School of Environmental & Natural Sciences
- Article › Research › Peer-reviewed
- Published
Accumulation of 2-aminophenoxazin-3-one-7-carboxylate during growth of Pseudomonas putida TW3 on 4-nitro-substituted substrates requires 4-hydroxylaminobenzoate lyase (PnbB)
Hughes, M., Baggs, M. J., Al-Dulayymi, J., Baird, M. & Williams, P. A., 1 Oct 2002, In: Applied and Environmental Microbiology. 68, 10, p. 4965-4970Research output: Contribution to journal › Article › peer-review
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Accurate crop yield predictions from modelling tree-crop interactions in gliricidia-maize agroforestry
Smethurst, P. J., Huth, N. I., Masikati, P., Sileshi, G. W., Akinnifesi, F. K., Wilson, J. & Sinclair, F., Jul 2017, In: Agricultural Systems. 155, p. 70-77Research output: Contribution to journal › Article › peer-review
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Acetamiprid fate in a sandy loam with contrasting soil organic matter contents: A comparison of the degradation, sorption and leaching of commercial neonicotinoid formulations
Potts, J., Jones, D. L., Macdonald, A., Ma, Q. & Cross, P., 10 Oct 2022, In: Science of the Total Environment. 842, 156711.Research output: Contribution to journal › Article › peer-review
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Acetate non-utilizing mutants of Arabidopsis: evidence that organic acids influence carbohydrate perception in germinating seedlings.
Hooks, M. A., Turner, J. E., Murphy, E. C. & Graham, I. A., 1 Apr 2004, In: Molecular Genetics and Genomics. 271, 3, p. 249-256Research output: Contribution to journal › Article › peer-review
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Acid mine drainage remediation options: a review
Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 3-14Research output: Contribution to journal › Article › peer-review
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Acidibacter ferrireducens gen. nov., sp. nov.: an acidophilic ferric iron-reducing gammaproteobacterium
Falagan, C. & Johnson, D. B., 13 Aug 2014, In: Extremophiles. 18, 6, p. 1067-1073Research output: Contribution to journal › Article › peer-review
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Acidic vesicles of Schistosoma mansoni.
Doenhoff, M. J., Carneiro-Santos, P., Thornhill, J., Doenhoff, M., Hagan, P. & Kusel, J., 1 Dec 2001, In: Parasitology Research. 87, 12, p. 1001-1006Research output: Contribution to journal › Article › peer-review
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Acidicapsa ferrireducens sp nov., Acidicapsa acidiphila sp nov., and Granulicella acidiphila sp nov.: novel acidobacteria isolated from metal-rich acidic waters
Falagan, C., Foesel, B. & Johnson, B., May 2017, In: Extremophiles. 21, 3, p. 459-469Research output: Contribution to journal › Article › peer-review
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Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae
Hallberg, K. B., Hedrich, S. & Johnson, D. B., 11 Feb 2011, In: Extremophiles. 15, 2, p. 271-9 9 p.Research output: Contribution to journal › Article › peer-review
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Acidification and anaerobic digestion change the phosphorus forms and distribution in particle fractions of cattle slurry and phosphorus dynamics in soil after application
Li, Y., Chen, Q., Ge, T., Chadwick, D. R. & Jones, D. L., 1 Dec 2020, In: Biosystems Engineering. 200, p. 101-111Research output: Contribution to journal › Article › peer-review
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Acidiplasma aeolicum gen. nov., sp nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. Nov
Golyshina, O. V., Yakimov, M. M., Lunsdorf, H., Ferrer, M., Nimtz, M., Timmis, K. N., Wray, V., Tindall, B. J. & Golyshin, P. N., 1 Nov 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 2815-2823Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus ferrianus sp. nov. an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph
Norris, P. R., Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., Mar 2020, In: Extremophiles. 24, 2, p. 329-337 9 p.Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus ferridurans, sp. nov.; an acidophilic iron- , sulfur- and hydrogen-metabolizing chemolithotrophic Gammaproteobacterium
Hedrich, S. & Johnson, D. B., 24 May 2013, In: International Journal of Systematic Evolutionary Microbiology.Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus ferriphilus sp. nov.: a facultatively anaerobic iron- and sulfur-metabolising extreme acidophile
Falagan, C. & Johnson, D. B., 1 Jan 2016, In: International Journal of Systematic and Evolutionary Microbiology. 66, 1, p. 206-211Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus ferrivorans, sp nov.; facultatively anaerobic, psychrotolerant iron-, and sulfur-oxidizing acidophiles isolated from metal mine-impacted environments.
