Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

Research output: Contribution to journal › Article › peer-review

Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

Research output: Contribution to journal › Article › peer-review

Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Mar 2020, In: Nature Catalysis. 3, 3, p. 319-328

Research output: Contribution to journal › Article › peer-review

Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx

Alcaide, M., Messina, E., Richter, M., Bargiela, R., Peplies, J., Huws, S. A., Newbold, C. J., Golyshin, P. N., Simón, M. A., López, G., Yakimov, M. M. & Ferrer, M., 12 Dec 2012, In: PLoS ONE. 7, 12, p. e51521

Research output: Contribution to journal › Article › peer-review

Functional consequences of single:double ring transitions in chaperonins: life in the cold.

Ferrer, M., Lunsdorf, H., Chernikova, T. N., Yakimov, M., Timmis, K. N. & Golyshin, P. N., 1 Jul 2004, In: Molecular Microbiology. 53, 1, p. 167-182

Research output: Contribution to journal › Article › peer-review

Functional Metagenomics Unveils a Multifunctional Glycosyl Hydrolase from the Family 43 Catalysing the Breakdown of Plant Polymers in the Calf Rumen

Ferrer, M., Ghazi, A., Beloqui, A., Vieites, J. M., Lopez-Cortes, N., Marın-Navarro, J., Nechitaylo, T. Y., Guazzaroni, M. E., Polaina, J., Waliczek, A., Chernikova, T. N., Reva, O. N., Golyshina, O. V. & Golyshin, P. N., 25 Jun 2012, In: PLoS ONE. 7, 6, p. e38134

Research output: Contribution to journal › Article › peer-review

Field-based assessment of the effect of conventional and biodegradable plastic mulch film on nitrogen partitioning, soil microbial diversity, and maize biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Golyshin, P., Evershed, R. P., Lloyd, C. E. M., Williams, G., Chadwick, D. & Jones, D. L., 1 Oct 2024, In: Applied Soil Ecology. 202, 105595.

Research output: Contribution to journal › Article › peer-review

Field response of N2O emissions, microbial communities, soil biochemical processes and winter barley growth to the addition of conventional and biodegradable microplastics

Greenfield, L. M., Graf, M., Rengaraj, S., Bargiela, R., Williams, G., Golyshin, P. N., Chadwick, D. R. & Jones, D. L., 15 Sept 2022, In: Agriculture, Ecosystems and Environment. 336, 108023.

Research output: Contribution to journal › Article › peer-review

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago)

Bortoluzzi, G., Romeo, T., La Cono, V., La Spada, G., Smedile, F., Esposito, V., Sabatino, G., Di Bella, M., Canese, S., Scotti, G., Bo, M., Giuliano, L., Golyshin, P., Jones, D., Yakimov, M. M. & Andaloro, F., Sept 2017, In: Geobiology. 15, 5, p. 664-677

Research output: Contribution to journal › Article › peer-review

Ferroplasma acidiphilum gen. nov., sp nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea.

Golyshina, O. V., Pivovarova, T. A., Karavaiko, G. I., Kondratéva, T. F., Moore, E. R., Abraham, W. R., Lünsdorf, H., Timmis, K. N., Yakimov, M. M. & Golyshin, P. N., 1 May 2000, In: International Journal of Systematic and Evolutionary Microbiology. 50 , 3, p. 997-1006 10 p.

Research output: Contribution to journal › Article › peer-review

Fate of prions in soil: degradation of recombinant prion in aqueous extracts from soil and casts of two earthworm species.

Golyshin, P., Nechitaylo, T. Y., Timmis, K. N., Byzov, B. A., Kurakov, A. V., Belogolova, E., Jones, D. L., Ferrer, M. & Golyshin, P. N., 1 Jul 2010, In: Soil Biology and Biochemistry. 42, 7, p. 1168-1171

Research output: Contribution to journal › Article › peer-review

Fate of pathogens in a simulated bioreduction system for livestock carcasses

Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G. & Williams, A. P., 1 May 2012, In: Waste Management. 32, 5, p. 933-938

Research output: Contribution to journal › Article › peer-review

Expression of a temperature-sensitive esterase in anovel chaperone-based Escherichia coli strain.

