Aug 2005, In: Chemistry and Biology. 12, 8, p. 895-904

    Research output: Contribution to journal › Article › peer-review

  10. Published

    Microbial enzyme activity and stoichiometry signal the effects of agricultural intervention on nutrient cycling in peatlands

    Qin, L., Freeman, C., Jia, X., Zhang, Z., Liu, B., Zhang, S. & Jiang, M., 1 Mar 2021, In: Ecological Indicators. 122, 107242.

    Research output: Contribution to journal › Article › peer-review

  11. Published

    Microbial ecology and biogeochemical cycling of metals in experimental wetland mesocosms.

    Coupland, K., Hallberg, K. B. & Johnson, D. B., 1 Jan 2005.

    Research output: Contribution to conference › Paper

  12. Published

    Microbial diversity dynamics during the self-acidification of dairy slurry

    Bastami, M. S., Jones, D. L. & Chadwick, D. R., 16 Jul 2021, In: Environmental Technology. 42, 16, p. 2562-2572 11 p.

    Research output: Contribution to journal › Article › peer-review

  13. Published

    Microbial diversity and metabolic networks in acid mine drainage habitats

    Mendez-Garcia, C., Pelaez, A. I., Mesa, V., Sanchez, J., Golyshina, O. & Ferrer, M., 29 May 2015, In: Frontiers in Microbiology. 6, p. Article Number 475

    Research output: Contribution to journal › Article › peer-review

  14. Published

    Microbial diversity and genetic response to stress conditions of extremophilic bacteria isolated from the Escondida copper mine.

    Galleguillos, P. A., Hallberg, K. B., Johnson, D. B., Donati, E. R. (Editor), Viera, M. R. (Editor), Tavani, E. L. (Editor), Giaveno, M. A. (Editor), Lavalle, T. L. (Editor) & Chiacchiarini, P. A. (Editor), 1 Jan 2009, p. 55-58.

    Research output: Contribution to conference › Paper

  15. Published

    Microbial diversity and activity are increased by compost amendment of metal-contaminated soil.

    Farrell, M., Griffith, G. W., Hobbs, P. J., Perkins, W. T. & Jones, D. L., 1 Jan 2010, In: Fems Microbiology Ecology. 71, 1, p. 94-105

    Research output: Contribution to journal › Article › peer-review

  16. E-pub ahead of print

    Microbial degradation of bioplastic (PHBV) is limited by nutrient availability at high microplastic loadings

    Reay, M. K., Graf, M., Greenfield, L., Bargiela, R., Onyije, C., Lloyd, C. E. M., Bull, I. D., Evershed, R. P., Golyshin, P., Chadwick, D. & Jones, D. L., 29 Oct 2024, (E-pub ahead of print) In: Environmental Science: Advances.

    Research output: Contribution to journal › Article › peer-review

  17. Published

    Microbial contributions to climate change through carbon cycle feedbacks.

    Bardgett, R. D., Freeman, C. & Ostle, N. J., 1 Aug 2008, In: ISME Journal. 2, 8, p. 805-814

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

    Golyshin, P., Gertler, C., Gerdts, G., Timmis, K. N. & Golyshin, P. N., 1 Aug 2009, In: Fems Microbiology Ecology. 69, 2, p. 288-300

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Microbial competition for nitrogen and carbon is as intense in the subsoil as in the topsoil

    Jones, D., Magthab, E., Gleeson, D. B., Hill, P., Sanchez-Rodriguez, A. R., Roberts, P., Ge, T. & Murphy, D. V., Feb 2018, In: Soil Biology and Biochemistry. 117, p. 72-82

    Research output: Contribution to journal › Article › peer-review

  20. Published

    Microbial community succession in soil is mainly driven by carbon and nitrogen contents rather than phosphorus and sulphur contents

    Tang, S., Ma, Q., Marsden, K., Chadwick, D., Luo, Y., Kuzyakov, Y., Wu, L. & Jones, D. L., 1 May 2023, In: Soil Biology and Biochemistry. 180, 109019.