Hallberg, K. B., Gonzalez-Toril, E. & Johnson, D. B., 1 Oct 2010, In: Extremophiles. 14, 1, p. 9-19Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus ferrooxidans
Quatrini, R. & Johnson, D. B., 1 Mar 2019, In: Trends in Microbiology. 27, 3, p. 282-283 2 p.Research output: Contribution to journal › Article › peer-review
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Acidithiobacillus sulfuriphilus sp. nov. an extremely acidophilic sulfur-oxidizing chemolithotroph isolated from a neutral pH environment
Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., 1 Sept 2019, In: International Journal of Systematic Evolutionary Microbiology. 69, 9, p. 2907-2913 7 p.Research output: Contribution to journal › Article › peer-review
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Acidithrix ferrooxidans gen. nov., sp. nov.; a filamentous and obligately heterotrophic, acidophilic member of the Actinobacteria that catalyzes dissimilatory oxido-reduction of iron
Jones, R. M. & Johnson, D. B., 29 Jan 2015, In: Research in Microbiology. 166, 2, p. 111-120Research output: Contribution to journal › Article › peer-review
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Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms
Seymour, M., Durance, I., Cosby, B. J., Ransom-Jones, E., Deiner, K., Ormerod, S. J., Colbourne, J. K., Wilgar, G., Carvalho, G., De Bruyn, M., Edwards, F., Emmett, B. A., Bik, H. M. & Creer, S., 22 Jan 2018, In: Communications Biology. 1, 4.Research output: Contribution to journal › Article › peer-review
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Acidocella aromatica sp. nov.: an acidophilic heterotrophic alphaproteobacterium with unusual phenotypic traits
Jones, R. M., Hedrich, S. & Johnson, D. B., 1 Sept 2013, In: Extremophiles. 17, 5, p. 841-850Research output: Contribution to journal › Article › peer-review
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Acidophile Microbiology in Space and Time
Johnson, D. B. & Quatrini, R., 21 Feb 2020, In: Current issues in molecular biology. 39, p. 63-76 14 p.Research output: Contribution to journal › Article › peer-review
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Acidophilic algae isolated from mine-impacted environments and their roles in sustaining heterotrophic acidophiles
Ňancucheo, I. & Johnson, D. B., 11 Sept 2012, In: Fontiers in Microbiology. 3, p. 325Research output: Contribution to journal › Article › peer-review
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Acquisition and Assimilation of Nitrogen as Peptide-Bound and D-Enantiomers of Amino Acids by Wheat
Hill, P. W., Quilliam, R. S., DeLuca, T. H., Farrar, J., Farrell, M., Roberts, P., Newsham, K. K., Hopkins, D. W., Bardgett, R. D. & Jones, D. L., 26 Apr 2011, In: PLoS ONE. 6, 4, p. e19220Research output: Contribution to journal › Article › peer-review
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Acting fast helps avoid extinction
Martin, T. G., Nally, S., Burbidge, A. A., Arnall, S., Garnett, S. T., Hayward, M. W., Lumsden, L. F., Menkhorst, P., McDonald-Madden, E. & Possingham, H. P., 1 Aug 2012, In: Conservation Letters. 5, 4, p. 274-280Research output: Contribution to journal › Article › peer-review
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Activated carbon amendments to soil alters nitrification rates in Scots pine forests.
