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  1. Published

    Microbial activity and nitrogen mineralization in forest mineral soils following heating: evaluation of post-fire effects.

    Choromanska, U. & DeLuca, T. H., 1 Feb 2002, In: Soil Biology and Biochemistry. 34, 2, p. 263-271

    Research output: Contribution to journal › Article › peer-review

  2. Published

    Microbial activity differentially regulates the vertical mobility of nitrogen compounds in soil

    Abaas, E., Hill, P. W., Roberts, P., Murphy, D. V. & Jones, D. L., Oct 2012, In: Soil Biology and Biochemistry. 53, p. 120-123

    Research output: Contribution to journal › Article › peer-review

  3. E-pub ahead of print

    Microbial and mineral interactions decouple litter quality from soil organic matter formation

    Elias, D. M. O., Mason, K. E., Goodall, T., Taylor, A., Zhao, P., Otero-Fariña, A., Chen, H., Peacock, C. L., Ostle, N. J., Griffiths, R. I., Chapman, P. J., Holden, J., Banwart, S., McNamara, N. P. & Whitaker, J., 20 Nov 2024, (E-pub ahead of print) In: Nature Communications. 15, 1, p. 10063 1 p.

    Research output: Contribution to journal › Article › peer-review

  4. Published

    Microbial and nutrient pollution of coastal bathing waters in Mauritius.

    Daby, D., Turner, J. R. & Jago, C. F., 1 Feb 2002, In: Environment International. 27, 7, p. 555-566

    Research output: Contribution to journal › Article › peer-review

  5. Published

    Microbial and plant uptake of free amino sugars in grassland soils

    Roberts, P. & Jones, D. L., Jun 2012, In: Soil Biology and Biochemistry. 49, p. 139-149

    Research output: Contribution to journal › Article › peer-review

  6. Published

    Microbial assimilation dynamics differs but total mineralization from added root and shoot residues is similar in agricultural Alfisols

    Xu, Y., Sun, L., Lal, R., Bol, R., Wang, Y., Gao, X., Ding, F., Liang, S., Li, S. & Wang, J., 1 Sept 2020, In: Soil Biology and Biochemistry. 148, 107901.

    Research output: Contribution to journal › Article › peer-review

  7. Microbial biodiversity and ecosystem functioning under controlled conditions and in the wild: Biodiversity, Ecosystem Functioning, and Human Wellbeing: An Ecological and Economic Perspective

    Bell, T., Gessner, M. O., Griffiths, R. I., McLaren, J. R., Morin, P. J., van der Heijden, M., van der Putten, W. H., Naeem, S. (Editor), Bunker, D. E. (Editor), Hector, A. (Editor), Loreau, M. (Editor) & Perrings, C. (Editor), Jul 2009, Biodiversity, Ecosystem Functioning, and Human Wellbeing: An Ecological and Economic . Oxford University Press USA, p. 121-133

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  8. Published

    Microbial biomass, activity, and community structure in horticultural soils under conventional and organic management strategies

    Ge, T., Hunan., C. A. O., Yuan, H., Li, B., Zhu, H., Peng, P., Li, K., Jones, D. L. & Wu, J., 30 Sept 2013, In: European Journal of Soil Biology. 58, p. 122-128

    Research output: Contribution to journal › Article › peer-review

  9. Published

    Microbial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems

    Rowe, O. F., Sanchez-Espana, J., Hallberg, K. & Johnson, D. B., 1 Jul 2007, In: Environmental Microbiology. 9, 7, p. 1761-1771

    Research output: Contribution to journal › Article › peer-review

  10. Published

    Microbial communities and interactions in low pH environments

    Johnson, D. B., 2016, Acidophiles: Life in Extremely Acidic Environments. Quatrini, R. & Johnson, D. B. (eds.). Caister Academic Press Limited, p. 121-138

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  11. Published

    Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters

    Tulloch, C. L., Bargiela, R., Williams, G. B., Chernikova, T. N., Cotterell, B. M., Wellington, E. M. H., Christie-Oleza, J., Thomas, D. N., Jones, D. L. & Golyshin, P. N., 29 Apr 2024, In: Environmental Microbiome. 19, 1, 27.

