Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

Research output: Contribution to journal › Article › peer-review

Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

Golyshina, O., Kublanov, I. V., Hai, T., Korzhenkov, A. A., Lunsdorf, H., Nechitaylo, T. Y., Toshchakov, S. V. & Golyshin, P., Dec 2016, In: Scientific Reports. 6, 39034.

Research output: Contribution to journal › Article › peer-review

“ARMAN” archaea depend on association with euryarchaeal host in culture and in situ

Golyshina, O., Toshchakov, S. V., Makarova, K. S., Gavrilov, S. N., Korzhenkov, A. A., La Cono, V., Arcadi, E., Nechitaylo, T. Y., Ferrer, M., Kublanov, I. V., Wolf, Y. I., Yakimov, M. M. & Golyshin, P., 2017, In: Nature Communications. 8, 60.

Research output: Contribution to journal › Article › peer-review

The novel extremely acidophilic, cell-wall-deficient archaeon Cuniculiplasma divulgatum gen. nov., sp. nov. represents a new family, Cuniculiplasmataceae fam. nov., of the order Thermoplasmatales

Golyshina, O., Lünsdorf, H., Kublanov, I. V., Goldenstein, N. I., Hinrichs, K.-U. & Golyshin, P., Jan 2016, In: International Journal of Systematic and Evolutionary Microbiology. 66, 1, p. 332-340

Research output: Contribution to journal › Article › peer-review

The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria

Golyshina, O., Golyshin, P., Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glockner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M. & Cambon-Bonavita, M. A., 1 Sept 2014, In: Environmental Microbiology. 16, 9, p. 2723-2738

Research output: Contribution to journal › Article › peer-review

Increasing concentration of pure micro- and macro-LDPE and PP plastic negatively affect crop biomass, nutrient cycling, and microbial biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Williams, G., Onyije, C., Lloyd, C. E. M., Bull, I. D., Evershed, R. P., Golyshin, P., Chadwick, D. & Jones, D. L., 15 Sept 2023, In: Journal of Hazardous Materials. 458, p. 131932

Research output: Contribution to journal › Article › peer-review

Field-based assessment of the effect of conventional and biodegradable plastic mulch film on nitrogen partitioning, soil microbial diversity, and maize biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Golyshin, P., Evershed, R. P., Lloyd, C. E. M., Williams, G., Chadwick, D. & Jones, D. L., 1 Oct 2024, In: Applied Soil Ecology. 202, 105595.

Research output: Contribution to journal › Article › peer-review

Field response of N2O emissions, microbial communities, soil biochemical processes and winter barley growth to the addition of conventional and biodegradable microplastics

Greenfield, L. M., Graf, M., Rengaraj, S., Bargiela, R., Williams, G., Golyshin, P. N., Chadwick, D. R. & Jones, D. L., 15 Sept 2022, In: Agriculture, Ecosystems and Environment. 336, 108023.

Research output: Contribution to journal › Article › peer-review

Protein expression in the obligate hydrocarbon‐degrading psychrophile Oleispira antarctica RB‐8 during alkane degradation and cold tolerance

Gregson, B. H., Metodieva, G., Metodiev, M. V., Golyshin, P. & McKew, B. A., May 2020, In: Environmental Microbiology. 22, 5, p. 1870-1883

Research output: Contribution to journal › Article › peer-review

Metagenomics as a new technological tool to gain scientific knowledge.

Guazzaroni, M. E., Beloqui, A., Golyshin, P. N. & Ferrer, M., 1 Jun 2009, In: World Journal of Microbiology and Biotechnology. 25, 6, p. 945-954

Research output: Contribution to journal › Article › peer-review

The environmental and biosecurity characteristics of livestock carcass disposal methods: a review.