Berglund, L. M., DeLuca, T. H. & Zackrisson, O., 1 Dec 2004, In: Soil Biology and Biochemistry. 36, 12, p. 2067-2073Research output: Contribution to journal › Article › peer-review
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Activity Budget and Sociality of the Northern Lesser Galago, Galago senegalensis
Grace Ellison, Jones, M. & Cain, B., 6 Nov 2023, In: International Journal of Primatology. p. 1-26Research output: Contribution to journal › Article › peer-review
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Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families
Popovic, A., Hai, T., Tchigvintsev, A., Hajighasemi, M., Nocek, B., Khusnutdinova, A. N., Brown, G., Glinos, J., Flick, R., Skarina, T., Chernikova, T., Yim, V., Bruls, T., Le Paslier, D., Yakimov, M. M., Joachimiak, A., Ferrer, M., Golyshina, O., Savchenko, A., Golyshin, P. & Yakunin, A. F., Mar 2017, In: Scientific Reports. 7, 44103, 44103.Research output: Contribution to journal › Article › peer-review
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Adapting Stand-Alone Renewable Energy Technologies for the Circular Economy through Eco-Design and Recycling
Gallagher, J., Basu, B., Browne, M., McCormack, S., Pilla, F. & Styles, D., Feb 2019, In: Journal of Industrial Ecology. 23, 1, p. 133-140Research output: Contribution to journal › Article › peer-review
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Adaptive radiation in Lesser Antillean lizards: molecular phylogenetics and species recognition in the Lesser Antillean dwarf gecko complex, Sphaerodactylus fantasticus.
Thorpe, R. S., Jones, A. G., Malhotra, A. & Surget-Groba, Y., 1 Mar 2008, In: Molecular Ecology. 17, 6, p. 1489-1504Research output: Contribution to journal › Article › peer-review
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Adaptive radiation of cichlid fish.
Turner, G. F., 9 Oct 2007, In: Current Biology. 17, 19, p. R827-R831Research output: Contribution to journal › Article › peer-review
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Adaptive search in juvenile plaice foraging for aggregated and dispersed prey.
Hill, S., Burrows, M. T. & Hughes, R. N., 1 Nov 2002, In: Journal of Fish Biology. 61, 5, p. 1255-1267Research output: Contribution to journal › Article › peer-review
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Addition of base cations increases microbial carbon use efficiency and biomass in acidic soils
Horn, E. L., Cooledge, E., Jones, D. L., Hoyle, F. C., Brailsford, F. L. & Murphy, D. V., Oct 2021, In: Soil Biology and Biochemistry. 161, 108392.Research output: Contribution to journal › Article › peer-review
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Addition of iron to agricultural topsoil and subsoil is not an effective C sequestration strategy
Button, E. S., Chadwick, D. R. & Jones, D. L., 1 Mar 2022, In: Geoderma. 409, 115646.Research output: Contribution to journal › Article › peer-review
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Additional carbon sequestration benefits of grassland diversity restoration.
De Deyn, G. B., Shiel, R. S., Ostle, N. J., McNamara, N. P., Oakley, S., Young, I., Freeman, C., Fenner, N., Quirk, H. & Bardgett, R. D., 1 Jun 2011, In: Journal of Applied Ecology. 48, 3, p. 600-608Research output: Contribution to journal › Article › peer-review
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Addressing human-tiger conflict using socio-ecological information on tolerance and risk
Struebig, M. J., Linkie, M., Deere, N. J., Martyr, D. J., Milliyanawati, B., Faulkner, S. C., Le Comber, S. C., Mangunjaya, F. M., Leader-Williams, N., McKay, J. E. & St John, F. A. V., 27 Aug 2018, In: Nature Communications. 9, 3455.Research output: Contribution to journal › Article › peer-review
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Adenovirus infection: An emerging factor in red squirrel conservation programmes
Everest, D. J., Shuttleworth, C., Stidworthy, M. F., Grierson, S. S., Duff, P. J. & Kenward, R. E., 1 Oct 2014, In: Mammal Review. 44, 3-4, p. 225-233Research output: Contribution to journal › Article › peer-review
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Adenovirus-associated deaths in red squirrels on Anglesey
Everest, D. J., Shuttleworth, C. & Stidworthy, M. F., 31 Oct 2008, In: The Veterinary record. 163, 14, p. 430Research output: Contribution to journal › Article › peer-review
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Admixture between ancient lineages, selection, and the formation of sympatric stickleback species-pairs
Dean, L., Magalhaes, I., Foote, A., D'Agostino, D., McGowan, S. & MacColl, A., Nov 2019, In: Molecular Biology and Evolution. 36, 11, p. 2481-2497Research output: Contribution to journal › Article › peer-review
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Adoption of Agroforestry in Northwest Viet Nam: What Roles Do Social and Cultural Norms Play?
