College of Science & Engineering

  1. Article › Research › Peer-reviewed
  2. Published

    Genetic variation at microsatellite Loci in northern populations of the European flat oyster (Ostrea edulis).

    Sobolewska, H. & Beaumont, A. R., 1 Aug 2005, In: Journal of the Marine Biological Association of the United Kingdom. 85, 4, p. 955-960

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Genetic variation in a small bivalve along a retreating glacier fjord, King George Island, Antarctica.

    Muñoz-Ramirez, C., Beltrán-Concha, M., Pérez-Araneda, K., Sands, C., Barnes, D., Roman-Gonzalez, A., De Lecea, A., Retallick, K., Van Landeghem, K., Sheen, K., Gonnelli, K., Scourse, J. D., Bascur, M. & Brante, A., 31 Dec 2021, In: Revista de Biología Marina y Oceanografía. 56, 2, p. 151-156

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

    Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Mar 2020, In: Nature Catalysis. 3, 3, p. 319-328

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Genetically mediated anti-predator responses in bivalve molluscs.

    Fässler, S. M. & Kaiser, M. J., 15 Jul 2008, In: Marine Ecology Progress Series. 363, p. 217-225

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Genetics of Scottish populations of the native oyster, Ostrea edulis: gene flow, human intervention and conservation.

    Beaumont, A. R., Garcia, M. T., Honig, S. & Low, P., 1 Oct 2006, In: Aquatic Living Resources. 19, 4, p. 389-402

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Genetics of superionic conductivity in lithium lanthanum titanates

    Jay, E. E., Rushton, M. J. D., Chroneos, A., Grimes, R. W. & Kilner, J. A., 2015, In: Physical Chemistry Chemical Physics. 17, 1, p. 178-183

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Genome Analysis of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans CF27

    Talla, E., Hedrich, S., Ji, B. Y., Johnson, D. B. & Bonnefoy, V., 1 Oct 2013, In: Advanced Materials Research. 825, p. 145-148

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution

    Dittrich, C., Hoelzl, F., Smith, S., Fouilloux, C. A., Parker, D. J., O'Connell, L. A., Knowles, L. S., Hughes, M., Fewings, A., Morgan, R., Rojas, B. & Comeault, A. A., 5 Jun 2024, In: Genome Biology and Evolution. 16, 6

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

    Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

    Research output: Contribution to journalArticlepeer-review

  11. Published

    Genome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix

    Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Genome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23T

    Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Genome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

    Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

    Research output: Contribution to journalArticlepeer-review

  16. Published

    Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

    Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220

    Research output: Contribution to journalArticlepeer-review

  17. Published

    Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

    Hargreaves, A. D., Zhou, L., Christensen, J., Marletaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Seriwaka, K., Fox, B. A., Taylor, W. R., Mulley, J., Zhang, G., Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America: PNAS. 114, 29, p. 7677–7682

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Genome sequence of a diverse goose circovirus recovered from greylag goose

    Stenzel, T., Farkas, K. & Varsani, A., 30 Jul 2015, In: Genome Announcements. 3, 4, e00767-15.

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

    Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

    Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Jul 2006, In: Nature Biotechnology. 24, 8, p. 997-1004 8 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Genome sequences of Beet curly top Iran virus, Oat dwarf virus, Turnip curly top virus, and wheat dwarf virus identified in leafhoppers

    Kamali, M., Heydarnejad, J., Pouramini, N., Masumi, H., Farkas, K., Kraberger, S. & Varsani, A., 23 Feb 2017, In: Genome Announcements. 5, 8, e01674-16.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

    Kirkness, E. F., Hass, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubio, J. M., Ribeiro, J. M., Rozas, J., Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguade, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the USA. 107, 27, p. 12168-12173

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis.

    Card, D. C., Vonk, F. J., Smallbrugge, S., Casewell, N. R., Wüster, W., Castoe, T. A., Schuett, G. W. & Booth, W., 31 Mar 2021, In: Scientific Reports. 11, 1, 9 p., 7271.

    Research output: Contribution to journalArticlepeer-review

  24. Published

    Genomic analysis of bacteria in the Acute Oak Decline pathobiome

    Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Jan 2019, In: Microbial Genomics. 5, 1, 15 p.

