School of Environmental & Natural Sciences
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The microbiology of acid mine drainage: genesis and biotreatment.
Johnson, D. B., Dziurla, M. A., Kolmert, A. & Hallberg, K. B., 1 May 2002, In: South African Journal of Science. 98, 5-6, p. 249-255Research output: Contribution to journal › Article › peer-review
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Sulfobacillus benefaciens sp nov., an acidophilic facultative anaerobic Firmicute isolated from mineral bioleaching operations.
Johnson, D. B., Joulian, C., d'Hughes, P. & Hallberg, K. B., 1 Nov 2008, In: Extremophiles. 12, 6, p. 789-798Research output: Contribution to journal › Article › peer-review
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Deconstructing and reconstructing microbial communities that promote the natural attenuation of acidic mine waters
Johnson, B., 2 Apr 2017, In: Abstracts of papers - American Chemical Society. 253Research output: Contribution to journal › Meeting Abstract › peer-review
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Dissimilatory reduction of sulfate in extremely acidic environments is carried out by novel sulfidogenic bacteria in syntrophic consortia.
Johnson, D. B., Rowe, O. F., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 36.Research output: Contribution to conference › Paper
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Biomining goes underground
Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166Research output: Contribution to journal › Article › peer-review
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Ferrimicrobium acidiphilum gen. nov., sp nov and Ferrithrix thermotolerans gen. nov., sp nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria.
Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Thomas, A. & Hallberg, K. B., 1 May 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 1082-1089Research output: Contribution to journal › Article › peer-review
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Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.
Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93Research output: Contribution to journal › Article › peer-review
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"Bioshrouding": a novel approach for securing reactive mineral tailings
Johnson, D. B., Yajie, L. & Okibe, N., Mar 2008, In: Biotechnology Letters. 30, 3, p. 445-9 5 p.Research output: Contribution to journal › Article › peer-review
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Editorial: Recent Advances in Acidophile Microbiology: Fundamentals and Applications
Johnson, D. B. & Schippers, A., 14 Mar 2017, In: Frontiers in Microbiology. 8, p. 428Research output: Contribution to journal › Article › peer-review
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Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite
Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.Research output: Contribution to journal › Article › peer-review
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Biodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, as revealed by a combination of cultivation-based and cultivation-independent techniques.
Johnson, D. B., Kimura, S., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 139.Research output: Contribution to conference › Paper
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Biomining in reverse gear: using bacteria to extract metals from oxidized ores
Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5Research output: Contribution to journal › Article › peer-review
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Microbially-mediated dissolution and synthesis of minerals in extremely acidic environments
Johnson, D. B., 20 Apr 2012.Research output: Contribution to conference › Paper
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Concentrate mineralogy dictates the composition of bioleaching mineral consortia
Johnson, D. B., Yajie, L., Okibe, N., Coupland, K. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 403-404Research output: Contribution to journal › Article › peer-review
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Physiology and ecology of acidophilic microorganisms.
Johnson, D. B., Gerday, C. (Editor) & Glansdorff, N. (Editor), 1 Jan 2007, Physiology and Biochemistry of Extremophiles. 2007 ed. American Society for Microbiology, p. 257-270Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Biodiversity of acidophilic moderate thermophiles isolated from two sites in Yellowstone National Park, and their roles in the dissimilatory oxido-reduction of iron.
Johnson, D. B., Body, D. A., Bridge, T. A., Bruhn, D. F., Roberto, F. F., Reysenbach, A. L. (Editor), Voytek, M. (Editor) & Mancinelli, R. (Editor), 1 Jan 2001, Thermophiles: Biodiversity: Ecology and Evolution. 2001 ed. Kluwer Academic/Plenum Publishers, p. 23-39Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis
Johnson, D. B., Okibe, N. & Hallberg, K. B., 1 Mar 2005, In: Journal of Microbiological Methods. 60, 3, p. 299-313Research output: Contribution to journal › Article › peer-review
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Role of pure and mixed cultures of gram-positive eubacteria in mineral leaching.
Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Yahya, A., Hallberg, K. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 461-470Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Sulfidogenesis at low pH: a novel approach for bioremediating acid rock drainage and recovering soluble metals.
