Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata using functional metagenomics

Alcaide, M., Tchigvinstsev, A., Martinez-Martinez, M., Popovic, A., Reva, O. N., Lafraya, A., Bargiela, R. N., Nechitaylo, T. Y., Matesanz, R., Cambon-Bonavita, M., Jebbar, M., Savchenko, A., Yakimov, M. M., Golyshina, O., Yakunin, A. F., Golyshin, P., Ferrer, M. & The MAMBA Consortium., [. V., 16 Jan 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2125-2136

Research output: Contribution to journal › Article › peer-review

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

Alcaide, M., Stogios, P. J., Lafraya, A., Tchigvintsev, A., Flick, R., Bargiela, R., Chernikova, T. N., Reva, O. N., Hai, T., Leggewie, C. C., Katzke, N., La Cono, V., Matesanz, R., Jebbar, M., Jaeger, K., Yakimov, M. M., Yakunin, A. F., Golyshin, P. N., Golyshina, O. V., Savchenko, A. & Ferrer, M., 17 Dec 2014, In: Environmental Microbiology. 17, 2, p. 332-345

Research output: Contribution to journal › Article › peer-review

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family

Alcaide, M., Tornés, J., Stogios, P. J., Xu, X., Gertler, C., Di Leo, R., Bargiela, R., Lafraya, A., Guazzaroni, M. E., López‑Cortés, N., Chernikova, T. N., Golyshina, O. V., Nechitaylo, T. Y., Plumeier∥, I., Pieper∥, D. H., Yakimov, M. M., Savchenko, A., Golyshin, P. N. & Ferrer, M., 15 Aug 2013, In: Biochemical Journal. 454, 1, p. 157-166

Research output: Contribution to journal › Article › peer-review

Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx

Alcaide, M., Messina, E., Richter, M., Bargiela, R., Peplies, J., Huws, S. A., Newbold, C. J., Golyshin, P. N., Simón, M. A., López, G., Yakimov, M. M. & Ferrer, M., 12 Dec 2012, In: PLoS ONE. 7, 12, p. e51521

Research output: Contribution to journal › Article › peer-review

Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Mar 2020, In: Nature Catalysis. 3, 3, p. 319-328

Research output: Contribution to journal › Article › peer-review

Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data

Bargiela, R., Gertler, C., Mapelli, F., Magagnini, M., Chen, J., Daffonchio, D., Golyshin, P. & Ferrer, M., 24 Nov 2015, In: Frontiers in Microbiology. 6

Research output: Contribution to journal › Article › peer-review

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

Bargiela, R., Herbst, F. A., Martinez-Martinez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T. N., Barbas, C., von Bergen, M., Yakimov, M. M., Ferrer, M. & Golyshin, P. N., 27 Aug 2015, In: Proteomics. 15, 20, p. 3508-3520

Research output: Contribution to journal › Article › peer-review

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

Bargiela, R., Mapelli, F., Rojo, D., Chouaia, B., Tornés, J., Borin, S., Richter, M., Del Pozo, M. V., Cappello, S., Gertler, C., Genovese, M., Denaro, R., Martínez-Martínez, M., Fodelianakis, S., Amer, R. A., Bigazzi, D., Han, X., Chen, J., Chernikova, T. N., Golyshina, O. V., Mahjoubi, M., Jaouanil, A., Benzha, F., Magagnini, M., Hussein, E., Al-Horani, F., Cherif. A., [. V., Blaghen, M., Abdel-Fattah, Y. R., Kalogerakis, N., Barbas, C., Malkawi, H. I., Golyshin, P. N., Yakimov, M. M., Daffonchio, D. & Ferrer, M., 29 Jun 2015, In: Scientific Reports. 5, p. Article Number 11651

Research output: Contribution to journal › Article › peer-review

Proteome cold-shock response in the extremely acidophilic archaeon, Cuniculiplasma divulgatum

Bargiela, R., Lanthaler, K., Potter, C., Ferrer, M., Yakunin, A., Paizs, B., Golyshin, P. & Golyshina, O., 19 May 2020, In: Microorganisms . 8, 5

Research output: Contribution to journal › Article › peer-review

Evolutionary patterns of archaea predominant in acidic environment

Bargiela, R., Korzhenkov, A. A., McIntosh, O., Toshchakov, S. V., Yakimov, M., Golyshin, P. & Golyshina, O., 18 Jul 2023, In: Environmental Microbiome. 18, 1, 61.

