Research Portal

Dr John Mulley

Senior Lecturer in Zoology (Molecular Ecology)

Affiliations

Links

ORCID: 0000-0002-1537-7316

Contact info

Location: Room E1, 4th floor Brambell Building

Telephone: +44 (0)1248 383492

Personal webpage: www.johnmulley.com

Twitter: @JohnMulley

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  1. Article › Research › Peer-reviewed
  2. Published

    A high-density genetic map and molecular sex-typing assay for gerbils

    Brekke, T., Mulley, J., Steele, K., Denver, M., Thom, A. & Supriya, S., Apr 2019, In: Mammalian Genome. 30, 3-4, p. 63-70 8 p.

    Research output: Contribution to journal › Article › peer-review

  3. Published

    A new chromosome-assigned Mongolian gerbil genome allows characterization of complete centromeres and a fully heterochromatic chromosome

    Brekke, T. D., Papadopulos, A. S. T., Julia, E., Fornas, O., Fu, B., Yang, F., de la Fuente, R., Page, J., Baril, T., Hayward, A. & Mulley, J., May 2023, In: Molecular Biology and Evolution. 40, 5, msad115.

    Research output: Contribution to journal › Article › peer-review

  4. Published

    A plea for standardized nomenclature of snake venom toxins

    Hargreaves, A. D. & Mulley, J. F., 27 Aug 2014, In: Toxicon. 90, p. 351-353

    Research output: Contribution to journal › Article › peer-review

  5. Published

    Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing

    Hargreaves, A. D. & Mulley, J. F., 24 Nov 2015, In: PeerJ. p. e1441

    Research output: Contribution to journal › Article › peer-review

  6. Breakup of a homeobox cluster after genome duplication in teleosts

    Mulley, J. F., Chiu, C.-H. & Holland, P. W. H., 5 Jul 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 27, p. 10369-72 4 p.

    Research output: Contribution to journal › Article › peer-review

  7. Published

    Comparative genomics: small genome, big insights

    Mulley, J. & Holland, P., 21 Oct 2004, In: Nature. 431, 7011, p. 916-7 2 p.

    Research output: Contribution to journal › Article › peer-review

  8. Published

    Comparative genomics of chondrichthyan Hoxa clusters.

    Mulley, J. F., Zhong, Y. F. & Holland, P. W., 2 Sept 2009, In: BMC Evolutionary Biology. 9, p. 218

    Research output: Contribution to journal › Article › peer-review

  9. Published

    Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

    Hargreaves, A. D., Zhou, L., Christensen, J., Marletaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Seriwaka, K., Fox, B. A., Taylor, W. R., Mulley, J., Zhang, G., Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America: PNAS. 114, 29, p. 7677–7682

    Research output: Contribution to journal › Article › peer-review

  10. Published

    Genomic organisation of the seven ParaHox genes of coelacanths

    Mulley, J. F. & Holland, P. W., 1 Sept 2014, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 322, 6, p. 352-358

    Research output: Contribution to journal › Article › peer-review

  11. Published

    Greater Loss of Female Embryos During Human Pregnancy: A Novel Mechanism

    Mulley, J. F., Nov 2019, In: BioEssays : news and reviews in molecular, cellular and developmental biology. 41, 11

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Inbred or Outbred? Genetic Diversity in Laboratory Rodent Colonies

    Brekke, T., Steele, K. & Mulley, J., 1 Feb 2018, In: G3: Genes, Genomes, Genetics. 8, 2, p. 679-686

    Research output: Contribution to journal › Article › peer-review

  13. Published

    Incubation temperature alters stripe formation and head colouration in American alligator hatchlings and is unaffected by estradiol-induced sex reversal

    Rogerson, G., Bock, S., Loera, Y., Parrott, B. & Mulley, J., 31 Mar 2023, In: Journal of Experimental Biology. 226, 6, jeb245219.

    Research output: Contribution to journal › Article › peer-review

  14. Published

    Mate today, gone tomorrow: male-on-female cannibalism in Zamenis longissimus (Laurenti, 1768) in North Wales

    Major, T., Bracegirdle, R., Gandini, A., Limia Russel, G., Pozzi, A., Morgan, R., Mulley, J. & Wüster, W., 17 Jan 2023, In: Herpetology Notes. 16, p. 51-54 4 p.

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Parallel retention of Pdx2 genes in cartilaginous fish and coelcanths.

