School of Environmental & Natural Sciences

  1. Published

    The microbiology of acid mine drainage: genesis and biotreatment.

    Johnson, D. B., Dziurla, M. A., Kolmert, A. & Hallberg, K. B., 1 May 2002, In: South African Journal of Science. 98, 5-6, p. 249-255

    Research output: Contribution to journalArticlepeer-review

  2. Published

    Sulfobacillus benefaciens sp nov., an acidophilic facultative anaerobic Firmicute isolated from mineral bioleaching operations.

    Johnson, D. B., Joulian, C., d'Hughes, P. & Hallberg, K. B., 1 Nov 2008, In: Extremophiles. 12, 6, p. 789-798

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Deconstructing and reconstructing microbial communities that promote the natural attenuation of acidic mine waters

    Johnson, B., 2 Apr 2017, In: Abstracts of papers - American Chemical Society. 253

    Research output: Contribution to journalMeeting Abstractpeer-review

  4. Published

    Dissimilatory reduction of sulfate in extremely acidic environments is carried out by novel sulfidogenic bacteria in syntrophic consortia.

    Johnson, D. B., Rowe, O. F., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 36.

    Research output: Contribution to conferencePaper

  5. Published

    Biomining goes underground

    Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Ferrimicrobium acidiphilum gen. nov., sp nov and Ferrithrix thermotolerans gen. nov., sp nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria.

    Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Thomas, A. & Hallberg, K. B., 1 May 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 1082-1089

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.

    Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93

    Research output: Contribution to journalArticlepeer-review

  8. Published

    "Bioshrouding": a novel approach for securing reactive mineral tailings

    Johnson, D. B., Yajie, L. & Okibe, N., Mar 2008, In: Biotechnology Letters. 30, 3, p. 445-9 5 p.

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Editorial: Recent Advances in Acidophile Microbiology: Fundamentals and Applications

    Johnson, D. B. & Schippers, A., 14 Mar 2017, In: Frontiers in Microbiology. 8, p. 428

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite

    Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    Biodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, as revealed by a combination of cultivation-based and cultivation-independent techniques.

    Johnson, D. B., Kimura, S., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 139.

    Research output: Contribution to conferencePaper

  12. Published

    Biomining in reverse gear: using bacteria to extract metals from oxidized ores

    Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5

    Research output: Contribution to journalArticlepeer-review

  13. Published
  14. Published

    Concentrate mineralogy dictates the composition of bioleaching mineral consortia

    Johnson, D. B., Yajie, L., Okibe, N., Coupland, K. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 403-404

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Physiology and ecology of acidophilic microorganisms.

    Johnson, D. B., Gerday, C. (Editor) & Glansdorff, N. (Editor), 1 Jan 2007, Physiology and Biochemistry of Extremophiles. 2007 ed. American Society for Microbiology, p. 257-270

    Research output: Chapter in Book/Report/Conference proceedingChapter

  16. Published

    Biodiversity of acidophilic moderate thermophiles isolated from two sites in Yellowstone National Park, and their roles in the dissimilatory oxido-reduction of iron.

    Johnson, D. B., Body, D. A., Bridge, T. A., Bruhn, D. F., Roberto, F. F., Reysenbach, A. L. (Editor), Voytek, M. (Editor) & Mancinelli, R. (Editor), 1 Jan 2001, Thermophiles: Biodiversity: Ecology and Evolution. 2001 ed. Kluwer Academic/Plenum Publishers, p. 23-39

    Research output: Chapter in Book/Report/Conference proceedingChapter

  17. Published

    Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis

    Johnson, D. B., Okibe, N. & Hallberg, K. B., 1 Mar 2005, In: Journal of Microbiological Methods. 60, 3, p. 299-313

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Role of pure and mixed cultures of gram-positive eubacteria in mineral leaching.

    Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Yahya, A., Hallberg, K. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 461-470

    Research output: Chapter in Book/Report/Conference proceedingChapter

  19. Published

    Sulfidogenesis at low pH: a novel approach for bioremediating acid rock drainage and recovering soluble metals.

    Johnson, D. B., Rowe, O. F., Kimura, S. & Hallberg, K. B., 1 Jan 2005.