Ferrer, M., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 Aug 2004, In: Applied and Environmental Microbiology. 70, 8, p. 4499-4504

Research output: Contribution to journal › Article › peer-review

Evolutionary patterns of archaea predominant in acidic environment

Bargiela, R., Korzhenkov, A. A., McIntosh, O., Toshchakov, S. V., Yakimov, M., Golyshin, P. & Golyshina, O., 18 Jul 2023, In: Environmental Microbiome. 18, 1, 61.

Research output: Contribution to journal › Article › peer-review

Evaluating agar-plating and dilution-to-extinction isolation methods for generating oak-associated microbial culture collections

Ordonez Ordonez, A., Hussain, U., Cambon, M., Golyshin, P., Downie, J. & McDonald, J., 11 Feb 2025, In: ISME Communications. 5, 1, ycaf019.

Research output: Contribution to journal › Article › peer-review

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends

Ferrer, M., Martinez, M., Bargiela, R., Streit, W. R., Golyshina, O. & Golyshin, P., 1 Jan 2016, In: Microbial Biotechnology. 9, 1, p. 22-34

Research output: Contribution to journal › Article › peer-review

Enzymes for consumer products to achieve climate neutrality

Molina-Espeja, P., Sanz-Aparicio, J., Golyshin, P., Robles-Martin, A., Guallar, V., Beltrametti, F., Muller, M., Yakimov, M., Modregger, J., van Logchem, M., Corvini, P., Shahgaldian, P., Degering, C., Wieland, S., Timm, A., de Carvalho, C. C. C. R., Re, I., Daniotti, S., Thies, S., Jaeger, K.-E., Chow, J., Streit, W. R., Lottenbach, R., Rosch, R., Ansari, N. & Ferrer, M., 29 Apr 2023, In: Oxford Open Climate Change. 3, 1, kgad003.

Research output: Contribution to journal › Review article › peer-review

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Marasco, R., Fusi, M., Coscolín, C., Borozzi, A., Almendral, D., Bargiela, R., Gohlke neé Nutschel, C., Dittrich, J., Gohlke, H., Matesanz, R., Sanchez-Carrillo, S., Mapelli, F., Chernikova, T., Golyshin, P., Ferrer, M. & Daffonchio, D., 24 Feb 2023, In: Nature Communications. 14, 1, 1045.

Research output: Contribution to journal › Article › peer-review

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

Sorokin, D. Y., Kublanov, I. V., Gavrilov, S. N., Rojo, D., Roman, P., Golyshin, P., Slepak, V. Z., Smedile, F., Ferrer, M., Messina, E., La Cono, V. & Yakimov, M. M., Jan 2016, In: ISME Journal. 10, p. 240-252

Research output: Contribution to journal › Article › peer-review

Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation

Golyshin, P., Genovese, M., Crisafi, F., Denaro, R., Cappello, S., Russo, D., Calogero, R., Santisi, S., Catalfamo, M., Modica, A., Smedile, F., Genovese, L., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., 14 Apr 2014, In: Frontiers in Microbiology.

Research output: Contribution to journal › Article › peer-review

Effect of the earthworms lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo, T. Y., Yakimov, M. M., Godinho, M., Timmis, K. N., Belogolova, E., Byzov, B. A., Kurakov, A. V., Jones, D. L. & Golyshin, P. N., 1 Apr 2010, In: Microbial Ecology. 59, 3, p. 574-587

Research output: Contribution to journal › Article › peer-review

Dve formy vnekletochnoĭ nizkomolekuliarnoĭ ribonukleazy Bacillus sp. BCF 247. Vydelenie i kharakteristika belka

Dement'ev, A. A., Golyshin, P. N., Riabchenko, N. F., Pustobaev, V. N. & Shliapnikov, S. V., Aug 1993, In: Biokhimiia (Moscow, Russia). 58, 8, p. 1258-65 8 p.

