Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

Sorokin, D. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P., Galinski, E. A., Ciordia, S., Mena, M. C., Merkel, A. Y., Wolf, Y. I., van Loosdrecht, M. C. M. & Koonin, E. V., May 2017, In: Nature Microbiology. 2, 17081 .

Research output: Contribution to journal › Article › peer-review

Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

Chernyh, N. A., Neukirchen, S., Frolov, E. N., Sousa, F. L., Miroshnichenko, M. L., Merkel, A. Y., Pimenov, N. V., Sorokin, D. Y., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P., Lebedinsky, A. V., Cardoso Pereira, I. A. & Bonch-Osmolovskaya, E. A., Nov 2020, In: Nature Microbiology. 5, 11, p. 1428-+

Research output: Contribution to journal › Article › peer-review

Diversity of “Ca. Micrarchaeota” in two distinct types of acidic environments and their associations with Thermoplasmatales

Golyshina, O., Bargiela, R., Toshchakov, S. V., Chernyh, N. A., Ramayah, S., Korzhenkov, A. A., Kublanov, I. V. & Golyshin, P., 15 Jun 2019, In: Genes. 10, 6, 461.

Research output: Contribution to journal › Article › peer-review

Diversity of facultatively anaerobic microscopic mycelial fungi in soils.

Golyshin, P., Kurakov, A. V., Lavrent'ev, R. B., Nechitailo, T. Y., Golyshin, P. N. & Zvyagintsev, D. G., 1 Jan 2008, In: Microbiology. 77, 1, p. 90-98

Research output: Contribution to journal › Article › peer-review

Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species.

Beloqui, A., Nechitaylo, T. Y., Lopez-Cortes, N., Ghazi, A., Guazzaroni, M. E., Polaina, J., Strittmatter, A. W., Reva, O., Waliczek, A., Yakimov, M. M., Golyshina, O. V., Ferrer, M. & Golyshin, P. N., 1 Sept 2010, In: Applied and Environmental Microbiology. 76, 17, p. 5934-5946

Research output: Contribution to journal › Article › peer-review

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

Placido, A., Hai, T., Ferrer, M., Chernikova, T. N., Distaso, M. A., Armstrong, D., Yakunin, A. F., Toshchakov, S. V., Yakimov, M. M., Kublanov, I. V., Golyshina, O., Pesole, G., Ceci, L. R. & Golyshin, P., 1 Dec 2015, In: Applied Microbiology and Biotechnology. 99, 23, p. 10031-10046

Research output: Contribution to journal › Article › peer-review

Dve formy vnekletochnoĭ nizkomolekuliarnoĭ ribonukleazy Bacillus sp. BCF 247. Vydelenie i kharakteristika belka

Dement'ev, A. A., Golyshin, P. N., Riabchenko, N. F., Pustobaev, V. N. & Shliapnikov, S. V., Aug 1993, In: Biokhimiia (Moscow, Russia). 58, 8, p. 1258-65 8 p.

Research output: Contribution to journal › Article › peer-review

Effect of the earthworms lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil.

Nechitaylo, T. Y., Yakimov, M. M., Godinho, M., Timmis, K. N., Belogolova, E., Byzov, B. A., Kurakov, A. V., Jones, D. L. & Golyshin, P. N., 1 Apr 2010, In: Microbial Ecology. 59, 3, p. 574-587

Research output: Contribution to journal › Article › peer-review

Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation

Golyshin, P., Genovese, M., Crisafi, F., Denaro, R., Cappello, S., Russo, D., Calogero, R., Santisi, S., Catalfamo, M., Modica, A., Smedile, F., Genovese, L., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., 14 Apr 2014, In: Frontiers in Microbiology.

Research output: Contribution to journal › Article › peer-review

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

Sorokin, D. Y., Kublanov, I. V., Gavrilov, S. N., Rojo, D., Roman, P., Golyshin, P., Slepak, V. Z., Smedile, F., Ferrer, M., Messina, E., La Cono, V. & Yakimov, M. M., Jan 2016, In: ISME Journal. 10, p. 240-252

Research output: Contribution to journal › Article › peer-review

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Marasco, R., Fusi, M., Coscolín, C., Borozzi, A., Almendral, D., Bargiela, R., Gohlke neé Nutschel, C., Dittrich, J., Gohlke, H., Matesanz, R., Sanchez-Carrillo, S., Mapelli, F., Chernikova, T., Golyshin, P., Ferrer, M. & Daffonchio, D., 24 Feb 2023, In: Nature Communications. 14, 1, 1045.