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste

    Diaby, N., Dold, B., Pfeifer, H. R., Holliger, C., Johnson, D. B. & Hallberg, K. B., 1 Feb 2007, In: Environmental Microbiology. 9, 2, p. 298-307

    Research output: Contribution to journal › Article › peer-review

  13. Published

    Microbial communities in passive remediation systems at three abandoned coal mine sites in the United Kingdom

    Falagan Rodriguez, C., Smail, I., Grail, B. & Johnson, D. B., Jul 2016, Proceedings IMWA 2016 . p. 796-803

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  14. Published

    Microbial community changes in heathland soil communities along a geographical gradient: interaction with climate change manipulations.

    Sowerby, A., Emmett, B., Beier, C., Tietema, A., Penuelas, J., Estiatre, M., Van Meeteren, M. J., Hughes, S. & Freeman, C., 1 Oct 2005, In: Soil Biology and Biochemistry. 37, 10, p. 1805-1813

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine Lake Urania (eastern Mediterranean).

    Golyshin, P., Yakimov, M. M., Giuliano, L., Cappello, S., Denaro, R. & Golyshin, P. N., 1 Apr 2007, In: Origins of Life and Evolution of Biospheres. 37, 2, p. 177-188

    Research output: Contribution to journal › Article › peer-review

  16. Published

    Microbial community of a saline mud volcano at San Biagio-Belpasso, Mt. Etna (Italy)

    Yakimov, M. M., Giuliano, L., Crisafi, E., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 May 2002, In: Environmental Microbiology. 4, 5, p. 249-256

    Research output: Contribution to journal › Article › peer-review

  17. Published

    Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA

    Golyshin, P., Yakimov, M. M., La Cono, V., La Spada, G., Bortoluzzi, G., Messina, E., Smedile, F., Arcadi, E., Borghini, M., Ferrer, M., Schmitt-Kopplin, P., Hertkorn, N., Cray, J. A., Hallsworth, J. E., Golyshin, P. N. & Giuliano, L., 1 Feb 2015, In: Environmental Microbiology. 17, 2, p. 364-382

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Microbial community succession in soil is mainly driven by carbon and nitrogen contents rather than phosphorus and sulphur contents

    Tang, S., Ma, Q., Marsden, K., Chadwick, D., Luo, Y., Kuzyakov, Y., Wu, L. & Jones, D. L., 1 May 2023, In: Soil Biology and Biochemistry. 180, 109019.

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Microbial competition for nitrogen and carbon is as intense in the subsoil as in the topsoil

    Jones, D., Magthab, E., Gleeson, D. B., Hill, P., Sanchez-Rodriguez, A. R., Roberts, P., Ge, T. & Murphy, D. V., Feb 2018, In: Soil Biology and Biochemistry. 117, p. 72-82

    Research output: Contribution to journal › Article › peer-review

  20. Published

    Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

    Golyshin, P., Gertler, C., Gerdts, G., Timmis, K. N. & Golyshin, P. N., 1 Aug 2009, In: Fems Microbiology Ecology. 69, 2, p. 288-300

    Research output: Contribution to journal › Article › peer-review

  21. Published

    Microbial contributions to climate change through carbon cycle feedbacks.

    Bardgett, R. D., Freeman, C. & Ostle, N. J., 1 Aug 2008, In: ISME Journal. 2, 8, p. 805-814

    Research output: Contribution to journal › Article › peer-review

  22. E-pub ahead of print

    Microbial degradation of bioplastic (PHBV) is limited by nutrient availability at high microplastic loadings

    Reay, M. K., Graf, M., Greenfield, L., Bargiela, R., Onyije, C., Lloyd, C. E. M., Bull, I. D., Evershed, R. P., Golyshin, P., Chadwick, D. & Jones, D. L., 29 Oct 2024, (E-pub ahead of print) In: Environmental Science: Advances.

    Research output: Contribution to journal › Article › peer-review

  23. Published

    Microbial diversity and activity are increased by compost amendment of metal-contaminated soil.

    Farrell, M., Griffith, G. W., Hobbs, P. J., Perkins, W. T. & Jones, D. L., 1 Jan 2010, In: Fems Microbiology Ecology. 71, 1, p. 94-105

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Microbial diversity and genetic response to stress conditions of extremophilic bacteria isolated from the Escondida copper mine.

