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School of Environmental & Natural Sciences

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  1. Published

    Runs of homozygosity in killer whale genomes provide a global record of demographic histories

    Foote, A. D., Hooper, R., Alexander, A., Baird, R. W., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dalla Rosa, L., Davison, N. J., Durban, J. W., Esteban, R., Excoffier, L., Fordyce Martin, S. L., Forney, K. A., Gerrodette, T., Gilbert, M. T. P., Guinet, C., Hanson, M. B., Li, S., Martin, M. D., Robertson, K. M., Samarra, F. I. P., de Stephanis, R., Tavares, S. B., Tixier, P., Totterdell, J. A., Wade, P., Wolf, J. B. W., Fan, G., Zhang, Y. & Morin, P. A., Dec 2021, In: Molecular Ecology. 30, 23, p. 6162-6177 16 p.

    Research output: Contribution to journal › Article › peer-review

  2. Published

    Sympatric speciation in the genomic era

    Foote, A., Feb 2018, In: Trends in Ecology and Evolution. 33, 2, p. 85-95 11 p.

    Research output: Contribution to journal › Article › peer-review

  3. Published

    Killer whale genomes reveal a complex history of recurrent admixture and vicariance

    Foote, A., Martin, M. D., Louis, M., Pacheco, G., Robertson, K., Sinding, M.-H., Amaral, A., Baird, R., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dabin, W., Dalla Rosa, L., Davison, N. J., Durban, J., Esteban, R., Ferguson, S. H., Gerrodette, T., Guinet, C., Hanson, M. B., Hoggard, W., Matthews, C., Samarra, F., de Stephanis, R., Tavares, S., Tixier, P., Totterdell, J., Wade, P., Excoffier, L., Gilbert, M. T. P., Wolf, J. B. W. & Morin, P. A., Jul 2019, In: Molecular Ecology. 28, 14, p. 3427-3444

    Research output: Contribution to journal › Article › peer-review

  4. Published

    Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

    Fonseca, V. G., Carvalho, G. R., Nichols, B., Quince, C., Johnson, H. F., Neill, S. P., Lambshead, J. D., Thomas, W. K., Power, D. M. & Creer, S., 25 Aug 2014, In: Global Ecology and Biogeography. 23, 11, p. 1293–1302

    Research output: Contribution to journal › Article › peer-review

  5. Published

    Second-generation environmental sequencing unmasks marine metazoan biodiversity.

    Fonseca, V. G., Carvalho, G. R., Sung, W., Johnson, H. F., Power, D. M., Neill, S. P., Packer, M., Blaxter, M. L., Lambshead, J. D., Thomas, W. K. & Creer, S., 19 Oct 2010, In: Nature Communications. 1, 7, p. 98

    Research output: Contribution to journal › Article › peer-review

  6. Published

    Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses

    Fonseca, V. G., Nichols, B., Lallias, D., Quince, C., Carvalho, G. R., Power, D. M. & Creer, S., 25 Jan 2012, In: Nucleic Acids Research. 40, 9, p. e66

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach

    Fonseca, V. G., Sinninger, F., Gaspar, J. M., Quince, C., Creer, S., Power, D., Peck, L. S. & Clark, M. S., 21 Jul 2017, In: Scientific Reports. 7, 6094.

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Aβ exacerbates the neuronal dysfunction caused by human tau expression in a Drosophila model of Alzheimer's disease.

    Folwell, J., Cowan, C. M., Ubhi, K. K., Shiabh, H., Newman, T. A., Shepherd, D. & Mudher, A., 1 Jun 2010, In: Experimental Neurology. 223, 2, p. 401-409

    Research output: Contribution to journal › Article › peer-review

  9. Published

    Soil pH, Calcium Content and Bacteria as Major Factors Responsible for the Distribution of the Known Fraction of the DNA Bacteriophage Populations in Soils of Luxembourg

    Florent, P., Cauchie, H.-M., Herold, M., Jacquet, S. & Ogorzaly, L., 19 Jul 2022, In: Microorganisms . 10, 7, 1458.