Nguyen, M. P., Pagella, T., Catacutan, D. C., Nguyen, T. Q. & Sinclair, F., Apr 2021, In: Forests. 12, 4, 493.Research output: Contribution to journal › Article › peer-review
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Adoption of rice varieties - I. Age of varieties and patterns of variability
Witcombe, J. R., Khadka, K., Puri, R. R., Khanal, N. P., Sapkota, A. & Joshi, K. D., 1 Oct 2017, In: Experimental Agriculture. 53, 4, p. 512-527Research output: Contribution to journal › Article › peer-review
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Adoption of rice varieties. 2. Accelerating uptake
Witcombe, J. R., Khadka, K., Puri, R. R., Khanal, N. P., Sapkota, A. & Joshi, K. D., 1 Oct 2017, In: Experimental Agriculture. 53, 4, p. 627-643Research output: Contribution to journal › Article › peer-review
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Adrenergic responses of Antarctic fishes to extreme trauma.
Whiteley, N. M. & Egginton, S., 1 Feb 2000, In: Journal of Physiology. 523, Supplement S, p. 279P-280PResearch output: Contribution to journal › Article › peer-review
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Adsorption and desorption dynamics of citric acid anions in soil
Oburger, E., Leitner, D., Jones, D. L., Zygalakis, K. C., Schnepf, A. & Roose, T., 1 Oct 2011, In: European Journal of Soil Science. 62, 5, p. 733-742Research output: Contribution to journal › Article › peer-review
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Adult worm tegumental damage and egg-granulomas in praziquantel-resistant and -susceptible Schistosoma mansoni treated in vivo.
Liang, Y. S., Coles, G. C., Dai, J. R., Zhu, Y. C. & Doenhoff, M. J., 1 Dec 2002, In: Journal of Helminthology. 76, 4, p. 327-333Research output: Contribution to journal › Article › peer-review
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Advanced Processing of Food Waste Based Digestate for Mitigating Nitrogen Losses in a Winter Wheat Crop
Sanchez Rodriguez, A., Carswell, A. M., Shaw, R., Hunt, J., Saunders, K., Cotton, J., Chadwick, D., Jones, D. L. & Misselbrook, T. H., 17 Jul 2018, In: Frontiers in Sustainable Food Systems.Research output: Contribution to journal › Article › peer-review
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Advances and Challenges in the Synthesis of Poly(p-phenylene vinylene)-Based Polymers
Blayney, A. J., Perepichka, I. F., Wuld, F. & Perepichka, D. F., 23 Jun 2014, In: Israel Journal of Chemistry. 54, 5-6, p. 674-688Research output: Contribution to journal › Article › peer-review
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Advances in knowledge of processes in soil–tree–crop interactions in parkland systems in the West African Sahel: A review
Bayala, J., Sanou, J., Teklehaimanot, Z., Quedraogo, S. J., Kalinganire, A., Coe, R. & van Noordwijk, M., 11 Mar 2015, In: Agriculture, Ecosystems and Environment. 205, p. 25-35Research output: Contribution to journal › Article › peer-review
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Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos
Steyaert, M., Priestley, V., Osborne, O., Herraiz, A., Arnold, R. & Savolainen, V., 1 Nov 2020, In: Journal of Applied Ecology. 57, 11, p. 2234–2245Research output: Contribution to journal › Article › peer-review
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Aerobic and anaerobic oxidation of hydrogen by acidophilic bacteria
Hedrich, S. & Johnson, D. B., 1 Dec 2013, In: FEMS Microbiology Letters. 349, 1, p. 40-45Research output: Contribution to journal › Article › peer-review
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Aerodynamics of tip-reversal upstroke in a revolving pigeon wing
Crandell, K. E. & Tobalske, B. W., Jun 2011, In: Journal of Experimental Biology. 214, 11, p. 1867-1873Research output: Contribution to journal › Article › peer-review