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School of Environmental & Natural Sciences

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  1. Published

    Environmental, Biogeographic, and Biochemical Patterns of Archaea of the Family Ferroplasmaceae

    Golyshina, O. V., 17 Jun 2011, In: Applied and Environmental Microbiology. 77, 15, p. 5071-5078

    Research output: Contribution to journal › Review article › peer-review

  2. Published

    Acidiplasma aeolicum gen. nov., sp nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. Nov

    Golyshina, O. V., Yakimov, M. M., Lunsdorf, H., Ferrer, M., Nimtz, M., Timmis, K. N., Wray, V., Tindall, B. J. & Golyshin, P. N., 1 Nov 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 2815-2823

    Research output: Contribution to journal › Article › peer-review

  3. Published

    Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT

    Golyshina, O., Hai, T., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., LaCono, V., Smedile, F., Slesarev, A., Rojo, D., Barbas, C., Ferrer, M., Yakimov, M. M. & Golyshin, P., 16 Jun 2017, In: Scientific Reports. 7, 3682.

    Research output: Contribution to journal › Article › peer-review

  4. Published

    Diversity of “Ca. Micrarchaeota” in two distinct types of acidic environments and their associations with Thermoplasmatales

    Golyshina, O., Bargiela, R., Toshchakov, S. V., Chernyh, N. A., Ramayah, S., Korzhenkov, A. A., Kublanov, I. V. & Golyshin, P., 15 Jun 2019, In: Genes. 10, 6, 461.

    Research output: Contribution to journal › Article › peer-review

  5. Published

    Cuniculiplasmataceae, their ecogenomic and metabolic patterns and interactions with ‘ARMAN’

    Golyshina, O. V., Bargiela, R. & Golyshin, P. N., Jan 2019, In: Extremophiles. 23, 1, p. 1-7 7 p.

    Research output: Contribution to journal › Article › peer-review

  6. Published

    Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

    Golyshina, O., Kublanov, I. V., Hai, T., Korzhenkov, A. A., Lunsdorf, H., Nechitaylo, T. Y., Toshchakov, S. V. & Golyshin, P., Dec 2016, In: Scientific Reports. 6, 39034.

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

    Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

    Research output: Contribution to journal › Article › peer-review

  8. Published

    “ARMAN” archaea depend on association with euryarchaeal host in culture and in situ

    Golyshina, O., Toshchakov, S. V., Makarova, K. S., Gavrilov, S. N., Korzhenkov, A. A., La Cono, V., Arcadi, E., Nechitaylo, T. Y., Ferrer, M., Kublanov, I. V., Wolf, Y. I., Yakimov, M. M. & Golyshin, P., 2017, In: Nature Communications. 8, 60.

    Research output: Contribution to journal › Article › peer-review

  9. Published

    The novel extremely acidophilic, cell-wall-deficient archaeon Cuniculiplasma divulgatum gen. nov., sp. nov. represents a new family, Cuniculiplasmataceae fam. nov., of the order Thermoplasmatales

    Golyshina, O., Lünsdorf, H., Kublanov, I. V., Goldenstein, N. I., Hinrichs, K-U. & Golyshin, P., Jan 2016, In: International Journal of Systematic and Evolutionary Microbiology. 66, 1, p. 332-340

    Research output: Contribution to journal › Article › peer-review

  10. Published

    The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria

    Golyshina, O., Golyshin, P., Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glockner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M. & Cambon-Bonavita, M. A., 1 Sept 2014, In: Environmental Microbiology. 16, 9, p. 2723-2738

    Research output: Contribution to journal › Article › peer-review

  11. Published

    Low temperature induced systems failure in Escherichia coli: Insights from rescue by cold-adapted chaperones.

    Golyshin, P., Strocchi, M., Ferrer, M., Timmis, K. N. & Golyshin, P. N., 1 Jan 2006, In: Proteomics. 6, 1, p. 193-206

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Vnekletochnye shchelochnye ribonukleazy batsill vechnomerzlykh gruntov kolymskoĭ nizmennosti

    Golyshin, P. N., Kombarova, S. P., Riabchenko, N. F., Vorob'eva, E. A., Soina, V. S., Dement'ev, A. A. & Shliapnikov, S. V., 1 Nov 1993, In: Prikladnaia biokhimiia i mikrobiologiia. 29, 6, p. 844-50 7 p.

    Research output: Contribution to journal › Article › peer-review

  13. Published

    Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation

    Golyshin, P., Genovese, M., Crisafi, F., Denaro, R., Cappello, S., Russo, D., Calogero, R., Santisi, S., Catalfamo, M., Modica, A., Smedile, F., Genovese, L., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., 14 Apr 2014, In: Frontiers in Microbiology.