    Research output: Contribution to conferencePaper

  20. Published

    Developing Sustainable Biotechnologies for Mine Water Treatment in the 21st Century

    Johnson, B., Santos, A. L., Falagan, C., Jones, R. M., Grail, B. M., Holanda, R. & Hedrich, S., Jul 2016, Procddings IMWA 2016. p. 782-789

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  21. Published
  22. Published

    Use of organic amendments for remediation: turning waste to good use

    Jones, D. L. & Healey, J. R., 1 Dec 2010, In: Elements. 6, 6, p. 369-375

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Role of substrate supply on microbial carbon use efficiency and its role in interpreting soil microbial community-level physiological profiles (CLPP)

    Jones, D. L., Hill, P., Smith, A., Farrell, M., Ge, T. & Murphy, D. V., Aug 2018, In: Soil Biology and Biochemistry. 123, p. 1-6 6 p.

    Research output: Contribution to journalArticlepeer-review

  24. Published

    An experimental use of floating treatment wetlands (FTWs) to reduce phytoplankton growth in freshwaters

    Jones, T., Willis, N., Gough, R. & Freeman, C., Feb 2017, In: Ecological Engineering. 99, p. 316-323

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Aluminium effects on organic acid mineralization in a Norway spruce forest soil.

    Jones, D. L., Eldhuset, T., De Wit, H. A. & Swensen, B., 1 Jul 2001, In: Soil Biology and Biochemistry. 33, 9, p. 1259-1267

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Organic acid behavior in soils: misconceptions and knowledge gaps.

    Jones, D. L., Dennis, P. G., Owen, A. G. & Van Hees, P. A., 1 Jan 2003, In: Plant and Soil. 248, 1-2, p. 31-41

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Influence of electrode geometry on the redox switching characteristics of conducting polymers

    Jones, B. J. & Kalaji, M., 10 Aug 2005, In: Electrochimica Acta. 50, 22, p. 4505-4512

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Human enteric pathogens in the farming environment.

    Jones, D. L., Campbell, G., Kaspar, C. W., Haygarth, P. M. (Editor) & Jarvis, S. C., 1 Jan 2002, Agriculture: hydrology and water quality. 2002 ed. CAB International, p. 133-154

    Research output: Chapter in Book/Report/Conference proceedingChapter

  29. Published

    Microbial response time to sugar and amino acid additions to soil.

    Jones, D. L. & Murphy, D. V., 1 Aug 2007, In: Soil Biology and Biochemistry. 39, 8, p. 2178-2182

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Ring testing and field-validation of a Terrestrial Model Ecosystem (TME) - An instrument for testing potentially harmful substances: fate of the model chemical carbendazim

    Jones, S. E., Williams, D. J., Holliman, P. J., Taylor, N., Baumann, J., Forster, B., Van Gestel, C. A. & Rodrigues, J. M., 1 Feb 2004, In: Ecotoxicology. 13, 1-2, p. 29-42

    Research output: Contribution to journalArticlepeer-review

  31. Published

    Dissolved organic nitrogen uptake by plants - an important N uptake pathway?

    Jones, D. L., Healey, J. R., Willett, V. B., Farrar, J. F. & Hodge, A., 1 Mar 2005, In: Soil Biology and Biochemistry. 37, 3, p. 413-423

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Prey jitters; protean behaviour in grouped prey

    Jones, K. A., Jackson, A. L. & Ruxton, G. D., 1 Jul 2011, In: Behavioral Ecology. 22, 4, p. 831-836

    Research output: Contribution to journalArticlepeer-review

  33. Published

    A re-investigation of the mycolic acids of Mycobacterium avium

    Jones, A., Lee, O.Y.-C., Minnikin, D. E., Baird, M. S. & Al Dulayymi, J. R., Aug 2020, In: Chemistry and Physics of Lipids. 230, 104928.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Organic acids in the rhizosphere - a critical review

    Jones, D. L., 30 Aug 1998, In: Plant and Soil. 205, 1, p. 25-44

    Research output: Contribution to journalReview articlepeer-review

  35. Published

    Role of calcium and other ions in directing root hair tip growth in Limnobium stoloniferum

    Jones, D. L., Shaff, J. E. & Kochian, L. V., Nov 1995, In: Planta. 197, 4, p. 672-680

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Aluminum Inhibition of the Inositol 1,4,5-Trisphosphate Signal Transduction Pathway in Wheat Roots: A Role in Aluminum Toxicity?