Gwyther, C. L., Williams, A. P., Golyshin, P. N., Edwards-Jones, G. & Jones, D. L., 1 Apr 2011, In: Waste Management. 31, 4, p. 767-778

Research output: Contribution to journal › Article › peer-review

Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

Research output: Contribution to journal › Article › peer-review

Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters

Hajighasemi, M., Tchigvintsev, A., Nocek, B., Flick, R., Popovic, A., Hai, T., Khusnutdinova, A. N., Brown, G., Xu, X., Cui, H., Anstett, J., Chernikova, T., Bruls, T., Le Paslier, D., Yakimov, M. M., Joachimiak, A., Golyshina, O., Savchenko, A., Golyshin, P., Edwards, E. A. & Yakunin, A. F., 6 Nov 2018, In: Environmental Science and Technology. 52, 21, p. 12388-12401

Research output: Contribution to journal › Article › peer-review

Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases

Hajighasemi, M., Nocek, B. P., Tchigvintsev, A., Brown, G., Flick, R., Xu, X., Cui, H., Hai, T., Joachimiak, A., Golyshin, P., Savchenko, A., Edwards, E. A. & Yakunin, A. F., 18 Apr 2016, In: Biomacromolecules. 17, 6, p. 2027-2039

Research output: Contribution to journal › Article › peer-review

Reaction of microorganisms to the digestive fluid of earthworms.

Khomyakov, N. V., Kharin, S. A., Nechitailo, T. Y., Golyshin, P. N., Kurakov, A. V., Byzov, B. A. & Zvyagintsev, D. G., 1 Jan 2007, In: Microbiology. 76, 1, p. 45-54

Research output: Contribution to journal › Article › peer-review

Moderately thermostable GH1 β-glucosidases from hyperacidophilic archaeon Cuniculiplasma divulgatum S5

Khusnutdinova, A., Hai, T., Devlekar, S., Distaso, M., Kublanov, I. V., Skarina, T., Stogios, P., Savchenko, A., Ferrer, M., Golyshina, O., Yakunin, A. & Golyshin, P., Sept 2024, In: Fems Microbiology Ecology. 100, 9, fiae114.

Research output: Contribution to journal › Article › peer-review

Characterization of a chitinolytic enzyme from Serratia sp KCK isolated from kimchi juice.

Kim, H. S., Timmis, K. N. & Golyshin, P. N., 1 Jul 2007, In: Applied Microbiology and Biotechnology. 75, 6, p. 1275-1283

Research output: Contribution to journal › Article › peer-review

Members of the Uncultured Taxon OP1 (''Acetothermia'') Predominate in the Microbial Community of an Alkaline Hot Spring at East-Tuvinian Upland

Korzhenkov, A. A., Teplyuk, A. V., Lebedinsky, A. V., Khvashchevskaya, A. A., Kopylova, Y. G., Arakchaa, K. D., Golyshin, P. N., Lunev, E. A., Golyshina, O. V., Kublanov, I. V., Toshchakov, S. V. & Gavrilov, S. N., 2018, In: Microbiology. 87, 6, p. 783-795 13 p.

Research output: Contribution to journal › Article › peer-review

Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity

Korzhenkov, A. A., Toshchakov, S. V., Bargiela, R., Gibbard, H., Ferrer, M., Teplyuk, A. V., Jones, D. L., Kublanov, I. V., Golyshin, P. & Golyshina, O., 28 Jan 2019, In: Microbiome. 7, 1, 11.

Research output: Contribution to journal › Article › peer-review

Chemolithotrophic Microorganisms and Microbial Community from the Desert Soil as Candidates for the Phobos-Grunt Space Return Mission

Kotsyurbenko, O. R., Duplex, O. N. D., Roey, A., Golyshina, O. N., Golyshin, P. N. & Vorobyova, E. A., Dec 2012, In: Paleontological Journal. 46, 9, p. 1075-1076

Research output: Contribution to journal › Meeting Abstract › peer-review

Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.