Research output: Contribution to journal › Article › peer-review

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends

Ferrer, M., Martinez, M., Bargiela, R., Streit, W. R., Golyshina, O. & Golyshin, P., 1 Jan 2016, In: Microbial Biotechnology. 9, 1, p. 22-34

Research output: Contribution to journal › Article › peer-review

Evolutionary patterns of archaea predominant in acidic environment

Bargiela, R., Korzhenkov, A. A., McIntosh, O., Toshchakov, S. V., Yakimov, M., Golyshin, P. & Golyshina, O., 18 Jul 2023, In: Environmental Microbiome. 18, 1, 61.

Research output: Contribution to journal › Article › peer-review

Expression of a temperature-sensitive esterase in anovel chaperone-based Escherichia coli strain.

Ferrer, M., Chernikova, T. N., Timmis, K. N. & Golyshin, P. N., 1 Aug 2004, In: Applied and Environmental Microbiology. 70, 8, p. 4499-4504

Research output: Contribution to journal › Article › peer-review

Fate of pathogens in a simulated bioreduction system for livestock carcasses

Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G. & Williams, A. P., 1 May 2012, In: Waste Management. 32, 5, p. 933-938

Research output: Contribution to journal › Article › peer-review

Fate of prions in soil: degradation of recombinant prion in aqueous extracts from soil and casts of two earthworm species.

Golyshin, P., Nechitaylo, T. Y., Timmis, K. N., Byzov, B. A., Kurakov, A. V., Belogolova, E., Jones, D. L., Ferrer, M. & Golyshin, P. N., 1 Jul 2010, In: Soil Biology and Biochemistry. 42, 7, p. 1168-1171

Research output: Contribution to journal › Article › peer-review

Ferroplasma acidiphilum gen. nov., sp nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea.

Golyshina, O. V., Pivovarova, T. A., Karavaiko, G. I., Kondratéva, T. F., Moore, E. R., Abraham, W. R., Lünsdorf, H., Timmis, K. N., Yakimov, M. M. & Golyshin, P. N., 1 May 2000, In: International Journal of Systematic and Evolutionary Microbiology. 50 , 3, p. 997-1006 10 p.

Research output: Contribution to journal › Article › peer-review

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago)

Bortoluzzi, G., Romeo, T., La Cono, V., La Spada, G., Smedile, F., Esposito, V., Sabatino, G., Di Bella, M., Canese, S., Scotti, G., Bo, M., Giuliano, L., Golyshin, P., Jones, D., Yakimov, M. M. & Andaloro, F., Sept 2017, In: Geobiology. 15, 5, p. 664-677

Research output: Contribution to journal › Article › peer-review

Field response of N2O emissions, microbial communities, soil biochemical processes and winter barley growth to the addition of conventional and biodegradable microplastics

Greenfield, L. M., Graf, M., Rengaraj, S., Bargiela, R., Williams, G., Golyshin, P. N., Chadwick, D. R. & Jones, D. L., 15 Sept 2022, In: Agriculture, Ecosystems and Environment. 336, 108023.

Research output: Contribution to journal › Article › peer-review

Field-based assessment of the effect of conventional and biodegradable plastic mulch film on nitrogen partitioning, soil microbial diversity, and maize biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Golyshin, P., Evershed, R. P., Lloyd, C. E. M., Williams, G., Chadwick, D. & Jones, D. L., 1 Oct 2024, In: Applied Soil Ecology. 202, 105595.

Research output: Contribution to journal › Article › peer-review

Functional Metagenomics Unveils a Multifunctional Glycosyl Hydrolase from the Family 43 Catalysing the Breakdown of Plant Polymers in the Calf Rumen

Ferrer, M., Ghazi, A., Beloqui, A., Vieites, J. M., Lopez-Cortes, N., Marın-Navarro, J., Nechitaylo, T. Y., Guazzaroni, M. E., Polaina, J., Waliczek, A., Chernikova, T. N., Reva, O. N., Golyshina, O. V. & Golyshin, P. N., 25 Jun 2012, In: PLoS ONE. 7, 6, p. e38134

Research output: Contribution to journal › Article › peer-review

Functional consequences of single:double ring transitions in chaperonins: life in the cold.