    Research output: Contribution to journal › Article › peer-review

  21. Published

    Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA

    Golyshin, P., Yakimov, M. M., La Cono, V., La Spada, G., Bortoluzzi, G., Messina, E., Smedile, F., Arcadi, E., Borghini, M., Ferrer, M., Schmitt-Kopplin, P., Hertkorn, N., Cray, J. A., Hallsworth, J. E., Golyshin, P. N. & Giuliano, L., 1 Feb 2015, In: Environmental Microbiology. 17, 2, p. 364-382

    Research output: Contribution to journal › Article › peer-review

  22. Published

    Microbial community of a saline mud volcano at San Biagio-Belpasso, Mt. Etna (Italy)

    Yakimov, M. M., Giuliano, L., Crisafi, E., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 May 2002, In: Environmental Microbiology. 4, 5, p. 249-256

    Research output: Contribution to journal › Article › peer-review

  23. Published

    Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine Lake Urania (eastern Mediterranean).

    Golyshin, P., Yakimov, M. M., Giuliano, L., Cappello, S., Denaro, R. & Golyshin, P. N., 1 Apr 2007, In: Origins of Life and Evolution of Biospheres. 37, 2, p. 177-188

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Microbial community changes in heathland soil communities along a geographical gradient: interaction with climate change manipulations.

    Sowerby, A., Emmett, B., Beier, C., Tietema, A., Penuelas, J., Estiatre, M., Van Meeteren, M. J., Hughes, S. & Freeman, C., 1 Oct 2005, In: Soil Biology and Biochemistry. 37, 10, p. 1805-1813

    Research output: Contribution to journal › Article › peer-review

  25. Published

    Microbial communities in passive remediation systems at three abandoned coal mine sites in the United Kingdom

    Falagan Rodriguez, C., Smail, I., Grail, B. & Johnson, D. B., Jul 2016, Proceedings IMWA 2016 . p. 796-803

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  26. Published

    Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste

    Diaby, N., Dold, B., Pfeifer, H. R., Holliger, C., Johnson, D. B. & Hallberg, K. B., 1 Feb 2007, In: Environmental Microbiology. 9, 2, p. 298-307

    Research output: Contribution to journal › Article › peer-review

  27. Published

    Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters

    Tulloch, C. L., Bargiela, R., Williams, G. B., Chernikova, T. N., Cotterell, B. M., Wellington, E. M. H., Christie-Oleza, J., Thomas, D. N., Jones, D. L. & Golyshin, P. N., 29 Apr 2024, In: Environmental Microbiome. 19, 1, 27.

    Research output: Contribution to journal › Article › peer-review

  28. Published

    Microbial communities and interactions in low pH environments

    Johnson, D. B., 2016, Acidophiles: Life in Extremely Acidic Environments. Quatrini, R. & Johnson, D. B. (eds.). Caister Academic Press Limited, p. 121-138

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  29. Published

    Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems

    Rowe, O. F., Sanchez-Espana, J., Hallberg, K. & Johnson, D. B., 1 Jul 2007, In: Environmental Microbiology. 9, 7, p. 1761-1771

    Research output: Contribution to journal › Article › peer-review

  30. Published

    Microbial biomass, activity, and community structure in horticultural soils under conventional and organic management strategies

    Ge, T., Hunan., C. A. O., Yuan, H., Li, B., Zhu, H., Peng, P., Li, K., Jones, D. L. & Wu, J., 30 Sept 2013, In: European Journal of Soil Biology. 58, p. 122-128

    Research output: Contribution to journal › Article › peer-review

  31. Published

    Microbial assimilation dynamics differs but total mineralization from added root and shoot residues is similar in agricultural Alfisols

    Xu, Y., Sun, L., Lal, R., Bol, R., Wang, Y., Gao, X., Ding, F., Liang, S., Li, S. & Wang, J., 1 Sept 2020, In: Soil Biology and Biochemistry. 148, 107901.