    Research output: Contribution to journal › Article › peer-review

  10. Published

    Bacteriophages pass through candle-shaped porous ceramic filters: Application for the collection of viruses in soil water

    Florent, P., Cauchie, H.-M., Herold, M. & Ogorzaly, L., 1 Oct 2022, In: MicrobiologyOpen. 11, 5

    Research output: Contribution to journal › Article › peer-review

  11. Published

    A Virological Perspective on the Use of Bacteriophages as Hydrological Tracers (A review paper)

    Florent, P., Cauchie, H.-M. & Ogorzaly, L., 7 Dec 2022, In: Water. 3991.

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Iron-mineral accretion from acid mine drainage and its application in passive treatment

    Florence, K., Sapsford, D. J., Johnson, D. B., Kay, C. & Wolkersdorfer, C., 2016, In: Environmental Technology. 37, 11, p. 1428-1440

    Research output: Contribution to journal › Article › peer-review

  13. Published

    You are what your ancestors ate: retained bufadienolide resistance in the piscivorous water cobra Naja annulata (Serpentes: Elapidae)

    Fletcher, J., Malhotra, A. & Wüster, W., 1 Jul 2023, In: Herpetological Journal. 33, 3, p. 83-87 5 p.

    Research output: Contribution to journal › Article › peer-review

  14. Published

    Projected Increases in Precipitation Are Expected To Reduce Nitrogen Use Efficiency and Alter Optimal Fertilization Timings in Agriculture in the South East of England

    Fletcher, D. M., Ruiz, S., Williams, K., Petroselli, C., Walker, N., Chadwick, D., Jones, D. L. & Roose, T., 12 Aug 2022, In: ACS ES&T ENGINEERING. 2, 8, p. 1414-1424 11 p.

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Simply looking at greenery can boost mental health – new research

    Fleming, W., 11 Jun 2024, The Conversation.

    Research output: Contribution to specialist publication › Article

  16. Published

    The nature gaze: Eye‐tracking experiment reveals well‐being benefits derived from directing visual attention towards elements of nature

    Fleming, W., Rizowy, B. & Shwartz, A., Aug 2024, In: People and Nature. 6, 4, p. 1469-1485 17 p.

    Research output: Contribution to journal › Article › peer-review

  17. Published

    Connections among Puget Sound Residents’ Psychological Restoration from Natural Environments, Place Attachment, and Beliefs about Environmental Governance

    Fleming, W., Needham, M. & Biedenweg, K., Feb 2022, In: Environmental Management. 69, p. 258-270

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Measuring Spatial Associations between Environmental Health and Beliefs about Environmental Governance

    Fleming, W., Hallman, T., van den Hoek, J., Johnson, S. M. & Biedenweg, K., Dec 2022, In: Environmental Management. 70, p. 1038-1050

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Deoxynucleoside Salvage in Fission Yeast Allows Rescue of Ribonucleotide Reductase Deficiency but Not Spd1-Mediated Inhibition of Replication

    Fleck, O., Fahnøe, U., Løvschal, K. V., Gasasira Uwamahoro, M.-F., Marinova, I. N., Kragelund, B. B., Carr, A. M., Hartsuiker, E., Holmberg, C. & Nielsen, O., 25 Apr 2017, In: Genes. 8, 5, 14 p., 128.

    Research output: Contribution to journal › Article › peer-review

  20. Published

    Spd1 accumulation causes genome instability independently of ribonucleotide reductase activity but functions to protect the genome when deoxynucleotide pools are elevated

    Fleck, O., Vejrup-Hansen, R., Watson, A., Carr, A. M., Nielsen, O. & Holmberg, C., 1 Nov 2013, In: Journal of Cell Science. 126, 21, p. 4985-4994

    Research output: Contribution to journal › Article › peer-review

  21. Published

    Effectiveness of cooking to reduce Norovirus and infectious F-specific RNA bacteriophage concentrations in Mytilus edulis

    Flannery, J., Rajko-Nenow, P., Winterbourn, J. B., Malham, S. K. & Jones, D. L., 1 Aug 2014, In: Journal of Applied Microbiology. 117, 2, p. 564-571

    Research output: Contribution to journal › Article › peer-review

  22. Published

    Comparison of theoretical and measured composition of brine during salt precipitation and resulting co-crystals

    Fitzsimmons-Thoss, V. & Jones, L., 6 Jul 2018.

