School of Environmental & Natural Sciences

  1. Published

    Biodegradation of low molecular weight organic acids in a limed forest soil.

    Van Hees, P. A., Jones, D. L. & Godbold, D. L., 1 Jul 2003, In: Water, Air and Soil Pollution: Focus. 3, 4, p. 121-144

    Research output: Contribution to journalArticlepeer-review

  2. Published

    Biodegradation of low molecular weight organic acids in coniferous forest podzolic soils.

    Van Hees, P. A., Jones, D. L. & Godbold, D. L., 1 Sept 2002, In: Soil Biology and Biochemistry. 34, 9, p. 1261-1272

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Biodiversity Conservation: Uncertainty in predictions of extinction risk/Effects of changes in climate and land use/Climate change and extinction risk (reply)

    Thomas, C. D., Williams, S. E., Cameron, A., Green, R. E., Bakkenes, M., Beaumont, L. J., Collingham, Y. C., Erasmus, B. F. N., Ferreira De Sequeira, M., Grainger, A., Hannah, L., Hughes, L., Huntley, B., Van Jaarsveld, A. S., Midgley, G., Miles, L., Ortega-Huerta, M. A., Peterson, A. T. & Phillips, O. L., Jul 2004, In: Nature. 430

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy.

    Kimura, S., Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Aug 2011, In: Environmental Microbiology. 13, 8, p. 2092-2104

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Biodiversity and interactions of acidophiles: Key to understanding and optimizing microbial processing of ores and concentrates.

    Johnson, D. B., 1 Dec 2008, In: Transactions of Nonferrous Metals Society of China. 18, 6, p. 1367-1373

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Biodiversity conservation as a promising frontier for behavioural science

    Nielsen, K. S., Marteau, T. M., Bauer, J. M., Bradbury, R. B., Broad, S., Burgess, G., Burgman, M. A., Byerly, H., Clayton, S., Espelosin, D., Ferraro, P. J., Fisher, B., Garnett, E. E., Jones, J. P. G., Otieno, M., Polasky, S., Ricketts, T. H., Trevelyan, R., van der Linden, S., Verissimo, D. & Balmford, A., May 2021, In: Nature Human Behaviour. 5, 5, p. 550-556

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Biodiversity for biocatalysis: A review of the α/β-hydrolase fold superfamily of esterases-lipases discovered in metagenomes

    Ferrer, M., Bargiela, R., Martínez-Martínez, M., Mir, J., Koch, R., Golyshina, O. & Golyshin, P., 1 Mar 2016, In: Biocatalysis and Biotransformation . 33, 5-6, p. 235-249

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Biodiversity increases and decreases ecosystem stability

    Pennekamp, F., Pontarp, M., Tabi, A., Altermatt, F., Alther, R., Choffat, Y., Fronhofer, E. A., Ganesanandamoorthy, P., Garnier, A., Griffiths, J. I., Greene, S., Horgan, K., Massie, T. M., Machler, E., Palamara, G. M., Seymour, M. & Petchey, O. L., 1 Nov 2018, In: Nature. 563, p. 109-112

    Research output: Contribution to journalLetterpeer-review

  9. Published

    Biodiversity of acidophilic moderate thermophiles isolated from two sites in Yellowstone National Park, and their roles in the dissimilatory oxido-reduction of iron.

    Johnson, D. B., Body, D. A., Bridge, T. A., Bruhn, D. F., Roberto, F. F., Reysenbach, A. L. (ed.), Voytek, M. (ed.) & Mancinelli, R. (ed.), 1 Jan 2001, Thermophiles: Biodiversity: Ecology and Evolution. 2001 ed. Kluwer Academic/Plenum Publishers, p. 23-39

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. Published

    Biodiversity of acidophilic prokaryotes

    Hallberg, K. B. & Johnson, D. B., 1 Jan 2001, In: Advances in Applied Microbiology. 49, p. 37-84

    Research output: Contribution to journalArticlepeer-review

  11. Published
  12. Published

    Biodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, elucidated using a combined cultivation-based and cultivation-independent approaches.