Research output: Contribution to journal › Article › peer-review

Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species.

Beloqui, A., Nechitaylo, T. Y., Lopez-Cortes, N., Ghazi, A., Guazzaroni, M. E., Polaina, J., Strittmatter, A. W., Reva, O., Waliczek, A., Yakimov, M. M., Golyshina, O. V., Ferrer, M. & Golyshin, P. N., 1 Sept 2010, In: Applied and Environmental Microbiology. 76, 17, p. 5934-5946

Research output: Contribution to journal › Article › peer-review

Recent trends in industrial microbiology.

Beloqui, A., De Maria, P. D., Golyshin, P. N. & Ferrer, M., 1 Jun 2008, In: Current Opinion in Microbiology. 11, 3, p. 240-248

Research output: Contribution to journal › Article › peer-review

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships

Beloqui, A., Pita, M., Polaina, J., Martínez-Arias, A., Golyshina, O. V., Zumárraga, M., Yakimov, M. M., García-Arellano, H., Alcalde, M., Fernández, V. M., Elborough, K., Andreu, J. M., Ballesteros, A., Plou, F. J., Timmis, K. N., Ferrer, M. & Golyshin, P. N., 11 Aug 2006, In: Journal of Biological Chemistry. 281, 32, p. 22933-42 10 p.

Research output: Contribution to journal › Article › peer-review

Novel Hybrid Esterase-Haloacid Dehalogenase Enzyme

Beloqui, A., Polaina, J., Maria Vieites, J., Reyes-Duarte, D., Torres, R., Golyshina, O. V., Chernikova, T. N., Waliczek, A., Aharoni, A., Yakimov, M. M., Timmis, K. N., Golyshin, P. N. & Ferrer, M., 16 Aug 2010, In: ChemBioChem. 11, 14, p. 1975-1978

Research output: Contribution to journal › Article › peer-review

Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions

Bobadilla Fazzini, R. A., Bielecka, A., Quintas, A. K. P., Golyshin, P. N., Preto, M. J., Timmis, K. N. & dos Santos, V. A. P. M., Apr 2009, In: Proteomics. 9, 8, p. 2273-85 13 p.

Research output: Contribution to journal › Article › peer-review

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago)

Bortoluzzi, G., Romeo, T., La Cono, V., La Spada, G., Smedile, F., Esposito, V., Sabatino, G., Di Bella, M., Canese, S., Scotti, G., Bo, M., Giuliano, L., Golyshin, P., Jones, D., Yakimov, M. M. & Andaloro, F., Sept 2017, In: Geobiology. 15, 5, p. 664-677

Research output: Contribution to journal › Article › peer-review

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data

Bourguignon, N., Bargiela, R., Rojo, D., Chernikova, T., Lopez de Rodas, S. A., Garcia-Cantalejo, J., Nather, D. J., Golyshin, P., Barbas, C., Ferrero, M. & Ferrer, M., 1 Dec 2016, In: World Journal of Microbiology and Biotechnology. 32, 201

Research output: Contribution to journal › Article › peer-review

Rapid depletion of dissolved organic sulphur (DOS) in freshwaters

Brailsford, F. L., Glanville, H. C., Wang, D., Golyshin, P. N., Johnes, P. J., Yates, C. A. & Jones, D. L., 2 May 2020, In: Biogeochemistry. 149, 1, p. 105-113 9 p.

Research output: Contribution to journal › Article › peer-review

Microbial use of low molecular weight DOM in filtered and unfiltered freshwater: Role of ultra-small microorganisms and implications for water quality monitoring

Brailsford, F., Glanville, H., Marshall, M., Golyshin, P., Jones, P. J., Yates, C. A., Owen, A. T. & Jones, D. L., 15 Nov 2017, In: Science of the Total Environment. 598, p. 377-384

Research output: Contribution to journal › Article › peer-review

Nutrient enrichment induces a shift in dissolved organic carbon (DOC) metabolism in oligotrophic freshwater sediments

Brailsford, F., Glanville, H., Golyshin, P., Marshall, M., Lloyd, C., Johnes, P. & Jones, D. L., 10 Nov 2019, In: Science of the Total Environment. 690, p. 1131-1139

Research output: Contribution to journal › Article › peer-review

Land cover and nutrient enrichment regulates low-molecular weight dissolved organic matter turnover in freshwater ecosystems

Brailsford, F. L., Glanville, H. C., Marshall, M. R., Yates, C. A., Owen, A. T., Golyshin, P. N., Johnes, P. J. & Jones, D. L., Aug 2021, In: Limnology and Oceanography. 66, 8, p. 2979-2987 9 p.