Ferrer, M., Lunsdorf, H., Chernikova, T. N., Yakimov, M., Timmis, K. N. & Golyshin, P. N., 1 Jul 2004, In: Molecular Microbiology. 53, 1, p. 167-182

Research output: Contribution to journal › Article › peer-review

Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx

Alcaide, M., Messina, E., Richter, M., Bargiela, R., Peplies, J., Huws, S. A., Newbold, C. J., Golyshin, P. N., Simón, M. A., López, G., Yakimov, M. M. & Ferrer, M., 12 Dec 2012, In: PLoS ONE. 7, 12, p. e51521

Research output: Contribution to journal › Article › peer-review

Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Mar 2020, In: Nature Catalysis. 3, 3, p. 319-328

Research output: Contribution to journal › Article › peer-review

Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

Research output: Contribution to journal › Article › peer-review

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

Research output: Contribution to journal › Article › peer-review

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220

Research output: Contribution to journal › Article › peer-review

Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13

Research output: Contribution to journal › Article › peer-review

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F.-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Jul 2006, In: Nature Biotechnology. 24, 8, p. 997-1004 8 p.

Research output: Contribution to journal › Article › peer-review

Genomic and mechanistic insights into the biodegradation of organic pollutants.

Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224

Research output: Contribution to journal › Article › peer-review

Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.

Research output: Contribution to journal › Article › peer-review

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader

Werner, J., Ferrer, M., Michel, G., Mann, A. J., Huang, S., Juarez, S., Ciordia, S., Albar, J. P., Alcaide, M., La Cono, V., Yakimov, M. M., Antunes, A., Taborda, M., da Costa, M. S., Hai, T., Glockner, F. O., Golyshina, O. V., Golyshin, P. N. & Teeling, H., 1 Aug 2014, In: Environmental Microbiology. 16, 8, p. 2525-2537

Research output: Contribution to journal › Article › peer-review

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea

Golyshin, P., Yakimov, M. M., La Cono, V., Smedile, F., Crisafi, F., Arcadi, E., Leonardi, M., Decembrini, F., Catalfamo, M., Bargiela, R., Ferrer, M., Golyshin, P. & Giuliano, L., 1 Dec 2014, In: Environmental Microbiology Reports. p. 709-722

Research output: Contribution to journal › Article › peer-review

High representation of archaea across all depths in oxic and low-pH sediment layers underlying an acidic stream

Distaso, M., Bargiela, R., Brailsford, F., Williams, G., Wright, S., Lunev, E. A., Toshchakov, S. V., Yakimov, M. M., Jones, D. L., Golyshin, P. & Golyshina, O., 17 Nov 2020, In: Frontiers in Microbiology. 11, p. 576520

Research output: Contribution to journal › Article › peer-review

Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata

Chernikova, T., Bargiela, R., Toshchakov, S. V., Shivaraman, V., Lunev, E. A., Yakimov, M. M., Thomas, D. N. & Golyshin, P., 28 Oct 2020, In: Frontiers in Microbiology. 11, 572931.

Research output: Contribution to journal › Article › peer-review

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata using functional metagenomics

Alcaide, M., Tchigvinstsev, A., Martinez-Martinez, M., Popovic, A., Reva, O. N., Lafraya, A., Bargiela, R. N., Nechitaylo, T. Y., Matesanz, R., Cambon-Bonavita, M., Jebbar, M., Savchenko, A., Yakimov, M. M., Golyshina, O., Yakunin, A. F., Golyshin, P., Ferrer, M. & The MAMBA Consortium., [. V., 16 Jan 2015, In: Applied and Environmental Microbiology. 81, 6, p. 2125-2136

Research output: Contribution to journal › Article › peer-review

Identification of an Amylomaltase from the Halophilic Archaeon Haloquadratum walsbyi by Functional Metagenomics: Structural and Functional Insights

Leoni, C., Manzari, C., Hai, T., Golyshin, P., Pesole, G., Volpicella, M. & Ceci, L. R., 7 Jan 2022, In: Life. 12, 1

Research output: Contribution to journal › Article › peer-review

Increasing concentration of pure micro- and macro-LDPE and PP plastic negatively affect crop biomass, nutrient cycling, and microbial biomass

Graf, M., Greenfield, L., Reay, M. K., Bargiela, R., Williams, G., Onyije, C., Lloyd, C. E. M., Bull, I. D., Evershed, R. P., Golyshin, P., Chadwick, D. & Jones, D. L., 15 Sept 2023, In: Journal of Hazardous Materials. 458, p. 131932

Research output: Contribution to journal › Article › peer-review

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data

Bourguignon, N., Bargiela, R., Rojo, D., Chernikova, T., Lopez de Rodas, S. A., Garcia-Cantalejo, J., Nather, D. J., Golyshin, P., Barbas, C., Ferrero, M. & Ferrer, M., 1 Dec 2016, In: World Journal of Microbiology and Biotechnology. 32, 201