Research output: Contribution to journal › Article › peer-review

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

Placido, A., Hai, T., Ferrer, M., Chernikova, T. N., Distaso, M. A., Armstrong, D., Yakunin, A. F., Toshchakov, S. V., Yakimov, M. M., Kublanov, I. V., Golyshina, O., Pesole, G., Ceci, L. R. & Golyshin, P., 1 Dec 2015, In: Applied Microbiology and Biotechnology. 99, 23, p. 10031-10046

Research output: Contribution to journal › Article › peer-review

Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species.

Beloqui, A., Nechitaylo, T. Y., Lopez-Cortes, N., Ghazi, A., Guazzaroni, M. E., Polaina, J., Strittmatter, A. W., Reva, O., Waliczek, A., Yakimov, M. M., Golyshina, O. V., Ferrer, M. & Golyshin, P. N., 1 Sept 2010, In: Applied and Environmental Microbiology. 76, 17, p. 5934-5946

Research output: Contribution to journal › Article › peer-review

Diversity of facultatively anaerobic microscopic mycelial fungi in soils.

Golyshin, P., Kurakov, A. V., Lavrent'ev, R. B., Nechitailo, T. Y., Golyshin, P. N. & Zvyagintsev, D. G., 1 Jan 2008, In: Microbiology. 77, 1, p. 90-98

Research output: Contribution to journal › Article › peer-review

Diversity of “Ca. Micrarchaeota” in two distinct types of acidic environments and their associations with Thermoplasmatales

Golyshina, O., Bargiela, R., Toshchakov, S. V., Chernyh, N. A., Ramayah, S., Korzhenkov, A. A., Kublanov, I. V. & Golyshin, P., 15 Jun 2019, In: Genes. 10, 6, 461.

Research output: Contribution to journal › Article › peer-review

Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

Chernyh, N. A., Neukirchen, S., Frolov, E. N., Sousa, F. L., Miroshnichenko, M. L., Merkel, A. Y., Pimenov, N. V., Sorokin, D. Y., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Lebedinsky, A. V., Cardoso Pereira, I. A. & Bonch-Osmolovskaya, E. A., Nov 2020, In: Nature Microbiology. 5, 11, p. 1428-+

Research output: Contribution to journal › Article › peer-review

Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

Sorokin, D. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P., Galinski, E. A., Ciordia, S., Mena, M. C., Merkel, A. Y., Wolf, Y. I., van Loosdrecht, M. C. M. & Koonin, E. V., May 2017, In: Nature Microbiology. 2, 17081 .

Research output: Contribution to journal › Article › peer-review

Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats

Sorokin, D. Y., Messina, E., Smedile, F., Roman, P., Sinninghe Damste, J. S., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Kublanov, I. V., Samarov, N. I., Toshchakov, S. V., La Cono, V. & Yakimov, M. M., 20 Jan 2017, In: ISME Journal. 11, p. 1245-1260

Research output: Contribution to journal › Article › peer-review

Determinants and prediction of esterase substrate promiscuity patterns

Martínez-Martínez, M., Coscolín, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernández, J., Bollinger, A., Thies, S., Méndez-García, C., Popovic, A., Brown, G., Chernikova, T., García-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., del Pozo, M. V., Stokke, R., Steen, I. H., Cui, H., Xu, X., Nocek, B., Alcaide, M., Disasto, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernández-Guerra, A., Glockner, F. O., Golyshina, O., Yakimov, M. M., Savchenko, A., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., Golyshin, P., Guallar, V. & Ferrer, M., 2018, In: ACS Chemical Biology. 13, 1, p. 225-234

Research output: Contribution to journal › Article › peer-review

Degradation of Hydrocarbons and Heavy Metal Reduction by Marine Bacteria in Highly Contaminated Sediments

Dell'Anno, F., Brunet, C., van Zyl, L. J., Trindade, M., Golyshin, P., Dell'Anno, A., Ianora, A. & Sansone, C., 11 Sept 2020, In: Microorganisms . 8, 9

Research output: Contribution to journal › Article › peer-review

Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data

Bargiela, R., Gertler, C., Mapelli, F., Magagnini, M., Chen, J., Daffonchio, D., Golyshin, P. & Ferrer, M., 24 Nov 2015, In: Frontiers in Microbiology. 6

Research output: Contribution to journal › Article › peer-review

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez-Guerra, A., Thambisetty, S., de la Calle, F., Golyshina V, O., Yakimov, M. M., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., McMeel, O., Calewaert, J.-B., Tonne, N., Golyshin, P. N. & Consortium, I., 1 Jan 2019, In: FEMS Microbiology Letters. 366, 1, fny285.