Research output: Contribution to journal › Article › peer-review

Microbial uptake kinetics of dissolved organic carbon (DOC) compound groups from river water and sediments

Brailsford, F. L., Glanville, H. C., Golyshin, P. N., Johnes, P. J., Yates, C. A. & Jones, D. L., 2 Aug 2019, In: Scientific Reports. 9, 1, 11229.

Research output: Contribution to journal › Article › peer-review

Микроорганизмы из пищеварительного тракта дождевых червей

Byzov, B. A., Nechitaĭlo, T. I., Bumazhkin, B. K., Kurakov, A. V., Golyshin, P. N. & Zviagintsev, D. G., 8 Jul 2009, In: Mikrobiologiia. 78, 3, p. 404-13 10 p.

Research output: Contribution to journal › Article › peer-review

Culturable microorganisms from the earthworm digestive tract

Byzov, B. A., Nechitaylo, T. Y., Bumazhkin, B. K., Kurakov, A. V., Golyshin, P. N. & Zvyagintsev, D. G., Jun 2009, In: Microbiology. 78, 3, p. 360-368

Research output: Contribution to journal › Article › peer-review

Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase

Cea-Rama, I., Coscolín, C., Katsonis, P., Bargiela, R., Golyshin, P., Lichtarge, O., Ferrer, M. & Sanz-Aparicio, J., 2021, In: Computational and Structural Biotechnology Journal. 19, p. 2307-2317 11 p.

Research output: Contribution to journal › Article › peer-review

Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata

Chernikova, T., Bargiela, R., Toshchakov, S. V., Shivaraman, V., Lunev, E. A., Yakimov, M. M., Thomas, D. N. & Golyshin, P., 28 Oct 2020, In: Frontiers in Microbiology. 11, 572931.

Research output: Contribution to journal › Article › peer-review

Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK

Chernikova, T., Dallimore, J., Lunsdorf, H., Heipieper, H. J. & Golyshin, P., 1 Sept 2017, In: International Journal of Systematic Evolutionary Microbiology. 67, p. 3310-3317

Research output: Contribution to journal › Article › peer-review

Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

Chernyh, N. A., Neukirchen, S., Frolov, E. N., Sousa, F. L., Miroshnichenko, M. L., Merkel, A. Y., Pimenov, N. V., Sorokin, D. Y., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Lebedinsky, A. V., Cardoso Pereira, I. A. & Bonch-Osmolovskaya, E. A., Nov 2020, In: Nature Microbiology. 5, 11, p. 1428-+

Research output: Contribution to journal › Article › peer-review

Multidrug Resistance and High Prevalence of class 1 Integrons in Escherichia coli Isolated from Irrigation Water and Vegetables in Parts of Nsukka and Enugu, Nigeria

Chigor, C. B., Ibangha, I.-A. I., Onuora, V. C., Omotosho, O. E., Chernikova, T., Chigor, V. N. & Golyshin, P., 1 Apr 2017, In: Faseb Journal. 31, S1, 777.22.

Research output: Contribution to journal › Meeting Abstract › peer-review

Prevalence of integrons in multidrug‑resistant Escherichia coli isolates from waters and vegetables in Nsukka and Enugu, Southeast Nigeria

Chigor, C. B., Ibangha, I.-A. I., Nweze, N. O., Onuora, V. C., Ozochi, C. A., Titilawo, Y., Enebe, M. C., Chernikova, T., Golyshin, P. & Chigor, V. N., Aug 2022, In: Environmental Science and Pollution Research. 29, 40, p. 60945-60952

Research output: Contribution to journal › Article › peer-review

Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

Coscolín, C., Katzke, N., Garcia-Moyano, A., Navarro-Fernández, J., Almendral, D., Martinez-Martinez, M., Bollinger, A., Bargiela, R., Gerler, C., Chernikova, T. N., Rojo, D., Barbas, C., Tran, H., Golyshina, O. V., Koch, R., Yakimov, M. M., Bjerga, G. E. K., Golyshin, P. N., Jaeger, K.-E. & Ferrer, M., 9 Jan 2019, In: Applied and Environmental Microbiology. 85, 2, e02404-18.