    Jones, D. L. & Kochian, L. V., Nov 1995, In: Plant Cell. 7, 11, p. 1913-1922

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Influx and efflux of organic acids across the soil-root interface of Zea mays L. and its implications in rhizosphere C flow

    Jones, D. L. & Darrah, P. R., Jun 1995, In: Plant and Soil. 173, 1, p. 103-109

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Evaluation of polysulfone hollow fibres and ceramic suction samplers as devices for the in situ extraction of soil solution

    Jones, D. L. & Edwards, A. C., Mar 1993, In: Plant and Soil. 150, 2, p. 157-165

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Influx and efflux of amino acids from Zea mays L. roots and their implications for N nutrition and the rhizosphere

    Jones, D. L. & Darrah, P. R., Oct 1993, In: Plant and Soil. 155, p. 87-90

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Can In-Situ Soil Nitrate Measurements Improve Nitrogen-Use Efficiency in Agricultural Systems?

    Jones, D. L., Chadwick, D. R., Rengaraj, S., Wu, D., Williams, A. P., Hill, P. W., Miller, A. J., Lark, R. M., Rosolem, C. A., Damin, V. & Shaw, R., 1 Dec 2018, Proceedings 1466-1314. International Fertiliser Society, Vol. 825. p. 1-32 32 p. 825

    Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

  41. Published

    Possible scavenging behaviour in Ornate Hawk-eagle Spizaetus ornatus; Amazonas, Brazil

    Jones, S. E. I. & Dorward, L., Mar 2014, In: Revista Brasileira de Ornitologia. 22, 1, p. 27-31

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Rice rhizodeposition and carbon stabilisation in paddy soil are regulated via drying-rewetting cycles and nitrogen fertilisation

    Jones, D., 1 May 2017, In: Biology and Fertility of Soils. 53, 4, p. 407 417 p.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Thresholds of biodiversity and ecosystem function in a forest ecosystem undergoing dieback

    Jones, D., Jul 2017, In: Scientific Reports. 7, 6775.

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Waste Water Treatment

    Jones, D., Freeman, C. & Sánchez-Rodríguez, A. R., 1 Jan 2017, Encyclopedia of Applied Plant Sciences. Thomas, B., Murray, B. G. & Murphy , D. J. (eds.). 2 ed. Elsevier, Vol. 3. p. 352 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

  45. Published

    New synthetic lipid antigens for rapid serological diagnosis of tuberculosis

    Jones, A., Pitts, M., Al-Dulayymi, J., Gibbons, J., Ramsay, A., Goletti, D., Gwenin, C. & Baird, M., 14 Aug 2017, In: PLoS ONE. 12, 8, e0181414.

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Metal contaminated biochar and wood ash negatively affect plant growth and soil quality after land application

    Jones, D. L. & Quilliam, R. S., 15 Jul 2014, In: Journal of Hazardous Materials. 276, p. 362-370

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Testing the use of interviews as a tool for monitoring trends in the harvesting of wild species

    Jones, J. P. G., Andriamarovololona, M. M., Hockley, N., Gibbons, J. M. & Milner-Gulland, E. J., 28 Jun 2008, In: Journal of Applied Ecology. 45, 4, p. 1205-1212

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Population regulation and demography in a harvested freshwater crayfish from Madagascar.

    Jones, J. P. G. & Coulson, T., 1 Mar 2006, In: Oikos. 112, 3, p. 602-611

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Mutational analysis of the critical bases involved in activation of the AreR-regulated sigma(54)-dependent promoter in Acinetobacter sp strain ADP1.

    Jones, R. M. & Williams, P. A., 1 Sept 2003, In: Applied and Environmental Microbiology. 69, 9, p. 5627-5635

    Research output: Contribution to journalArticlepeer-review

  50. Published

    The ecology and conservation status of Madagascar's endemic freshwater crayfish (Parastacidae; Astacoides).

    Jones, J. P. G., Andriahajaina, F. B., Hockley, N. J., Crandall, K. A. & Ravoahangimalala, O. R., 1 Sept 2007, In: Freshwater Biology. 52, 9, p. 1820-1833

    Research output: Contribution to journalArticlepeer-review