    Research output: Contribution to journal › Article › peer-review

  14. Published

    Characterization and role of a metalloprotease induced by chitin in Serratia sp KCK.

    Golyshin, P., Kim, H. S., Golyshin, P. N. & Timmis, K. N., 1 Nov 2007, In: Journal of Industrial Microbiology and Biotechnology. 34, 11, p. 715-721

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Metagenomics approaches in Systems Microbiology.

    Golyshin, P., Vieities, J. M., Guazzaroni, M. E., Beloqui, A., Golyshin, P. N. & Ferrer, M., 1 Jan 2009, In: FEMS Microbiology Reviews. 33, 1, p. 236-255

    Research output: Contribution to journal › Article › peer-review

  16. Published

    Bioreduction of Sheep Carcasses Effectively Contains and Reduces Pathogen Levels under Operational and Simulated Breakdown Conditions

    Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J. E. & Williams, A. P., 21 May 2013, In: Environmental Science and Technology. 47, 10, p. 5267–5275

    Research output: Contribution to journal › Article › peer-review

  17. Published

    Methylorosula polaris gen. nov., sp. nov., an aerobic, facultatively methylotrophic psychrotolerant bacterium from tundra wetland soil

    Golyshin, P., Berestovskaya, J. J., Kotsyurbenko, O. R., Tourova, T. P., Kolganova, T. V., Doronina, N. V., Golyshin, P. N. & Vasilyeva, L. V., 1 Mar 2012, In: International Journal of Systematic Evolutionary Microbiology. 62, Pt 3, p. 638-646

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Mining genomes and 'metagenomes' for novel catalysts.

    Golyshin, P., Ferrer, M., Martinez-Abarca, F. & Golyshin, P. N., 1 Dec 2005, In: Current Opinion in Biotechnology. 16, 6, p. 588-593

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Upstream-independent ribosomal RNA amplification analysis (URA): a new approach to characterizing the diversity of natural microbial communities.

    Golyshin, P., Yakimov, M. M., Giuliano, L., Timmis, K. N. & Golyshin, P. N., 1 Oct 2001, In: Environmental Microbiology. 3, 10, p. 662-666

    Research output: Contribution to journal › Article › peer-review

  20. Published

    The use of biosurfactants in flotation: application for the removal of metal ions.

    Golyshin, P., Zouboulis, A. I., Matis, K. A., Lazaridis, N. K. & Golyshin, P. N., 1 Nov 2003, In: Minerals Engineering. 16, 11, p. 1231-1236

    Research output: Contribution to journal › Article › peer-review

  21. Published
  22. Published

    Analysis of storage livid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.

    Golyshin, P., Kalscheuer, R., Stoveken, T., Malkus, U., Reichelt, R., Golyshin, P. N., Sabirova, J. S., Ferrer, M., Timmis, K. N. & Steinbuchel, A., 1 Feb 2007, In: Journal of Bacteriology. 189, 3, p. 918-928

    Research output: Contribution to journal › Article › peer-review

  23. Published

    Oleiphilaceae fam. nov., to include Oleiphilus messinensis gen. nov., sp nov., a novel marine bacterium that obligately utilizes hydrocarbons.

    Golyshin, P. N., Chernikova, T. N., Abraham, W. R., Lunsdorf, H., Timmis, K. N. & Yakimov, M. M., 1 May 2002, In: International Journal of Systematic and Evolutionary Microbiology. 52, 3, p. 901-911

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine Lake Urania (eastern Mediterranean).

    Golyshin, P., Yakimov, M. M., Giuliano, L., Cappello, S., Denaro, R. & Golyshin, P. N., 1 Apr 2007, In: Origins of Life and Evolution of Biospheres. 37, 2, p. 177-188

    Research output: Contribution to journal › Article › peer-review

  25. Published

    Sequence and structure analysis of crytic plasmid pN30 from oil-oxidising strain Rhodococcus erythropolis 30.

    Golyshin, P., Ryabchenko, L. E., Novikov, A. D., Golyshin, P. N. & Yanenko, A. S., 1 Dec 2005, In: Russian Journal of Genetics. 41, 12, p. 1434-1436

    Research output: Contribution to journal › Article › peer-review

  26. Published

    Extracellular polyhydroxyalkanoates produced by genetically engineered microorganisms

    Golyshin, P., Sabirova, J. S., Ferrer, M., Abraham, W. R., Luensdorf, H., Timmis, K. N. & Golyshin, P. N., 14 Feb 2007, Patent No. European Patent EP1752532

    Research output: Patent

  27. Published

    Functional genome analysis of Alcanivorax borkumensis SK2.

    Golyshin, P. N., 1 Jan 2007.

    Research output: Contribution to conference › Paper

  28. Published
  29. Published

    Mining nature for new protein diversity.