    Galleguillos, P. A., Hallberg, K. B., Johnson, D. B., Donati, E. R. (Editor), Viera, M. R. (Editor), Tavani, E. L. (Editor), Giaveno, M. A. (Editor), Lavalle, T. L. (Editor) & Chiacchiarini, P. A. (Editor), 1 Jan 2009, p. 55-58.

    Research output: Contribution to conference › Paper

  25. Published

    Microbial diversity and metabolic networks in acid mine drainage habitats

    Mendez-Garcia, C., Pelaez, A. I., Mesa, V., Sanchez, J., Golyshina, O. & Ferrer, M., 29 May 2015, In: Frontiers in Microbiology. 6, p. Article Number 475

    Research output: Contribution to journal › Article › peer-review

  26. Published

    Microbial diversity dynamics during the self-acidification of dairy slurry

    Bastami, M. S., Jones, D. L. & Chadwick, D. R., 16 Jul 2021, In: Environmental Technology. 42, 16, p. 2562-2572 11 p.

    Research output: Contribution to journal › Article › peer-review

  27. Published

    Microbial ecology and biogeochemical cycling of metals in experimental wetland mesocosms.

    Coupland, K., Hallberg, K. B. & Johnson, D. B., 1 Jan 2005.

    Research output: Contribution to conference › Paper

  28. Published

    Microbial enzyme activity and stoichiometry signal the effects of agricultural intervention on nutrient cycling in peatlands

    Qin, L., Freeman, C., Jia, X., Zhang, Z., Liu, B., Zhang, S. & Jiang, M., 1 Mar 2021, In: Ecological Indicators. 122, 107242.

    Research output: Contribution to journal › Article › peer-review

  29. Published

    Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin.

    Ferrer, M., Golyshina, O. V., Chernikova, T. N., Khachane, A. N., Dos Santos, V. A., Yakimov, M. M., Timmis, K. N. & Golyshin, P. N., 1 Aug 2005, In: Chemistry and Biology. 12, 8, p. 895-904

    Research output: Contribution to journal › Article › peer-review

  30. Published

    Microbial generation of sulfuric acid from granular elemental sulfur in laboratory-scale bioreactors

    Pakostova, E. & Johnson, D. B., Dec 2019, In: Hydrometallurgy. 190, 105152.

    Research output: Contribution to journal › Article › peer-review

  31. Published

    Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation

    Yakimov, M. M., La Cono, V., Slepak, V. Z., La Spada, G., Arcadi, E., Messina, E., Borghini, M., Monticelli, L. S., Rojo, D., Barbas, C., Golyshina, O. V., Ferrer, M., Golyshin, P. N. & Giuliano, L., 19 Dec 2013, In: Scientific Reports. 3, p. 3554

    Research output: Contribution to journal › Article › peer-review

  32. Published

    Microbial metagenomes: moving forward industrial biotechnology.

    Ferrer, M., Beloqui, A. & Golyshin, P. N., 1 May 2007, In: Journal of Chemical Technology and Biotechnology. 82, 5, p. 421-423

    Research output: Contribution to journal › Article › peer-review

  33. Published

    Microbial populations in surface spoil at the abandoned Mynydd Parys copper mines.

    Bryan, C. G., Hallberg, K. B., Johnson, D. B., Jarvis, A. P. (Editor), Dudgeon, B. A. (Editor) & Younger, P. L. (Editor), 1 Jan 2004, p. 107-112.

    Research output: Contribution to conference › Paper

  34. Published

    Microbial populations of compost wetlands constructed to remediate acidic coal spoil drainage.

    Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 713-722.

    Research output: Contribution to conference › Paper

  35. Published

    Microbial populations of mineral spoils and their potential role in biomining.

    Bryan, C. B., Johnson, D. B. & Hallberg, K. B., 1 Jan 2005.

    Research output: Contribution to conference › Paper

  36. Published

    Microbial populations of tailings spoil at the São Domingos former copper mine.

    Bryan, C. G., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 677-686.

    Research output: Contribution to conference › Paper

  37. Published

    Microbial potential for denitrification in the hyperarid Atacama Desert soils

    Wu, D., Senbayram, M., Moradi, G., Moerchen, R., Knief, C., Klumpp, E., Jones, D. L., Well, R., Chen, R. & Bol, R., 1 Jun 2021, In: Soil Biology and Biochemistry. 157, 108248.