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Genomic and mechanistic insights into the biodegradation of organic pollutants.

    Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions

    Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

    Malinsky, M., Challis, R. J., Tyers, A. M., Schiffels, S., Terai, Y., Ngatunga, B. P., Miska, E. A., Durbin, R., Genner, M. J. & Turner, G. F., 18 Dec 2015, In: Science. 350, 6267, p. 1493-1498

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Genomic organisation of the seven ParaHox genes of coelacanths

    Mulley, J. F. & Holland, P. W., 1 Sept 2014, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 322, 6, p. 352-358

    Research output: Contribution to journalArticlepeer-review

  29. Published

    Genomic signatures of admixture and selection are shared among populations of Zaprionus indianus across the western hemisphere

    Comeault, A., Kautt, A. F. & Matute, D. R., Dec 2021, In: Molecular Ecology. 30, 23, p. 6193-6210 18 p.

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

    La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.

    Research output: Contribution to journalArticlepeer-review

  31. Published

    Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

    Nielsen, E. E., Hemmer-Hansen, J., Poulsen, N. A., Loeschcke, V., Moen, T., Johansen, T., Mittelholzer, C., Taranger, G. L., Ogden, R. & Carvalho, G. R., 1 Dec 2009, In: BMC Evolutionary Biology. 9, p. 276

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Genomic survey of edible cockle (Cerastoderma edule) in the Northeast Atlantic: a baseline for sustainable management of its wild resources.

    Vera, M., Maroso, F., Wilmes, S-B., Malham, S., Groves, E., Hermida, M., Blanco, A., Fernandez, C., Bouza, C., Martinez, P. & Robins, P., 24 Feb 2022, In: Evolutionary Applications. 15, 2, p. 262-285 24 p.

    Research output: Contribution to journalArticlepeer-review

  33. E-pub ahead of print

    Genomics reveals broad hybridization in deeply divergent Palearctic grass and water snakes (Natrix spp.)

    Schöneberg, Y., Winter, S., Arribas, O., Di Nicola, M. R., Master, M., Owens, J. B., Rovatsos, M., Wüster, W., Janke, A. & Fritz, U., 18 Apr 2023, (E-pub ahead of print) In: Molecular Phylogenetics and Evolution. 9 p.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Genomoviruses associated with mountain and western pine beetles

    Kraberger, S., Hofstetter, R. W., Potter, K. A., Farkas, K. & Varsani, A., 2 Sept 2018, In: Virus Research. 256, p. 17-20

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales

    Coupland, K. & Johnson, D. B., 1 Apr 2004, In: Geobiology. 2, 2, p. 77-86

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Geoengineering: taking control of our planet's climate?

    Ridgwell, A., Freeman, C. & Lampitt, R., 13 Sept 2012, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 370, p. 4163-4165

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Geographic and gender shape differences in the carapace of Liocarcinus depurator (Brachyura : Portunidae) using geometric morphometrics and the influence of a digitizing method.

    Rufino, M. M., Abello, P. & Yule, A. B., 1 Aug 2006, In: Journal of Zoology. 269, 4, p. 458-465

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Geographic and temporal variations in turbulent heat loss from lakes: A global analysis across 45 lakes

    Woolway, R. I., Verburg, P., Lenters, J. D., Merchant, C. J., Hamilton, D. P., Brookes, J., de Eyto, E., Kelly, S., Healey, N. C., Hook, S., Laas, A., Pierson, D., Rusak, J. A., Kuha, J., Karjalainen, J., Kallio, K., Lepistoe, A. & Jones, I. D., 1 Nov 2018, In: Limnology and Oceanography. 63, 6, p. 2436-2449

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Geographic distribution: Bothriopsis taeniata or Bothrops taeniatus (Speckled forest-pitviper).