Johnson, D. B., Rowe, O. F., Kimura, S. & Hallberg, K. B., 1 Jan 2005.Research output: Contribution to conference › Paper
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Developing Sustainable Biotechnologies for Mine Water Treatment in the 21st Century
Johnson, B., Santos, A. L., Falagan, C., Jones, R. M., Grail, B. M., Holanda, R. & Hedrich, S., Jul 2016, Procddings IMWA 2016. p. 782-789Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Using bacteria to break and make minerals in acidic liquours: industrial and environmental implications
Johnson, D. B., 19 Jun 2013.Research output: Contribution to conference › Paper
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Use of organic amendments for remediation: turning waste to good use
Jones, D. L. & Healey, J. R., 1 Dec 2010, In: Elements. 6, 6, p. 369-375Research output: Contribution to journal › Article › peer-review
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Role of substrate supply on microbial carbon use efficiency and its role in interpreting soil microbial community-level physiological profiles (CLPP)
Jones, D. L., Hill, P., Smith, A., Farrell, M., Ge, T. & Murphy, D. V., Aug 2018, In: Soil Biology and Biochemistry. 123, p. 1-6 6 p.Research output: Contribution to journal › Article › peer-review
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An experimental use of floating treatment wetlands (FTWs) to reduce phytoplankton growth in freshwaters
Jones, T., Willis, N., Gough, R. & Freeman, C., Feb 2017, In: Ecological Engineering. 99, p. 316-323Research output: Contribution to journal › Article › peer-review
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Aluminium effects on organic acid mineralization in a Norway spruce forest soil.
Jones, D. L., Eldhuset, T., De Wit, H. A. & Swensen, B., 1 Jul 2001, In: Soil Biology and Biochemistry. 33, 9, p. 1259-1267Research output: Contribution to journal › Article › peer-review
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Organic acid behavior in soils: misconceptions and knowledge gaps.
Jones, D. L., Dennis, P. G., Owen, A. G. & Van Hees, P. A., 1 Jan 2003, In: Plant and Soil. 248, 1-2, p. 31-41Research output: Contribution to journal › Article › peer-review
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Influence of electrode geometry on the redox switching characteristics of conducting polymers
Jones, B. J. & Kalaji, M., 10 Aug 2005, In: Electrochimica Acta. 50, 22, p. 4505-4512Research output: Contribution to journal › Article › peer-review
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Human enteric pathogens in the farming environment.
Jones, D. L., Campbell, G., Kaspar, C. W., Haygarth, P. M. (Editor) & Jarvis, S. C., 1 Jan 2002, Agriculture: hydrology and water quality. 2002 ed. CAB International, p. 133-154Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Microbial response time to sugar and amino acid additions to soil.
Jones, D. L. & Murphy, D. V., 1 Aug 2007, In: Soil Biology and Biochemistry. 39, 8, p. 2178-2182Research output: Contribution to journal › Article › peer-review
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Ring testing and field-validation of a Terrestrial Model Ecosystem (TME) - An instrument for testing potentially harmful substances: fate of the model chemical carbendazim
Jones, S. E., Williams, D. J., Holliman, P. J., Taylor, N., Baumann, J., Forster, B., Van Gestel, C. A. & Rodrigues, J. M., 1 Feb 2004, In: Ecotoxicology. 13, 1-2, p. 29-42Research output: Contribution to journal › Article › peer-review
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Dissolved organic nitrogen uptake by plants - an important N uptake pathway?
Jones, D. L., Healey, J. R., Willett, V. B., Farrar, J. F. & Hodge, A., 1 Mar 2005, In: Soil Biology and Biochemistry. 37, 3, p. 413-423Research output: Contribution to journal › Article › peer-review
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Prey jitters; protean behaviour in grouped prey
Jones, K. A., Jackson, A. L. & Ruxton, G. D., 1 Jul 2011, In: Behavioral Ecology. 22, 4, p. 831-836Research output: Contribution to journal › Article › peer-review
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A re-investigation of the mycolic acids of Mycobacterium avium
Jones, A., Lee, O.Y.-C., Minnikin, D. E., Baird, M. S. & Al Dulayymi, J. R., Aug 2020, In: Chemistry and Physics of Lipids. 230, 104928.Research output: Contribution to journal › Article › peer-review
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Organic acids in the rhizosphere - a critical review
Jones, D. L., 30 Aug 1998, In: Plant and Soil. 205, 1, p. 25-44Research output: Contribution to journal › Review article › peer-review
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Role of calcium and other ions in directing root hair tip growth in Limnobium stoloniferum
Jones, D. L., Shaff, J. E. & Kochian, L. V., Nov 1995, In: Planta. 197, 4, p. 672-680Research output: Contribution to journal › Article › peer-review
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Aluminum Inhibition of the Inositol 1,4,5-Trisphosphate Signal Transduction Pathway in Wheat Roots: A Role in Aluminum Toxicity?