Research output: Contribution to journal › Article › peer-review

Relationships between Substrate Promiscuity and Chiral Selectivity of Esterases from Phylogenetically and Environmentally Diverse Microorganisms

Coscolín, C., Martínez-Martínez, M., Chow, J., Bargiela, R., García-Moyano, A., Bjerga, G. E. K., Bollinger, A., Stokke, R., Steen, I. H., Golyshina, O., Yakimov, M. M., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., Golyshin, P. & Ferrer, M., 5 Jan 2018, In: Catalysts. 8, 1, 10.

Research output: Contribution to journal › Article › peer-review

Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline

Daffonchio, D., Borin, S., Brusa, T., Brusetti, L., van der Wielen, P., Bolhuis, H., Yakimov, M., D'Auria, G., Giuliano, L., Marty, D., Tamburini, C., McGenity, T., Hallsworth, J., Sass, A., Timmis, K., Tselepides, A., de Lange, G., Hubner, A., Thomson, J., Varnavas, S., Gasparoni, F., Gerber, H., Malinverno, E., Corselli, C., Garcin, J., McKew, B., Golyshin, P., Lampadariou, N., Polymenakou, P., Calore, D., Cenedese, S., Zanon, F. & Hoog, S., 9 Mar 2006, In: Nature. 440, 7081, p. 203-207

Research output: Contribution to journal › Article › peer-review

Bioremediation of Southern Mediterranean oil polluted sites comes of age

Daffonchio, D., Ferrer, M., Mapelli, F., Cherif, A., Lafraya, A., Malkawi, H. I., Yakimov, M. M., Abdel-Fattah, Y. R., Blaghen, M., Golyshin, P. N., Kalogerakis, N., Boon, N., Magagnini, M. & Fava, F., 25 Sept 2013, In: New Biotechnology. 30, 6, p. 743-748

Research output: Contribution to journal › Article › peer-review

ULIXES, unravelling and exploiting Mediterranean Sea microbial diversity and ecology for xenobiotics' and pollutants' clean up

Daffonchio, D., Mapelli, F., Cherif, A., Malkawi, H. I., Yakimov, M. M., Abdel-Fattah, Y. R., Blaghen, M., Golyshin, P. N., Ferrer, M., Kalogerakis, N., Boon, N., Magagnini, M. & Fava, F., Sept 2012, In: Reviews in Environmental Science and Bio/Technology. 11, 3, p. 207-211

Research output: Contribution to journal › Article › peer-review

Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail

Del Pozo, M. V., Fernández-Arrojo, L., Gil-Martínez, J., Montesinos, A., Chernikova, T. N., Nechitaylo, T. Y., Waliszek, A., Tortajada, M., Rojas, A., Huws, S. A., Golyshina, O., Newbold, C. M., Polaina, J., Ferrer, M. & Golyshin, P., 12 Sept 2012, In: Biotechnology for Biofuels. 5, p. 73

Research output: Contribution to journal › Article › peer-review

Degradation of Hydrocarbons and Heavy Metal Reduction by Marine Bacteria in Highly Contaminated Sediments

Dell'Anno, F., Brunet, C., van Zyl, L. J., Trindade, M., Golyshin, P., Dell'Anno, A., Ianora, A. & Sansone, C., 11 Sept 2020, In: Microorganisms . 8, 9

Research output: Contribution to journal › Article › peer-review

Microbiome enrichment from contaminated marine sediments unveils novel bacterial strains for petroleum hydrocarbon and heavy metal bioremediation

Dell'Anno, F., van Zyl, L. J., Trindade, M., Buschi, E., Cannavacciulo, A., Pepi, M., Sansone, C., Brunet, C., Ianora, A., de Pascale, D., Golyshin, P., Dell'Anno, A. & Rastelli, E., 15 Jan 2023, In: Environmental Pollution. 317, 120772.