Research output: Contribution to journal › Article › peer-review

Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides

La Cono, V., Messina, E., Rohde, M., Arcadi, E., Ciordia, S., Crisafi, F., Denaro, R., Ferrer, M., Giuliano, L., Golyshin, P., Golyshina, O., Hallsworth, J. E., La Spada, G., Mena, M. C., Merkel, A. Y., Shevchenko, M. A., Smedile, F., Sorokin, D. Y., Toshchakov, S. V. & Yakimov, M. M., 18 Aug 2020, In: Proceedings of the National Academy of Sciences of the USA. 117, 33, p. 20223-20234 12 p.

Research output: Contribution to journal › Article › peer-review

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

La Cono, V., Messina, E., Reva, O., Smedile, F., La Spada, G., Crisafi, F., Marturano, L., Miguez, N., Ferrer, M., Selivanova, E. A., Golyshina, O., Golyshin, P., Rohde, M., Krupovic, M., Merkel, A. Y., Sorokin, D. Y., Hallsworth, J. E. & Yakimov, M., Sept 2023, In: Microbial Biotechnology. 16, 9, p. 1803-1822 20 p.

Research output: Contribution to journal › Article › peer-review

Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica

Lemak, S., Tchigvintsev, A., Petit, P., Flick, R., Singer, A. U., Brown, G., Evdokimova, E., Egorova, O., Gonzalez, C. F., Chernikova, T. N., Yakimov, M. M., Kube, M., Reinhardt, R., Golyshin, P. N., Savchenko, A. & Yakunin, A. F., 15 Jul 2012, In: Biochemical Journal. 445, 2, p. 193-203

Research output: Contribution to journal › Article › peer-review

Identification of an Amylomaltase from the Halophilic Archaeon Haloquadratum walsbyi by Functional Metagenomics: Structural and Functional Insights

Leoni, C., Manzari, C., Hai, T., Golyshin, P., Pesole, G., Volpicella, M. & Ceci, L. R., 7 Jan 2022, In: Life. 12, 1

Research output: Contribution to journal › Article › peer-review

Catalytic role of conserved HQGE motif in the CE6 carbohydrate esterase family.

Lopez-Cortes, N., Reyes-Duarte, D., Beloqui, A., Polaina, J., Ghazi, I., Golyshina, O. V., Ballesteros, A., Golyshin, P. N. & Ferrer, M., 2 Oct 2007, In: Febs Letters. 581, 24, p. 4657-4662

Research output: Contribution to journal › Article › peer-review

Polyesterase activity is widespread in the family IV carboxylesterases from bacteria

Ma, H., Khusnutdinova, A. N., Lemak, S., Chernikova, T. N., Golyshina, O. V., Almendral, D., Ferrer, M., Golyshin, P. N. & Yakunin, A. F., 5 Jan 2025, In: Journal of Hazardous Materials. 481, p. 136540

Research output: Contribution to journal › Article › peer-review

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Marasco, R., Fusi, M., Coscolín, C., Borozzi, A., Almendral, D., Bargiela, R., Gohlke neé Nutschel, C., Dittrich, J., Gohlke, H., Matesanz, R., Sanchez-Carrillo, S., Mapelli, F., Chernikova, T., Golyshin, P., Ferrer, M. & Daffonchio, D., 24 Feb 2023, In: Nature Communications. 14, 1, 1045.

Research output: Contribution to journal › Article › peer-review

Determinants and prediction of esterase substrate promiscuity patterns

Martínez-Martínez, M., Coscolín, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernández, J., Bollinger, A., Thies, S., Méndez-García, C., Popovic, A., Brown, G., Chernikova, T., García-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., del Pozo, M. V., Stokke, R., Steen, I. H., Cui, H., Xu, X., Nocek, B., Alcaide, M., Disasto, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernández-Guerra, A., Glockner, F. O., Golyshina, O., Yakimov, M. M., Savchenko, A., Jaeger, K.-E., Yakunin, A. F., Streit, W. R., Golyshin, P., Guallar, V. & Ferrer, M., 2018, In: ACS Chemical Biology. 13, 1, p. 225-234