    Research output: Contribution to conference › Paper › peer-review

  23. Published

    Molecular characterization of omega-1: A hepatotoxic ribonuclease from Schistosoma mansoni eggs.

    Fitzsimmons, C. M., Schramm, G., Jones, F. M., Chalmers, I. W., Hoffmann, K. F., Grevelding, C. G., Wuhrer, M., Hokke, C. H., Haas, H., Doenhoff, M. J. & Dunne, D. W., 1 Nov 2005, In: Molecular and Biochemical Parasitology. 144, 1, p. 123-127

    Research output: Contribution to journal › Article › peer-review

  24. Published

    Site Specific Relationships between COVID-19 Cases and SARS-CoV-2 Viral Load in Wastewater Treatment Plant Influent

    Fitzgerald, S. F., Rossi, G., Low, A. S., McAteer, S. P., O'Keefe, B., Findlay, D., Cameron, G. J., Pollard, P., Singleton, P. T. R., Ponton, G., Singer, A. C., Farkas, K., Jones, D. L., Graham, D. W., Quintela-Baluja, M., Tait-Burkard, C., Gally, D. L., Kao, R. & Corbishley, A., 16 Nov 2021, In: Environmental Science and Technology. 55, 22, p. 15276-15286 11 p.

    Research output: Contribution to journal › Article › peer-review

  25. Published

    Modelling spatial and inter-annual variations of nitrous oxide emissions from UK cropland and grasslands using DailyDayCent

    Fitton, N., Datta, A., Cloy, J. M., Rees, R. M., Topp, C. F. E., Bell, M. J., Cardenas, L. M., Williams, J., Smith, K., Thorman, R., Watson, C. J., McGeough, K. L., Kuhnert, M., Hastings, A., Anthony, S., Chadwick, D. & Smith, P., 1 Dec 2017, In: Agriculture, Ecosystems and Environment. 250, p. 1-11

    Research output: Contribution to journal › Article › peer-review

  26. Published

    The challenge of modelling nitrogen management at the field scale: simulation and sensitivity analysis of N2O fluxes across nine experimental sites using DailyDayCente

    Fitton, N., Datta, A., Hastings, A., Kuhnert, M., Topp, C. F., Cloy, J. M., Rees, R. M., Cardenas, L. M., Williams, J. R., Smith, K., Chadwick, D. R. & Smith, P., 8 Sept 2014, In: Environmental Research Letters. 9, 9

    Research output: Contribution to journal › Article › peer-review

  27. Published

    Root exudate carbon mitigates nitrogen loss in a semi-arid soil

    Fisk, L. M., Barton, L., Jones, D. L., Glanville, H. C. & Murphy, D. V., 20 Jun 2015, In: Soil Biology and Biochemistry. 88, p. 380-389

    Research output: Contribution to journal › Article › peer-review

  28. Published

    Looking ahead to the future of GeogEd: Creating spaces of exchange between communities of practice.

    Finn, M., Hammond, L., Healy, G., Todd, J., Marvell, A., McKendrick, J. & Yorke, L., Mar 2022, In: Area. 54, 1, p. 41-51 11 p.

    Research output: Contribution to journal › Article › peer-review

  29. Published

    Variation in fine root biomass of three European tree species: beech (Fagus sylvatica L.), Norway spruce (Picea abies L. Karst.), and Scots pine (Pinus sylvestris L.).

    Finer, L., Helmisaari, H. S., Lohmus, K., Majdi, H., Brunner, I., Borja, I., Eldhuset, T., Godbold, D. L., Grebenc, T., Konopka, B., Kraigher, H., Mottonen, M. R., Ohashi, M., Oleksyn, J., Ostonen, I., Uri, V. & Vanguelova, E., 1 Nov 2007, In: Plant Biosystems. 141, 3, p. 394-405

    Research output: Contribution to journal › Article › peer-review

  30. Published

    The effect of swidden agriculture on ant communities in Madagascar.