Jones, D. L. & Kochian, L. V., Nov 1995, In: Plant Cell. 7, 11, p. 1913-1922Research output: Contribution to journal › Article › peer-review
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Influx and efflux of organic acids across the soil-root interface of Zea mays L. and its implications in rhizosphere C flow
Jones, D. L. & Darrah, P. R., Jun 1995, In: Plant and Soil. 173, 1, p. 103-109Research output: Contribution to journal › Article › peer-review
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Evaluation of polysulfone hollow fibres and ceramic suction samplers as devices for the in situ extraction of soil solution
Jones, D. L. & Edwards, A. C., Mar 1993, In: Plant and Soil. 150, 2, p. 157-165Research output: Contribution to journal › Article › peer-review
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Influx and efflux of amino acids from Zea mays L. roots and their implications for N nutrition and the rhizosphere
Jones, D. L. & Darrah, P. R., Oct 1993, In: Plant and Soil. 155, p. 87-90Research output: Contribution to journal › Article › peer-review
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Can In-Situ Soil Nitrate Measurements Improve Nitrogen-Use Efficiency in Agricultural Systems?
Jones, D. L., Chadwick, D. R., Rengaraj, S., Wu, D., Williams, A. P., Hill, P. W., Miller, A. J., Lark, R. M., Rosolem, C. A., Damin, V. & Shaw, R., 1 Dec 2018, Proceedings 1466-1314. International Fertiliser Society, Vol. 825. p. 1-32 32 p. 825Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Possible scavenging behaviour in Ornate Hawk-eagle Spizaetus ornatus; Amazonas, Brazil
Jones, S. E. I. & Dorward, L., Mar 2014, In: Revista Brasileira de Ornitologia. 22, 1, p. 27-31Research output: Contribution to journal › Article › peer-review
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Rice rhizodeposition and carbon stabilisation in paddy soil are regulated via drying-rewetting cycles and nitrogen fertilisation
Jones, D., 1 May 2017, In: Biology and Fertility of Soils. 53, 4, p. 407 417 p.Research output: Contribution to journal › Article › peer-review
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Thresholds of biodiversity and ecosystem function in a forest ecosystem undergoing dieback
Jones, D., Jul 2017, In: Scientific Reports. 7, 6775.Research output: Contribution to journal › Article › peer-review
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Waste Water Treatment
Jones, D., Freeman, C. & Sánchez-Rodríguez, A. R., 1 Jan 2017, Encyclopedia of Applied Plant Sciences. Thomas, B., Murray, B. G. & Murphy , D. J. (eds.). 2 ed. Elsevier, Vol. 3. p. 352 10 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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New synthetic lipid antigens for rapid serological diagnosis of tuberculosis
Jones, A., Pitts, M., Al-Dulayymi, J., Gibbons, J., Ramsay, A., Goletti, D., Gwenin, C. & Baird, M., 14 Aug 2017, In: PLoS ONE. 12, 8, e0181414.Research output: Contribution to journal › Article › peer-review
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Metal contaminated biochar and wood ash negatively affect plant growth and soil quality after land application
Jones, D. L. & Quilliam, R. S., 15 Jul 2014, In: Journal of Hazardous Materials. 276, p. 362-370Research output: Contribution to journal › Article › peer-review
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Testing the use of interviews as a tool for monitoring trends in the harvesting of wild species
Jones, J. P. G., Andriamarovololona, M. M., Hockley, N., Gibbons, J. M. & Milner-Gulland, E. J., 28 Jun 2008, In: Journal of Applied Ecology. 45, 4, p. 1205-1212Research output: Contribution to journal › Article › peer-review
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Population regulation and demography in a harvested freshwater crayfish from Madagascar.
Jones, J. P. G. & Coulson, T., 1 Mar 2006, In: Oikos. 112, 3, p. 602-611Research output: Contribution to journal › Article › peer-review
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Mutational analysis of the critical bases involved in activation of the AreR-regulated sigma(54)-dependent promoter in Acinetobacter sp strain ADP1.
Jones, R. M. & Williams, P. A., 1 Sept 2003, In: Applied and Environmental Microbiology. 69, 9, p. 5627-5635Research output: Contribution to journal › Article › peer-review
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The ecology and conservation status of Madagascar's endemic freshwater crayfish (Parastacidae; Astacoides).
Jones, J. P. G., Andriahajaina, F. B., Hockley, N. J., Crandall, K. A. & Ravoahangimalala, O. R., 1 Sept 2007, In: Freshwater Biology. 52, 9, p. 1820-1833Research output: Contribution to journal › Article › peer-review