Research output: Contribution to journal › Article › peer-review

Inter-conversion of catalytic abilities in a bifunctional carboxyl/feruloyl-esterase from earthworm gut metagenome

Vieites, J. M., Ghazi, A., Beloqui, A., Polaina, J., Andreu, J. M., Golyshina, O. V., Nechitaylo, T. Y., Waliczek, A., Yakimov, M. M., Golyshin, P. N. & Ferrer, M., 1 Jan 2010, In: Microbial Biotechnology. 3, 1, p. 48-58

Research output: Contribution to journal › Article › peer-review

Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome

Prive, F., Newbold, C. J., Kaderbhai, N. N., Girdwood, S. G., Golyshina, O. V., Golyshin, P. N., Scollan, N. D. & Huws, S. A., 11 Jan 2015, In: Applied Microbiology and Biotechnology. 99, 13, p. 5475-5485

Research output: Contribution to journal › Article › peer-review

Klonirovanie gena vnekletochnoĭ RNKazy Bacillus circulans

Fedorova, N. D., Shul'ga, A. A., Peredel'chuk, M. P., Kozharinova, L. V., Golyshin, P. N., Riabchenko, N. F. & Kirpichnikov, M. P., 1 Mar 1994, In: Molekuliarnaia biologiia. 28, 2, p. 468-71 4 p.

Research output: Contribution to journal › Article › peer-review

Land cover and nutrient enrichment regulates low-molecular weight dissolved organic matter turnover in freshwater ecosystems

Brailsford, F. L., Glanville, H. C., Marshall, M. R., Yates, C. A., Owen, A. T., Golyshin, P. N., Johnes, P. J. & Jones, D. L., Aug 2021, In: Limnology and Oceanography. 66, 8, p. 2979-2987 9 p.

Research output: Contribution to journal › Article › peer-review

Limits of life in MgCI2-containing environments: chaotropicity defines the window.

Golyshin, P., Hallsworth, J. E., Yakimov, M. M., Golyshin, P. N., Gillion, J. L., D'Auria, G., de Lima Alves, F., La Cono, V., Genovese, M., McKew, B. A., Hayes, S. L., Harris, G., Giuliano, L., Timmis, K. N. & McGenity, T. J., 1 Mar 2007, In: Environmental Microbiology. 9, 3, p. 801-813

Research output: Contribution to journal › Article › peer-review

Low temperature induced systems failure in Escherichia coli: Insights from rescue by cold-adapted chaperones.

Golyshin, P., Strocchi, M., Ferrer, M., Timmis, K. N. & Golyshin, P. N., 1 Jan 2006, In: Proteomics. 6, 1, p. 193-206

Research output: Contribution to journal › Article › peer-review

Lutispora saccharofermentans sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus Lutispora to include species which are non-spore-forming and mesophilic

El Houari, A., Carpenter, M., Chaplin, D., Golyshin, P. & McDonald, J. E., Feb 2023, In: International Journal of Systematic Evolutionary Microbiology. 73, 1, 005683.

Research output: Contribution to journal › Article › peer-review

Members of the Uncultured Taxon OP1 (''Acetothermia'') Predominate in the Microbial Community of an Alkaline Hot Spring at East-Tuvinian Upland

Korzhenkov, A. A., Teplyuk, A. V., Lebedinsky, A. V., Khvashchevskaya, A. A., Kopylova, Y. G., Arakchaa, K. D., Golyshin, P. N., Lunev, E. A., Golyshina, O. V., Kublanov, I. V., Toshchakov, S. V. & Gavrilov, S. N., 2018, In: Microbiology. 87, 6, p. 783-795 13 p.

Research output: Contribution to journal › Article › peer-review

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT

Golyshina, O., Hai, T., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., LaCono, V., Smedile, F., Slesarev, A., Rojo, D., Barbas, C., Ferrer, M., Yakimov, M. M. & Golyshin, P., 16 Jun 2017, In: Scientific Reports. 7, 3682.

Research output: Contribution to journal › Article › peer-review

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

Smedile, F., Messina, E., La Cono, V., Tsoy, O., Monticelli, L. S., Borghini, M., Giuliano, L., Golyshin, P. N., Mushegian, A. & Yakimov, M. M., 1 Jan 2013, In: Environmental Microbiology. 15, 1, p. 167-182

Research output: Contribution to journal › Article › peer-review