Research output: Contribution to journal › Article › peer-review

Proteogenomic Analysis of Epibacterium Mobile BBCC367, a Relevant Marine Bacterium Isolated From the South Pacific Ocean

Matallana-Surget, S., Werner, J., Wattiez, R., Lebaron, K., Intertaglia, L., Regan, C., Morris, J., Teeling, H., Ferrer, M., Golyshin, P., Gerogiorgis, D., Reilly, S. I. & Lebaron, P., Dec 2018, In: Frontiers in Microbiology. 9, 3125.

Research output: Contribution to journal › Article › peer-review

Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13

Research output: Contribution to journal › Article › peer-review

Enzymes for consumer products to achieve climate neutrality

Molina-Espeja, P., Sanz-Aparicio, J., Golyshin, P., Robles-Martin, A., Guallar, V., Beltrametti, F., Muller, M., Yakimov, M., Modregger, J., van Logchem, M., Corvini, P., Shahgaldian, P., Degering, C., Wieland, S., Timm, A., de Carvalho, C. C. C. R., Re, I., Daniotti, S., Thies, S., Jaeger, K.-E., Chow, J., Streit, W. R., Lottenbach, R., Rosch, R., Ansari, N. & Ferrer, M., 29 Apr 2023, In: Oxford Open Climate Change. 3, 1, kgad003.

Research output: Contribution to journal › Review article › peer-review

A novel platelet-activating factor acetylhydrolase discovered in a metagenome from the earthworm-associated microbial community

Navarro-Fernández, J., Nechitaylo, T. Y., Guerrero, J. A., Golyshina, O. V., García-Carmona, F., Sánchez-Ferrer, A. & Golyshin, P. N., 1 Nov 2011, In: Environmental Microbiology. 13, 11, p. 3036-3046

Research output: Contribution to journal › Article › peer-review

'Candidatus Lumbricincola', a novel lineage of uncultured Mollicutes from earthworms of family Lumbricidae.

Nechitaylo, T. Y., Timmis, K. N. & Golyshin, P. N., 1 Apr 2009, In: Environmental Microbiology. 11, 4, p. 1016-1026

Research output: Contribution to journal › Article › peer-review

Effect of the earthworms lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo, T. Y., Yakimov, M. M., Godinho, M., Timmis, K. N., Belogolova, E., Byzov, B. A., Kurakov, A. V., Jones, D. L. & Golyshin, P. N., 1 Apr 2010, In: Microbial Ecology. 59, 3, p. 574-587

Research output: Contribution to journal › Article › peer-review

The aerobic dechlorination activities of two bacterial species isolated from a refuse dumpsite in Nigeria.

Olaniran, A. O., Okoh, A. I., Ajisebutu, S., Golyshin, P. N. & Babalola, G. O., 1 Mar 2002, In: International Microbiology. 5, 1, p. 21-24

Research output: Contribution to journal › Article › peer-review

Evaluating agar-plating and dilution-to-extinction isolation methods for generating oak-associated microbial culture collections

Ordonez Ordonez, A., Hussain, U., Cambon, M., Golyshin, P., Downie, J. & McDonald, J., 11 Feb 2025, In: ISME Communications. 5, 1, ycaf019.

Research output: Contribution to journal › Article › peer-review

A salt lake extremophile, Paracoccus bogoriensis sp nov., efficiently produces xanthophyll carotenoids

Osanjo, G. O., Muthike, E. W., Tsuma, L., Okoth, M. W., Bulimo, W. D., Luensdorf, H., Abraham, W.-R., Dion, M., Timmis, K. N., Golyshin, P. N. & Mulaa, F. J., Aug 2009, In: African Journal of Microbiology Research. 3, 8, p. 426-433

Research output: Contribution to journal › Article › peer-review

Buwchitin: A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis

Oyama, L. B., Crochet, J.-A., Edwards, J. E., Girdwood, S. E., Cookson, A. R., Fernandez-Fuentes, N., Hilpert, K., Golyshin, P., Golyshina, O., Prive, F., Hess, M., Mantovani, H. C., Creevey, C. J. & Huws, S. A., 12 Jul 2017, In: Frontiers in Chemistry.