    Golyshin, P. N., 7 Mar 2008.

    Research output: Contribution to conference › Paper

  30. Published

    Fate of prions in soil: degradation of recombinant prion in aqueous extracts from soil and casts of two earthworm species.

    Golyshin, P., Nechitaylo, T. Y., Timmis, K. N., Byzov, B. A., Kurakov, A. V., Belogolova, E., Jones, D. L., Ferrer, M. & Golyshin, P. N., 1 Jul 2010, In: Soil Biology and Biochemistry. 42, 7, p. 1168-1171

    Research output: Contribution to journal › Article › peer-review

  31. Published

    Limits of life in MgCI2-containing environments: chaotropicity defines the window.

    Golyshin, P., Hallsworth, J. E., Yakimov, M. M., Golyshin, P. N., Gillion, J. L., D'Auria, G., de Lima Alves, F., La Cono, V., Genovese, M., McKew, B. A., Hayes, S. L., Harris, G., Giuliano, L., Timmis, K. N. & McGenity, T. J., 1 Mar 2007, In: Environmental Microbiology. 9, 3, p. 801-813

    Research output: Contribution to journal › Article › peer-review

  32. Published

    Fate of pathogens in a simulated bioreduction system for livestock carcasses

    Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G. & Williams, A. P., 1 May 2012, In: Waste Management. 32, 5, p. 933-938

    Research output: Contribution to journal › Article › peer-review

  33. Published

    Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea).

    Golyshin, P., Yakimov, M. M., La Cono, V., Smedile, F., DeLuca, T., Juarez, S., Ciordia, S., Fernandez, M., Albar, J. P., Ferrer, M., Golyshin, P. N. & Giuliano, L., 1 Jun 2011, In: ISME Journal. 5, p. 945-961

    Research output: Contribution to journal › Article › peer-review

  34. Published

    Recombinant acylheptapeptide lichenysir: High level of production by Bacillus subtilis cells.

    Golyshin, P., Yakimov, M. M., Giuliano, L., Timmis, K. N. & Golyshin, P. N., 1 Apr 2000, In: Journal of Molecular Microbiology and Biotechnology. 2, 2, p. 217-224

    Research output: Contribution to journal › Article › peer-review

  35. Published

    Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: Prokaryotes and environmental settings

    Golyshin, P., Golyshina, O., La Cono, V., Smedile, F., Bortoluzzi, G., Arcadi, E., Maimone, G., Messina, E., Borghini, M., Oliveri, E., Mazzola, S., L'Haridon, S., Toffin, L., Genovese, L., Ferrer, M., Giuliano, L., Golyshin, P. N. & Yakimov, M. M., 1 Aug 2011, In: Environmental Microbiology. 13, 8, p. 2250-2268

    Research output: Contribution to journal › Article › peer-review

  36. Published

    Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracelluar polyhydroxyalkanoates by Alcanivorax orkumensis SK2.

    Golyshin, P., Sabirova, J. S., Ferrer, M., Lunsdorf, H., Wray, V., Kalscheuer, R., Steinbuchel, A., Timmis, K. N. & Golyshin, P. N., 1 Dec 2006, In: Journal of Bacteriology. 188, 24, p. 8452-8459

    Research output: Contribution to journal › Article › peer-review

  37. Published

    Family Alcanivoraceae.

    Golyshin, P., Golyshin, P. N., Harayama, S., Timmis, K. N., Yakimov, M. M. & Garrity, G. M. (ed.), 1 Jan 2005, Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Volume 2. 2005 ed. Springer Verlag, p. 295-298

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  38. Published
  39. Published

    Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

    Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220

    Research output: Contribution to journal › Article › peer-review

  40. Published

    Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

    Golyshin, P., Gertler, C., Gerdts, G., Timmis, K. N. & Golyshin, P. N., 1 Aug 2009, In: Fems Microbiology Ecology. 69, 2, p. 288-300