    Mulley, J. F. & Holland, P. W., 12 May 2010, In: Molecular Biology and Evolution. 27, 10, p. 2386-2391

    Research output: Contribution to journal › Article › peer-review

  16. Published

    Report of the 2017 RSPCA/UFAW Rodent and Rabbit Welfare Group meeting

    Hawkins, P., McBride, A., Paiba, G., Rose, R., Prescott, M. J., Mulley, J., Izzard, S., Ridley, D., Kappel, S., Melotti, L. & Hubrecht, R., Oct 2018, In: Animal Technology and Welfare. 17, 2, p. 75-42

    Research output: Contribution to journal › Article › peer-review

  17. Published

    Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins

    Hargreaves, A. D., Swain, M. T., Hegarty, M. J., Logan, D. W. & Mulley, J. F., 30 Jul 2014, In: Genome Biology and Evolution. 6, 8, p. 2088-2095

    Research output: Contribution to journal › Article › peer-review

  18. Published

    Runaway GC evolution in gerbil genomes

    Parcana, R., Hargreaves, A. D., Mulley, J. & Holland, P. W. H., 1 Aug 2020, In: Molecular Biology and Evolution. 37, 8, p. 2197-2210 msaa072.

    Research output: Contribution to journal › Article › peer-review

  19. Published

    Shed skin as a source of DNA for genotyping-by-sequencing (GBS) in reptiles

    Brekke, T. D., Shier, L., Hegarty, M. J. & Mulley, J., Sept 2023, In: Conservation Genetics Resources. 15, 3, p. 117-124 8 p.

    Research output: Contribution to journal › Article › peer-review

  20. Published

    Testing the Toxicofera: comparative reptile transcriptomics casts doubt on the single, early evolution of the reptile venom system

    Hargreaves, A. D., Swain, M. T., Logan, D. W. & Mulley, J. F., 17 Oct 2014, In: Toxicon. 92, p. 140-156

    Research output: Contribution to journal › Article › peer-review

  21. Published

    The genome of Roselle's flesh fly Sarcophaga (Helicophagella) rosellei (Böttcher, 1912)

    Falk, S. & Mulley, J., 31 Jan 2023, In: Wellcome Open Research . 8, 43, p. 43

    Research output: Contribution to journal › Article › peer-review

  22. Published

    The genome sequence of Ashworth’s Rustic, Xestia ashworthii (Doubleday, 1855)

    Mulley, J., Lees, D., programme, W. S. I. T. O. L. & Consortium, D. T. O. L., 20 Dec 2023, In: Wellcome Open Research . 8, 578

    Research output: Contribution to journal › Article › peer-review

  23. Published

    The genome sequence of the Birch Marble, Apotomis betuletana (Haworth, 1811)

    Mulley, J. & Boyes, D., 9 Feb 2023, In: Wellcome Open Research . 8, p. 66

    Research output: Contribution to journal › Article › peer-review

  24. Published

    The genome sequence of the Common Pug, Eupithecia vulgata (Haworth, 1809)

    Boyes, D., Mulley, J. F. & Consortium, D. T. O. L., 23 Mar 2023, In: Wellcome Open Research. 8, 129, p. 129 1 p.

    Research output: Contribution to journal › Article › peer-review

  25. Published

    The genome sequence of the Dark Arches Apamea monoglypha (Hufnagel, 1766)

    Boyes, D. & Mulley, J., 8 Feb 2023, In: Wellcome Open Research . 8, 63.

    Research output: Contribution to journal › Article › peer-review

  26. Published

    The genome sequence of the Riband Wave, Idaea aversata (Linnaeus, 1758)

    Boyes, D. & Mulley, J., 31 Jan 2023, In: Wellcome Open Research . 8, 45

    Research output: Contribution to journal › Article › peer-review

  27. Published

    The genome sequence of the Six-striped Rustic, Xestia sexstrigata (Haworth, 1809)

    Boyes, D., Mulley, J., collective, D. T. O. L. B. & programme, W. S. I. T. O. L., 8 Sept 2023, In: Wellcome Open Research . 8, 399

    Research output: Contribution to journal › Article › peer-review

  28. Published

    The genome sequence of the Small Emerald, Hemistola chrysoprasaria (Esper, 1795)’

    Boyes, D., Mulley, J., collective, D. T. O. L. B. & programme, W. S. I. T. O. L., 12 Oct 2023, In: Wellcome Open Research . 8, 441

    Research output: Contribution to journal › Article › peer-review

  29. Published

    The genome sequence of the Tawny Mining Bee, Andrena fulva (Müller, 1766)

    Crowley, L. M., Mulley, J. F., Lab, U. O. O. A. W. W. G. A., collective, D. T. O. L. B., programme, W. S. I. T. O. L., collective, W. S. I. S. O. D. P., collective, T. O. L. C. I. & Consortium, D. T. O. L., 21 Jun 2023, In: Wellcome Open Research. 8, 258

    Research output: Contribution to journal › Article › peer-review

  30. Published

    The genome sequence of the bluish flesh fly, Sarcophaga (Robineauella) caerulescens (Zetterstedt, 1838)

    Falk, S. & Mulley, J., 12 Jan 2023, In: Wellcome Open Research . 8, 17

    Research output: Contribution to journal › Article › peer-review

  31. Published

    The genome sequence of the lesser worm flesh fly, Sarcophaga ( Sarcophaga) subvicina (Baranov, 1937).