    Research output: Contribution to journal › Article › peer-review

  32. Published

    Microbial and plant uptake of free amino sugars in grassland soils

    Roberts, P. & Jones, D. L., Jun 2012, In: Soil Biology and Biochemistry. 49, p. 139-149

    Research output: Contribution to journal › Article › peer-review

  33. Published

    Microbial and nutrient pollution of coastal bathing waters in Mauritius.

    Daby, D., Turner, J. R. & Jago, C. F., 1 Feb 2002, In: Environment International. 27, 7, p. 555-566

    Research output: Contribution to journal › Article › peer-review

  34. E-pub ahead of print

    Microbial and mineral interactions decouple litter quality from soil organic matter formation

    Elias, D. M. O., Mason, K. E., Goodall, T., Taylor, A., Zhao, P., Otero-Fariña, A., Chen, H., Peacock, C. L., Ostle, N. J., Griffiths, R. I., Chapman, P. J., Holden, J., Banwart, S., McNamara, N. P. & Whitaker, J., 20 Nov 2024, (E-pub ahead of print) In: Nature Communications. 15, 1, p. 10063 1 p.

    Research output: Contribution to journal › Article › peer-review

  35. Published

    Microbial activity differentially regulates the vertical mobility of nitrogen compounds in soil

    Abaas, E., Hill, P. W., Roberts, P., Murphy, D. V. & Jones, D. L., Oct 2012, In: Soil Biology and Biochemistry. 53, p. 120-123

    Research output: Contribution to journal › Article › peer-review

  36. Published

    Microbial activity and nitrogen mineralization in forest mineral soils following heating: evaluation of post-fire effects.

    Choromanska, U. & DeLuca, T. H., 1 Feb 2002, In: Soil Biology and Biochemistry. 34, 2, p. 263-271

    Research output: Contribution to journal › Article › peer-review

  37. Published

    Microbial Diversity of a Disused Copper Mine Site (Parys Mountain, UK), Dominated by Intensive Eukaryotic Filamentous Growth

    Distaso, M., Bargiela, R., Johnson, B., McIntosh, O., Williams, G., Jones, D. L., Golyshin, P. & Golyshina, O., 24 Aug 2022, In: Microorganisms . 10, 9, 1694.

    Research output: Contribution to journal › Article › peer-review

  38. Published

    Microbial Diversity in Acidic Anaerobic Sediments at the Geothermal Caviahue-Copahue System, Argentina

    Willis, G., Hedrich, S., Ñancucheo, I., Johnson, D. B. & Donati, E. R., 1 Oct 2013, In: Advanced Materials Research. 825, p. 7-10

    Research output: Contribution to journal › Article › peer-review

  39. Published

    Microbial Communities of Polymetallic Deposits’ Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts

    Gavrilov, S. N., Korzhenkov, A. A., Kublanov, I. V., Bargiela, R., Zamana, L. V., Toshchakov, S. V., Golyshin, P. & Golyshina, O., 17 Jul 2019, In: Frontiers in Microbiology.

    Research output: Contribution to journal › Article › peer-review

  40. Published

    Microbial Communities in Sediments in Acidic, Metal-Rich Mine Lakes: Results from a Study in South-West Spain

    Falagan Rodriguez, C., Sánchez-España, F. J., Yusta, I. & Johnson, D. B., Nov 2015, In: Advanced Materials Research. 1130, p. 7-10

    Research output: Contribution to journal › Article › peer-review

  41. Published

    Microbes, Environmental Change and the Global Carbon Cycle

    Kang, H. & Freeman, C., 1 Mar 2016, Climate Change and Microbial Ecology: Current Research and Future Trends. Marxsen, J. (ed.). Caister Academic Press, p. 153-166