    Finch, E., Rajoelison, E., Hamer, M., Caruso, T., Farnsworth, K., Fisher, B. & Cameron, A., 1 Jan 2022, In: Biological Conservation. 265, 109400.

    Research output: Contribution to journal › Article › peer-review

  31. Published

    The BIOMOre Project – A New Mining Concept for Extracting Metals from Deep Ore Deposits Using Biotechnology

    Fillipov, L., Izart, C., Hejny, H., Hirsch, K., Johnson, B., Kahnt, R., Marten, H. & Slabbert, W., Oct 2017, In: Mining Report. 153, 5, p. 436-445

    Research output: Contribution to journal › Article › peer-review

  32. Published

    Biodiversity for biocatalysis: A review of the α/β-hydrolase fold superfamily of esterases-lipases discovered in metagenomes

    Ferrer, M., Bargiela, R., Martínez-Martínez, M., Mir, J., Koch, R., Golyshina, O. & Golyshin, P., 1 Mar 2016, In: Biocatalysis and Biotransformation . 33, 5-6, p. 235-249

    Research output: Contribution to journal › Article › peer-review

  33. Published

    Screening metagenomic libraries for laccase activities

    Ferrer, M., Beloqui, A. & Golyshin, P. N., Aug 2010, In: Methods in Molecular Biology. 668, p. 189-202 14 p.

    Research output: Contribution to journal › Article › peer-review

  34. Published

    Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

    Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez-Guerra, A., Thambisetty, S., de la Calle, F., Golyshina V, O., Yakimov, M. M., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., McMeel, O., Calewaert, J.-B., Tonne, N., Golyshin, P. N. & Consortium, I., 1 Jan 2019, In: FEMS Microbiology Letters. 366, 1, fny285.

    Research output: Contribution to journal › Article › peer-review

  35. Published

    A novel alpha-glucosidase from the acidophilic archaeon Ferroplasma acidiphilum strain Y with high transglycosylation activity and an unusual catalytic nucleophile

    Ferrer, M., Golyshina, O. V., Plou, F. J., Timmis, K. N. & Golyshin, P. N., 15 Oct 2005, In: Biochemical Journal. 391, 2, p. 269-276 8 p.

    Research output: Contribution to journal › Article › peer-review

  36. Published

    Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends

    Ferrer, M., Martinez, M., Bargiela, R., Streit, W. R., Golyshina, O. & Golyshin, P., 1 Jan 2016, In: Microbial Biotechnology. 9, 1, p. 22-34

    Research output: Contribution to journal › Article › peer-review

  37. Published

    Chaperonins govern growth of Escherichia coli at low temperatures.

    Ferrer, M., Chernikova, T. N., Yakimov, M. M., Golyshin, P. N. & Timmis, K. N., 1 Nov 2003, In: Nature Biotechnology. 21, 11, p. 1266-1267

    Research output: Contribution to journal › Article › peer-review

  38. Published

    Functional Metagenomics Unveils a Multifunctional Glycosyl Hydrolase from the Family 43 Catalysing the Breakdown of Plant Polymers in the Calf Rumen

    Ferrer, M., Ghazi, A., Beloqui, A., Vieites, J. M., Lopez-Cortes, N., Marın-Navarro, J., Nechitaylo, T. Y., Guazzaroni, M. E., Polaina, J., Waliczek, A., Chernikova, T. N., Reva, O. N., Golyshina, O. V. & Golyshin, P. N., 25 Jun 2012, In: PLoS ONE. 7, 6, p. e38134

    Research output: Contribution to journal › Article › peer-review

  39. Published

    Metagenomics for Mining New Genetic Resources of Microbial Communities.

    Ferrer, M., Beloqui, A., Timmis, K. N. & Golyshin, P. N., 1 Jan 2009, In: Journal of Molecular Microbiology and Biotechnology. 16, 1-2, p. 109-123

    Research output: Contribution to journal › Article › peer-review

  40. Published

    Microbial metagenomes: moving forward industrial biotechnology.