    Research output: Contribution to journal › Article › peer-review

  41. Published
  42. Published

    The ocean sampling day consortium

    Golyshin, P., Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R. Z., Sonnenschein, E. C., Cariou, T., O'Gara, F., Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Cacador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C. M., Luna, G. M., Quero, G. M., Loscher, C. R., Kremp, A., DeLorenzo, M. E., Ovreas, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C. P., Ramos, S., Magalhaes, C., Jude-Lemeilleur, F., Aguirre-Macedo, M. L., Wang, S., Poulton, N., Jones, S., Collin, R., Fuhrman, J. A., Conan, P., Alonso, C., Stambler, N., Goodwin, K., Yakimov, M. M., Baltar, F., Bodrossy, L., Van De Kamp, J., Frampton, D. M., Ostrowski, M., Van Ruth, P., Malthouse, P., Claus, S., Deneudt, K., Mortelmans, J., Pitois, S., Wallom, D., Salter, I., Costa, R., Schroeder, D. C., Kandil, M. M., Amaral, V., Biancalana, F., Santana, R., Pedrotti, M. L., Yoshida, T., Ogata, H., Ingleton, T., Munnik, K., Rodriguez-Ezpeleta, N., Berteaux-Lecellier, V., Wecker, P., Cancio, I., Vaulot, D., Bienhold, C., Ghazal, H., Chaouni, B., Essayeh, S., Ettamimi, S., Zaid, E., Boukhatem, N., Bouali, A., Chahboune, R., Barrijal, S., Timinouni, M., El Otmani, F., Bennani, M., Mea, M., Todorova, N., Karamfilov, V., ten Hoopen, P., Cochrane, G., L'Haridon, S., Bizsel, K. C., Vezzi, A., Lauro, F. M., Martin, P., Jensen, R. M., Hinks, J., Gebbels, S., Rosselli, R., De Pascale, F., Schiavon, R., dos Santos, A., Villar, E., Pesant, S., Cataletto, B., Malfatti, F., Edirisinghe, R., Silveira, J. A., Barbier, M., Turk, V., Tinta, T., Fuller, W. J., Salihoglu, I., Serakinci, N., Ergoren, M. C., Bresnan, E., Iriberri, J., Nyhus, P. A., Bente, E., Karlsen, H. E., Golyshin, P. N., Gasol, J. M., Moncheva, S., Dzhembekova, N., Johnson, Z., Sinigalliano, C. D., Gidley, M. L., Zingone, A., Danovaro, R. & Tsiamis, G., 19 Jun 2015, In: Giga Science. 4, 27

    Research output: Contribution to journal › Article › peer-review

  43. Published

    New tools for elucidating the ecology of micro-organisms in aquatic environments.

    Golyshin, P., Fry, J. C., Giuliano, L. & Golyshin, P. N., 5 Dec 2003, In: Fems Microbiology Ecology. 46, 3, p. 231

    Research output: Contribution to journal › Article › peer-review

  44. Published

    Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea

    Golyshin, P., Yakimov, M. M., La Cono, V., Smedile, F., Crisafi, F., Arcadi, E., Leonardi, M., Decembrini, F., Catalfamo, M., Bargiela, R., Ferrer, M., Golyshin, P. & Giuliano, L., 1 Dec 2014, In: Environmental Microbiology Reports. p. 709-722

    Research output: Contribution to journal › Article › peer-review

  45. Published

    Polychlorinated biphenyl-degrading microbial communities in soils and sediments.

    Golyshin, P., Abraham, W. R., Nogales, B., Golyshin, P. N., Pieper, D. H. & Timmis, K. N., 1 Jun 2002, In: Current Opinion in Microbiology. 5, 3, p. 246-253

    Research output: Contribution to journal › Article › peer-review

  46. Published
  47. Published

    Aerobic Hydrocarbon-Degrading Gammaproteobacteria: Oleiphilaceae and Relatives

    Golyshin, P., Jaeger, K-E., Toshchakov, S. V., Golyshina, O., Chernikova, T., Yakimov, M. M. & Ferrer, M., 27 Nov 2019, Handbook of Hydrocarbon and Lipid Microbiology Series. Taxonomy, Genomics and Ecophysiology of Hydrocarbon-Degrading Microbes. McGenity, T. J. (ed.). Springer, p. 153-166

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  48. Published

    Thermoleophilum album and Thermoleophilum minutum are culturable representatives of group 2 of the Rubrobacteridae (Actinobacteria)

    Golyshin, P., Yakimov, M. M., Lunsdorf, H. & Golyshin, P. N., 1 Mar 2003, In: International Journal of Systematic and Evolutionary Microbiology. 53, 2, p. 377-380

    Research output: Contribution to journal › Article › peer-review

  49. Published

    Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA

    Golyshin, P., Yakimov, M. M., La Cono, V., La Spada, G., Bortoluzzi, G., Messina, E., Smedile, F., Arcadi, E., Borghini, M., Ferrer, M., Schmitt-Kopplin, P., Hertkorn, N., Cray, J. A., Hallsworth, J. E., Golyshin, P. N. & Giuliano, L., 1 Feb 2015, In: Environmental Microbiology. 17, 2, p. 364-382

    Research output: Contribution to journal › Article › peer-review

  50. Published

    Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea.

    Golyshin, P., Yakimov, M. M., La Cono, V., Denaro, R., D'Auria, G., Decembrini, F., Timmis, K. N., Golyshin, P. N. & Giuliano, L., 1 Dec 2007, In: ISME Journal. 1, 8, p. 743-755

    Research output: Contribution to journal › Article › peer-review

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