Research output: Contribution to journal › Article › peer-review

Antibacterial Activity and Mechanism of Action of a novel Antimicrobial Peptide Palg1 and its potential against Enterococcus Faecalis Infection

Oyama, L., Crochet, J.-A., Girdwood, S., Cookson, A., Prive, F., Fernandez-Fuentes, N., Edwards, J., Mikut, R., Hilpert, K., Golyshin, P., Golyshina, O., Creevey, C. & Huws, S., Sept 2016, In: Journal of Peptide Science. 22, S2, p. S188-S188

Research output: Contribution to journal › Meeting Abstract › peer-review

The rumen microbiome: an underexplored resource for novel antimicrobial discovery

Oyama, L. B., Girdwood, S. E., Cookson, A. R., Fernanadez-Fuentes, N., Prive, F., Vallin, H. E., Wilkinson, T. J., Golyshin, P., Golyshina, O., Mikut, R., Hilpert, K., Richards, J., Wootton, M., Edwards, J. E., Maresca, M., Perrier, J., Lundy, F. T., Luo, Y., Zhou, M., Hess, M., Mantovani, H. C., Creevey, C. J. & Huws, S. A., 1 Dec 2017, In: NPJ Biofilms and Microbiomes. 3, 33 .

Research output: Contribution to journal › Article › peer-review

Genomic and mechanistic insights into the biodegradation of organic pollutants.

Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224

Research output: Contribution to journal › Article › peer-review

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

Placido, A., Hai, T., Ferrer, M., Chernikova, T. N., Distaso, M. A., Armstrong, D., Yakunin, A. F., Toshchakov, S. V., Yakimov, M. M., Kublanov, I. V., Golyshina, O., Pesole, G., Ceci, L. R. & Golyshin, P., 1 Dec 2015, In: Applied Microbiology and Biotechnology. 99, 23, p. 10031-10046

Research output: Contribution to journal › Article › peer-review

Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families

Popovic, A., Hai, T., Tchigvintsev, A., Hajighasemi, M., Nocek, B., Khusnutdinova, A. N., Brown, G., Glinos, J., Flick, R., Skarina, T., Chernikova, T., Yim, V., Bruls, T., Le Paslier, D., Yakimov, M. M., Joachimiak, A., Ferrer, M., Golyshina, O., Savchenko, A., Golyshin, P. & Yakunin, A. F., Mar 2017, In: Scientific Reports. 7, 44103, 44103.

Research output: Contribution to journal › Article › peer-review

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems

Potter, C., Freeman, C., Golyshin, P., Ackerman, G., Fenner, N., McDonald, J., Ehbair, A., Jones, T., Murphy, L. & Creer, S., Sept 2017, In: Scientific Reports. 7, 11314.

Research output: Contribution to journal › Article › peer-review

Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome

Prive, F., Newbold, C. J., Kaderbhai, N. N., Girdwood, S. G., Golyshina, O. V., Golyshin, P. N., Scollan, N. D. & Huws, S. A., 11 Jan 2015, In: Applied Microbiology and Biotechnology. 99, 13, p. 5475-5485

Research output: Contribution to journal › Article › peer-review

Structural and functional characterization of a ruminal β-glycosidase defines a novel subfamily of glycosyl hydrolase family 3 with permuted domain topology

Ramirez-Escudero, M., del Pozo, M. V., Marin-Navarro, J., Gonzalez, B., Golyshin, P., Polaina, J., Ferrer, M. & Sanz-Aparico, J., 11 Nov 2016, In: Journal of Biological Chemistry. 291, p. 24200-24214

Research output: Contribution to journal › Article › peer-review