Research output: Contribution to journal › Article › peer-review

Vnekletochnaia shchelochnaia ribonukleaza Bacillus thuringiensis var. subtoxicus

Dement'ev, A. A., Riabchenko, N. F., Protasevich, I. I., Golyshin, P. N., Stepanov, A. I., Orlov, V. M., Pustovaev, V. N., Makarov, A. A., Moiseev, G. P. & Karpeĭskiĭ, M. I., 1 Nov 1992, In: Molekuliarnaia biologiia. 26, 6, p. 1338-49 12 p.

Research output: Contribution to journal › Article › peer-review

Dve formy vnekletochnoĭ nizkomolekuliarnoĭ ribonukleazy Bacillus sp. BCF 247. Vydelenie i kharakteristika belka

Dement'ev, A. A., Golyshin, P. N., Riabchenko, N. F., Pustobaev, V. N. & Shliapnikov, S. V., Aug 1993, In: Biokhimiia (Moscow, Russia). 58, 8, p. 1258-65 8 p.

Research output: Contribution to journal › Article › peer-review

Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency

Denaro, R., Crisafi, F., Russo, D., Genovese, M., Messina, E., Genovese, L., Carbone, M., Ciavatta, M. L., Ferrer, M., Golyshin, P. & Yakimov, M. M., 1 Oct 2014, In: Marine Genomics. 17, October, p. 43-52

Research output: Contribution to journal › Article › peer-review

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline

Denman, S., Doonan, J., Ransom-Jones, E., Broberg, M., Plummer, S., Kirk, S. A., Scarlett, K., Griffiths, A., Kaczmarek, M., Foster, J., Peace, A., Golyshin, P., Hassard, F., Brown, N., Kenny, J. G. & McDonald, J., 2018, In: The ISME Journal. 12, p. 386-399

Research output: Contribution to journal › Article › peer-review

High representation of archaea across all depths in oxic and low-pH sediment layers underlying an acidic stream

Distaso, M., Bargiela, R., Brailsford, F., Williams, G., Wright, S., Lunev, E. A., Toshchakov, S. V., Yakimov, M. M., Jones, D. L., Golyshin, P. & Golyshina, O., 17 Nov 2020, In: Frontiers in Microbiology. 11, p. 576520

Research output: Contribution to journal › Article › peer-review

Microbial Diversity of a Disused Copper Mine Site (Parys Mountain, UK), Dominated by Intensive Eukaryotic Filamentous Growth

Distaso, M., Bargiela, R., Johnson, B., McIntosh, O., Williams, G., Jones, D. L., Golyshin, P. & Golyshina, O., 24 Aug 2022, In: Microorganisms . 10, 9, 1694.

Research output: Contribution to journal › Article › peer-review

Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins

Distaso, M., Chernikova, T., Bargiela, R., Coscolín, C., Stogios, P. J., Gonzalez-Alfonso, J. L., Lemak, S., Khusnutdinova, A., Plou, F. J., Evdokimova, E., Savchenko, A., Lunev, E., Yakimov, M. M., Golyshina, O., Ferrer, M., Yakunin, A. & Golyshin, P., 28 Feb 2023, In: Applied and Environmental Microbiology. 89, 2, p. e0170422 20 p.

Research output: Contribution to journal › Article › peer-review

The Mobility of the Cap Domain Is Essential for the Substrate Promiscuity of a Family IV Esterase from Sorghum Rhizosphere Microbiome

Distaso, M., Cea-Rama, I., Coscolín, C., Chernikova, T., Tran, H., Ferrer, M., Sanz-Aparico, J. & Golyshin, P., 31 Jan 2023, In: Applied and Environmental Microbiology. 89, 1, p. e0180722 e0180722.

Research output: Contribution to journal › Article › peer-review

Corrigendum: High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream

Distaso, M. A., Bargiela, R., Brailsford, F. L., Williams, G. B., Wright, S., Lunev, E. A., Toshchakov, S. V., Yakimov, M. M., Jones, D. L., Golyshin, P. N. & Golyshina, O. V., 29 Jan 2021, In: Frontiers in Microbiology. 12, p. 633015

Research output: Contribution to journal › Article › peer-review

The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline

Doonan, J., Denman, S., Gertler, C., Pachebat, J. A., Golyshin, P. N. & McDonald, J. E., 1 Jan 2015, In: Journal of Applied Microbiology. 118, 1, p. 193-201 9 p.

Research output: Contribution to journal › Article › peer-review