    Ferrer, M., Beloqui, A. & Golyshin, P. N., 1 May 2007, In: Journal of Chemical Technology and Biotechnology. 82, 5, p. 421-423

    Research output: Contribution to journal › Article › peer-review

  41. Published

    Biochemical and structural features of a novel cyclodextrinase from cow rumen metagenome.

    Ferrer, M., Beloqui, A., Golyshina, O. V., Plou, F. J., Neef, A., Chernikova, T. N., Fernandez-Arrojo, L., Ghazi, I., Ballesteros, A., Elborough, K., Timmis, K. N. & Golyshin, P. N., 1 Jan 2007, In: Biotechnology Journal. 2, 2, p. 207-213

    Research output: Contribution to journal › Article › peer-review

  42. Published

    New Esterases from rumen.

    Ferrer, M. (Inventor), Golyshin, P. N. (Inventor), Golyshina, O. V. (Inventor), Chernikova, T. N. (Inventor), Strompl, C. (Inventor) & Timmis, K. N. (Inventor), 18 Apr 2007, Patent No. International Application WO 2006/003009 European Patent PCT/EP2005/007305.

    Research output: Patent

  43. Published

    The cellular machinery of Ferroplasma acidiphilum is iron-protein-dominated.

    Ferrer, M., Golyshina, O. V., Beloqui, A., Golyshin, P. N. & Timmis, K. N., 4 Jan 2007, In: Nature. 445, 7123, p. 91-94

    Research output: Contribution to journal › Article › peer-review

  44. Published

    Novel maltotriose esters enhance biodegradation of Aroclor 1242 by Burkholderia cepacia LB400

    Ferrer, M., Golyshin, P. N. & Timmis, K. N., 1 Aug 2003, In: World Journal of Microbiology and Biotechnology. 19, 6, p. 637-643

    Research output: Contribution to journal › Article › peer-review

  45. Published

    Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin.

    Ferrer, M., Golyshina, O. V., Chernikova, T. N., Khachane, A. N., Dos Santos, V. A., Yakimov, M. M., Timmis, K. N. & Golyshin, P. N., 1 Aug 2005, In: Chemistry and Biology. 12, 8, p. 895-904

    Research output: Contribution to journal › Article › peer-review

  46. Published

    Transgenic organisms with lower growth temperature.

    Ferrer, M. (Inventor), Golyshin, P. N. (Inventor), Chernikova, T. N. (Inventor), Timmis, K. N. (Inventor) & Yakimov, M. M. (Inventor), 28 Jun 2006, Patent No. European Patent EP1673442 B1

    Research output: Patent

  47. Published

    Cellulases from rumen.

    Ferrer, M. (Inventor), Golyshin, P. N. (Inventor), Golyshina, O. V. (Inventor), Chernikova, T. N. (Inventor), Strompl, C. (Inventor), Timmis, K. N. (Inventor), Elborough, K. (Inventor) & Jarvis, G. (Inventor), 4 Jan 2006, Patent No. EP1765999. International Patent Application WO 2006/00375 European Patent PCT/EP2005/053104.

    Research output: Patent

  48. Published

    Polypeptides with laccase activity

    Ferrer, M. (Inventor), Golyshin, P. N. (Inventor), Golyshina, O. V. (Inventor), Chernikova, T. N. (Inventor), Strompl, C. (Inventor) & Timmis, K. N. (Inventor), 28 Aug 2007, Patent No. European Patent EP1826266

    Research output: Patent

  49. Published

    Functional consequences of single:double ring transitions in chaperonins: life in the cold.

    Ferrer, M., Lunsdorf, H., Chernikova, T. N., Yakimov, M., Timmis, K. N. & Golyshin, P. N., 1 Jul 2004, In: Molecular Microbiology. 53, 1, p. 167-182

    Research output: Contribution to journal › Article › peer-review

  50. Published

    Expression of a temperature-sensitive esterase in anovel chaperone-based Escherichia coli strain.

    Ferrer, M., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 Aug 2004, In: Applied and Environmental Microbiology. 70, 8, p. 4499-4504

    Research output: Contribution to journal › Article › peer-review

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