Research output: Contribution to journal › Article › peer-review

Cuniculiplasmataceae, their ecogenomic and metabolic patterns and interactions with ‘ARMAN’

Golyshina, O. V., Bargiela, R. & Golyshin, P. N., Jan 2019, In: Extremophiles. 23, 1, p. 1-7 7 p.

Research output: Contribution to journal › Article › peer-review

Culturable microorganisms from the earthworm digestive tract

Byzov, B. A., Nechitaylo, T. Y., Bumazhkin, B. K., Kurakov, A. V., Golyshin, P. N. & Zvyagintsev, D. G., Jun 2009, In: Microbiology. 78, 3, p. 360-368

Research output: Contribution to journal › Article › peer-review

Crude oil-induced structural shift of coastal bacterial communities of rod bay (Terra Nova Bay, Ross Sea, Antarctica) and characterization of cultured cold-adapted hydrocarbonoclastic bacteria.

Yakimov, M. M., Gentile, G., Bruni, V., Cappello, S., D'Auria, G., Golyshin, P. N. & Giuliano, L., 1 Sept 2004, In: Fems Microbiology Ecology. 49, 3, p. 419-432

Research output: Contribution to journal › Article › peer-review

Corrigendum: High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream

Distaso, M. A., Bargiela, R., Brailsford, F. L., Williams, G. B., Wright, S., Lunev, E. A., Toshchakov, S. V., Yakimov, M. M., Jones, D. L., Golyshin, P. N. & Golyshina, O. V., 29 Jan 2021, In: Frontiers in Microbiology. 12, p. 633015

Research output: Contribution to journal › Article › peer-review

Conversion of a carboxylesterase into a triacylglycerol lipase by a random mutation.

Reyes-Duarte, D., Polaina, J., Lopez-Cortes, N., Alcalde, M., Plou, F. J., Elborough, K., Ballesteros, A., Timmis, K. N., Golyshin, P. N. & Ferrer, M., 1 Nov 2005, In: Angewandte Chemie - International Edition. 44, 46, p. 7553-7557

Research output: Contribution to journal › Article › peer-review

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads

Gertler, C., Bargiela, R., Mapelli, F., Han, X. F., Chen, J. W., Hai, T., Amer, R. A., Mahjoubi, M., Malkawi, H., Magagnini, M., Cherif, A., Abdel-Fattah, Y. R., Kalogerakis, N., Daffonchio, D., Ferrer, M. & Golyshin, P. N., 1 Oct 2015, In: Microbial Ecology. 70, 3, p. 724-740

Research output: Contribution to journal › Article › peer-review

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea).

Golyshin, P., Yakimov, M. M., La Cono, V., Smedile, F., DeLuca, T., Juarez, S., Ciordia, S., Fernandez, M., Albar, J. P., Ferrer, M., Golyshin, P. N. & Giuliano, L., 1 Jun 2011, In: ISME Journal. 5, p. 945-961

Research output: Contribution to journal › Article › peer-review

Composition and dynamics of biostimulated indigenous oil-degrading microbial consortia from the Irish, North and Mediterranean Seas: a mesocosm study

Golyshin, P., Gertler, C., Näther, D. J., Cappello, S., Gerdts, G., Quilliam, R. S., Yakimov, M. M. & Golyshin, P. N., 1 Sept 2012, In: Fems Microbiology Ecology. 81, 3, p. 520-536

Research output: Contribution to journal › Article › peer-review

Combined whole-cell high-throughput functional screening for identification of new nicotinamidases/pyrazinamidases in metagenomic/polygenomic libraries

Zapata-Perez, R., Garcia-Saura, A. G., Jebbar, M., Golyshin, P. & Sanchez-Ferrer, A., Nov 2016, In: Frontiers in Microbiology. 7, 1915.

Research output: Contribution to journal › Article › peer-review