    Falk, S. & Mulley, J., 8 Feb 2023, In: Wellcome Open Research . 8, 65, p. 65

    Research output: Contribution to journal › Article › peer-review

  32. Published

    The genome sequence of the short-fringed mining bee, Andrena dorsata (Kirby, 1802)

    Falk, S., Mulley, J. F. & Consortium, D. T. O. L., 30 Aug 2023, In: Wellcome Open Research. 8, 373

    Research output: Contribution to journal › Article › peer-review

  33. Published

    The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

    Braasch, I., Gehrke, A. R., Smith, J. J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A. M., Campbell, M. S., Barrell, D., Martin, K. J., Mulley, J. F., Ravi, V., Lee, A. P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F. E., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M., Aken, B., Yandell, M., Schneider, I., Yoder, J. A., Volff, J., Meyer, A., Amemiya, C. T., Venkatesh, B., Holland, P. W., Guiguen, Y., Bobe, J., Shubin, N. H., Di Palma, F., Alföldi, J., Lindblad-Toh, K. & Postlethwait, J. H., 7 Mar 2016, In: Nature Genetics.

    Research output: Contribution to journal › Article › peer-review

  34. Published

    Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function

    Mulley, J. F., Hargreaves, A. D., Hegarty, M. J., Heller, R. S. & Swain, M. T., 6 Dec 2014, In: BMC Genomics. 15, 1074

    Research output: Contribution to journal › Article › peer-review

  35. Published

    Trinucleotide microsatellite loci for the peppered moth (Biston betularia)

    Daly, D., Waltham, K., Mulley, J., Watts, P., Rosin, A., Kemp, S. & Saccheri, I., Jun 2004, In: Molecular Ecology Notes. 4, 2, p. 179-181

    Research output: Contribution to journal › Article › peer-review

  36. Published

    When one phenotype is not enough: divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species

    Zancolli, G., Calvete, J. J., Cardwell, M. D., Greene, H. W., Hayes, W. K., Hegarty, M. J., Herrmann, H.-W., Holycross, A. T., Lannutti, D. I., Mulley, J. F., Sanz, L., Travis, Z. D., Whorley, J. R., Wuster, C. E. & Wuster, W., 13 Mar 2019, In: Proceedings of the Royal Society B: Biological Sciences. 286, 1898, p. 20182735

    Research output: Contribution to journal › Article › peer-review

  37. Chapter › Research › Not peer-reviewed
  38. Published

    A critique of the toxicoferan hypothesis

    Hargreaves, A. D., Tucker, A. S., Mulley, J. F., Gopalakrishnakone, P. (Editor) & Malhotra, M. (Editor), 8 Aug 2015, Evolution of Venomous Animals and Their Toxins: Toxicology. Springer Netherlands, p. 1-15

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  39. Poster › Research › Peer-reviewed
  40. Published

    Are locomotive styles in primates a driving force behind intra- and interspecies variation in the vertebral column?

    Payne, M., Winder, I. C. & Mulley, J., 18 Dec 2019.

    Research output: Contribution to conference › Poster › peer-review

  41. Abstract › Research › Peer-reviewed
  42. Published
  43. Article › Research
  44. Published

    The genome sequence of the hawthorn shieldbug, Acanthosoma haemorrhoidale (Linnaeus, 1758)

    Crowley, L. M. & Mulley, J., 5 Jul 2022, Wellcome Open Research , 7, 178, p. 178 1 p.

    Research output: Contribution to specialist publication › Article

  45. Review article › Research › Peer-reviewed
  46. Published

    ParaHox cluster evolution--hagfish and beyond

    Furlong, R. F. & Mulley, J. F., 25 Oct 2008, In: Zoological Science. 25, 10, p. 955-9 5 p.

    Research output: Contribution to journal › Review article › peer-review

  47. Published

    Regulation of posterior Hox genes by sex steroids explains vertebral variation in inbred mouse strains

    Mulley, J., Apr 2022, In: Journal of Anatomy. 240, 4, p. 735-745 11 p.

    Research output: Contribution to journal › Review article › peer-review

  48. Preprint › Research
  49. Published

    A reliance on human habitats is key to the success of an introduced predatory reptile

    Major, T., Jeffrey, L., Limia Russel, G., Bracegirdle, R., Gandini, A., Morgan, R., Marshall, B. M., Mulley, J. & Wüster, W., 3 Sept 2024, BioRxiv, 29 p.

    Research output: Working paper › Preprint

  50. Published

    The genome sequence of Philonthus cognatus (Stephens, 1832) (Coleoptera, Staphylinidae), a rove beetle.

    Crowley, L. M., Telfer, M., Geiser, M. & Mulley, J., 13 Apr 2023, Wellcome Open research, p. 169, (Wellcome open research).

    Research output: Working paper › Preprint

  51. Published

    The genome sequence of the variegated flesh fly, Sarcophaga variegata (Scopoli, 1763)

    Falk, S. & Mulley, J., 2 Jun 2023, Wellcome Open research, p. 234, (Wellcome open research).

    Research output: Working paper › Preprint