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  42. Published

    Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

    Graham, E. B., Knelman, J. E., Schindlbacher, A., Siciliano, S., Breulmann, M., Yannarell, A., Bemans, J. M., Abell, G., Philippot, L., Prosser, J., Foulquier, A., Yuste, J. C., Glanville, H. C., Jones, D., Angel, F., Salminen, J., Newton, R. J., Buergmann, H., Ingram, L. J., Hamer, U., Siljanen, H. M. P., Peltoniemi, K., Potthast, K., Baneras, L., Hartmann, M., Banerjee, S., Yu, R.-Q., Nogaro, G., Richter, A., Koranda, M., Castle, S. C., Goberna, M., Song, B., Chatterjee, A., Nunes, O. C., Lopes, A. R., Cao, Y., Kaisermann, A., Hallin, S., Strickland, M. S., Garcia-Pausas, J., Barba, J., Kang, H., Isobe, K., Papaspyrou, S., Pastorelli, R., Lagomarsino, A., Lindstrom, E. S., Basiliko, N. & Nemergut, D. R., 24 Feb 2016, In: Frontiers in Microbiology. 7

    Research output: Contribution to journal › Article › peer-review

  43. Published

    Microalgal community structure and primary production in Arctic and Antarctic sea ice: A synthesis.

    van Leeuwe, M., Tedesco, L., Arrigo, K. R., Assmy, P., Meiners, K. M., Rintala, J.-M., Selz, V., Thomas, D. N. & Stefels, J., 11 Jan 2018, In: Elementa: Science of the Anthropocene. 6, 4, 25 p.

    Research output: Contribution to journal › Article › peer-review

  44. Published

    Microalgae in Polar regions: Linking functional genomics and physiology with environmental conditions.

    Mock, T., Thomas, D. N., Margesin, R. (Editor), Schinner, F. (Editor), Marx, J. C. (Editor) & Gerday, C. (Editor), 1 Jan 2007, Psychrophiles: From Biodiversity to Biotechnology. 2007 ed. Springer Verlag, p. 285-312

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  45. Published

    Micro-structure Parameter Optimize Design of Short-fiber/whisker Reinforced Composite

    Liu, Q., Li, M., Liu, Q. Y., Liu, X. Y. & Liang, N. G., 1 Jan 2001, In: Chinese Journal of Aeronautics. 14, 3, p. 147-154

    Research output: Contribution to journal › Article › peer-review

  46. Published

    Micro-scale variability of contaminants in surface sediments : the implications for sampling.

    Mudge, S. M., Assinder, D. J. & Russell, A. T., 1 Jan 2002, 2002 ed. Unknown.

    Research output: Book/Report › Commissioned report

  47. Published

    Micro-scale geochemical and crystallographic analysis of Buccinum undatum statoliths supports an annual periodicity of growth ring deposition

    Hollyman, P., Chenery, S., Ignatyev, C., Laptikhovsky, V. & Richardson, C., 5 Nov 2019, In: Chemical Geology. 526, p. 153-164 30 p.

    Research output: Contribution to journal › Article › peer-review

  48. Published

    Micro-optodes in a sea ice: A new approach to investigate oxygen dynamics during sea ice formation.

    Mock, T., Dieckmann, G. S., Haas, C., Tison, J. L., Krell, A., Belem, A. L., Papadimitriou, S. & Thomas, D. N., 23 Oct 2002, In: Aquatic Microbial Ecology. 29, 3, p. 297-306

    Research output: Contribution to journal › Article › peer-review

  49. Published

    Micro-heterotrophs and the Dynamics of Dissolved Organic Material.

    Williams, P. J. & Kirchman, D. J. (Editor), 1 Jan 2000, Microbial Ecology of the Oceans. 2000 ed. Wiley–Liss, p. 542

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  50. Published

    Micro-Nano Technologies for Cell Manipulation and Subcellular Monitoring

    Campo, E., Lopez-Martinez, M. J., Campo, E. M. & Fazel-Rezai, R. (Editor), 29 Aug 2011, Biomedical Engineering: From Theory to Applications. 2011 ed. p. 275-298

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

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