    Research output: Contribution to journal › Article › peer-review

  38. Published

    Microbial poulations in a 110 ton-scale column for the recovery of metals from black schist ores

    Hallberg, K. B., Johnson, D. B., Langwaldt, J. & Joulian, C., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 170

    Research output: Contribution to journal › Article › peer-review

  39. Published

    Microbial response time to sugar and amino acid additions to soil.

    Jones, D. L. & Murphy, D. V., 1 Aug 2007, In: Soil Biology and Biochemistry. 39, 8, p. 2178-2182

    Research output: Contribution to journal › Article › peer-review

  40. Published

    Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

    Mendez-Garcia, C., Mesa, V., Sprenger, R. R., Richter, M., Suarez Diez, M., Solano, J., Bargiela, R., Golyshina, O., Manteca, A., Ramos, J. L., Gallego, J. R., Llorente, I., Ap Martins dos Santos, V., Jensen, O. N., Pelaez, A. I., Sanchez, J. & Ferrer, M., Jun 2014, In: ISME Journal. 8, p. 1259-1274

    Research output: Contribution to journal › Article › peer-review

  41. Published

    Microbial turnover of above and belowground litter components in shrublands

    Marella, V. S., Hill, P., Jones, D. & Roberts, P., Jul 2016, In: Pedobiologia. 59, 4, p. 229-232

    Research output: Contribution to journal › Article › peer-review

  42. Published

    Microbial uptake and utlization of low molecular weight organic substrates in soil depend on carbon oxidation state

    Gunina, A., Smith, A., Jones, D. & Kuzyakov, Y., Mar 2017, In: Biogeochemistry. 133, 1, p. 89-100

    Research output: Contribution to journal › Article › peer-review

  43. Published

    Microbial uptake kinetics of dissolved organic carbon (DOC) compound groups from river water and sediments

    Brailsford, F. L., Glanville, H. C., Golyshin, P. N., Johnes, P. J., Yates, C. A. & Jones, D. L., 2 Aug 2019, In: Scientific Reports. 9, 1, 11229.

    Research output: Contribution to journal › Article › peer-review

  44. Published

    Microbial use of low molecular weight DOM in filtered and unfiltered freshwater: Role of ultra-small microorganisms and implications for water quality monitoring

    Brailsford, F., Glanville, H., Marshall, M., Golyshin, P., Jones, P. J., Yates, C. A., Owen, A. T. & Jones, D. L., 15 Nov 2017, In: Science of the Total Environment. 598, p. 377-384

    Research output: Contribution to journal › Article › peer-review

  45. Published

    Microbial utilization of low molecular weight organic carbon substrates in cultivated peats in response to warming and soil degradation

    Wen, Y., Zang, H., Freeman, B., Musarika, S., Evans, C. D., Chadwick, D. R. & Jones, D. L., Dec 2019, In: Soil Biology and Biochemistry. 139, 107629.

    Research output: Contribution to journal › Article › peer-review

  46. Published

    Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail

    Del Pozo, M. V., Fernández-Arrojo, L., Gil-Martínez, J., Montesinos, A., Chernikova, T. N., Nechitaylo, T. Y., Waliszek, A., Tortajada, M., Rojas, A., Huws, S. A., Golyshina, O., Newbold, C. M., Polaina, J., Ferrer, M. & Golyshin, P., 12 Sept 2012, In: Biotechnology for Biofuels. 5, p. 73

    Research output: Contribution to journal › Article › peer-review

  47. Published
  48. Published

    Microbiological Communities in Two Acidic Mine Pit Lakes in the Iberian Pyrite Belt (IPB), Spain

    Falagan, C., Sánchez-España, F. J. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 19-22

    Research output: Contribution to journal › Article › peer-review

  49. Published

    Microbiological and Geochemical Dynamics in Simulated-Heap Leaching of a Polymetallic Sulfide Ore.

    Wakeman, K., Auvinen, H. & Johnson, D. B., 1 Nov 2008, In: Biotechnology and Bioengineering. 101, 4, p. 739-750

    Research output: Contribution to journal › Article › peer-review

  50. Published

    Microbiological quality of chicken wings damaged on the farm or in the processing plant.

    Malpass, M. C., Williams, A. P., Jones, D. L. & Omed, H. M., 1 Jun 2010, In: Food Microbiology. 27, 4, p. 521-525

    Research output: Contribution to journal › Article › peer-review

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