    Wuster, W., Freire, L. A., Garcia, F., Wüster, W. & Kuch, U., 1 Jan 2003, In: Herpetological Review. 34, p. 263

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Geographical Ecology of Dry Forest Tree Communities in the West Indies

    Franklin, J., Andrade, R., Daniels, M. L., Fairbairn, P., Fandino, M. C., Gillespie, T. W., González, G., González, O., Imbert, D., Kapos, V., Kelly, D. L., Marcano-Vega, H., Meléndez-Ackerman, E. J., McLaren, K. P., McDonald, M. A., Ripplinger, J., Rojas-Sandoval, J., Ross, M. S., Ruiz, J., Steadman, D. W., Tanner, E. V. J., Terrill, I. & Vennetier, M., May 2018, In: Journal of Biogeography. 45, 5, p. 1168-1181

    Research output: Contribution to journalArticlepeer-review

  41. Published

    Geographical ancestry of Lake Malawi's cichlid fish diversity

    Genner, M. J., Ngatunga, B. P., Mzighani, S., Smith, A. & Turner, G. F., 10 Jun 2015, In: Biology Letters. 11, 6, p. Article Number: 20150232

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Geographical structure of genetic diversity in Loudetia simplex (Poaceae) in Madagascar and South Africa

    Hagl, P. A., Gargiulo, R., Fay, M. F., Solofondranohatra, C., Salmona, J., Suescun, U., Rakotomalala, N., Lehmann, C. E. R., Besnard, G., Papadopulos, A. S. T. & Vorontsova, M. S., 15 Apr 2021, In: Botanical Journal of the Linnean Society. 196, 1, p. 81-99 19 p.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Geographical variation in carbon dioxide fluxes from soils in agro-ecosystems and its implications for life-cycle assessment.

    Koerber, G. R., Edwards-Jones, G., Hill, P. W., Mila I Canals, L., Nyeko, P., York, E. H. & Jones, D. L., 1 Apr 2009, In: Journal of Applied Ecology. 46, 2, p. 306-314

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Geographical variation in the carbon, nitrogen, and phosphorus content of blue mussels, Mytilus edulis

    van der Schatte Olivier, A., Le Vay, L., Malham, S. K., Christie, M., Wilson, J., Allender, S., Schmidlin, S., Brewin, J. M. & Jones, L., Jun 2021, In: Marine pollution bulletin. 167, 112291.

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Geological settings and seafloor morphodynamic evolution linked to methane seepage

    Van Landeghem, K. J., Niemann, H., Steinle, L. I., O'Reilly, S. S., Huws, D. G. & Croker, P. F., 28 Apr 2015, In: Geo-Marine Letters. 35, 4, p. 289-304

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Geometric Aspects of Multiagent Systems.

    Porter, T., 1 Aug 2003, In: Electronic Notes in Theoretical Computer Science. 81, p. 73-98

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Geometric, electronic and elastic properties of dental silver amalgam γ-(Ag3Sn), γ1-(Ag2Hg3), γ2-(Sn8Hg) phases, comparison of experiment and theory.

    Chasse, G. A., Davies, R. A., Ardalan, S., Mu, W. H., Tian, K., Farsaikiya, F., Darvell, B. W. & Chass, G. A., 1 May 2010, In: Intermetallics. 18, 5, p. 756-760

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Geometrid moth assemblages reflect high conservation value of naturally regenerated secondary forests in temperate China

    Zou, Y., Sang, W., Warren-Thomas, E. & Axmacher, J. C., 15 Aug 2016, In: Forest Ecology and Management. 374, p. 111-118

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Geomicrobiology of extremely acidic subsurface environments

    Johnson, D. B., 1 Jul 2012, In: Fems Microbiology Ecology. 81, 1, p. 2-12

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Geostatistical analysis of densities of Liocarcinus depurator (Brachyura: Portunidae) on the western Mediterranean from 1994 to 2003.

    Rufino, M. M., Maynou, F., Abello, P., Yule, A. B. & De Sola, L. G., 1 Jul 2006, In: Marine Biology. 149, 4, p. 855-864

    Research output: Contribution to journalArticlepeer-review

  51. Published

    Gestation alters the gut microbiota of an oviparous lizard

    Trevelline, B. K., MacLeod, K. J., Langkilde, T. & Kohl, K. D., 1 Jul 2019, In: Fems Microbiology Ecology. 95, 7

    Research output: Contribution to journalArticlepeer-review