    Kimura, S., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (ed.), Rawlings, D. E. (ed.) & Petersen, J. (ed.), 1 Jan 2005, p. 687-696.

    Research output: Contribution to conferencePaper

  13. Published

    Biodiversity on Mount Cameroon.

    Ndam, N., Healey, J. R., Acworth, J., Tchouto, P. G., Price, M. F. (ed.) & Butt, N. (ed.), 1 Jan 2000, Forests in Sustainable Mountain Development. 2000 ed. CABI Publishing, p. 46-51

    Research output: Chapter in Book/Report/Conference proceedingChapter

  14. Published

    Biogeochemical tags in fish: predicting spatial variations in strontium and manganese in Salmo trutta scales using stream water geochemistry

    Ramsay, A. L., Hughes, R. N., Chenery, S. R. & McCarthy, I. D., 11 Nov 2014, In: Canadian Journal of Fisheries and Aquatic Sciences. 72, 3, p. 422-433

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Biogeochemistry of a subterranean acidic mine water body at an abandoned copper mine.

    Coupland, K., Rowe, O., Hallberg, K. B., Johnson, D. B., Jarvis, A. P. (ed.), Dudgeon, B. A. (ed.) & Younger, P. L. (ed.), 1 Jan 2004, p. 113-119.

    Research output: Contribution to conferencePaper

  16. Published

    Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.

    Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93

    Research output: Contribution to journalArticlepeer-review

  17. Published

    Biogeography of the Indo-Australian Archipelago

    De Bruyn, M., Carvalho, G. R., Lohman, D. J., de Bruyn, M., Page, T., von Rintelen, K., Hall, R., Ng, P. K., Shih, H. T. & von Rintelen, T., 1 Dec 2011, In: Annual Review of Ecology, Evolution, and Systematics. 42, p. 205-226

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Biohydrometallurgy and the environment: Intimate and important interplay

    Johnson, D. B., 1 Sept 2006, In: Hydrometallurgy. 83, 1-4, p. 153-166

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Biohydrometallurgy and the environment: intimate and important associations.

    Johnson, D. B., Harrison, S. T. (ed.), Rawlings, D. E. (ed.) & Petersen, J. (ed.), 1 Jan 2005, p. liii-lxvii.

    Research output: Contribution to conferencePaper

  20. Published

    Bioleaching of Transition Metals From Limonitic Laterite Deposits and Reassessment of the Multiple Roles of Sulfur-Oxidizing Acidophiles in the Process

    Johnson, D. B., Smith, S. & Santos, A. L., 26 Jul 2021, In: Frontiers in Microbiology. 12, 703177.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite

    Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Bioleaching of pyrite at low pH and low redox potentials by novel mesophilic Gram-positive bacteria.

    Yahya, A. & Johnson, D. B., 1 Feb 2002, In: Hydrometallurgy. 63, 2, p. 181-188

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Bioleaching of pyrite by defined mixed cultures of moderately thermophilic acidophiles.

    Okibe, N., Johnson, D. B., Ciminelli, V. S. (ed.) & Garcia Jr, O. (ed.), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 443-451

    Research output: Chapter in Book/Report/Conference proceedingChapter

  24. Published

    Bioleaching of pyrite by defined mixed populations of moderately thermophilic acidophiles in pH-controlled bioreactors.

    Okibe, N., Johnson, D. B., Tsezos, M. (ed.), Hatzikioseyian, A. (ed.) & Remoudaki, E. (ed.), 1 Jan 2004, p. 165-173.

    Research output: Contribution to conferencePaper

  25. Published

    Biological characteristics of praziquantel-resistant and -susceptible isolates of Schistosoma mansoni.

    Liang, Y. S., Coles, G. C., Dai, J. R., Zhu, Y. C. & Doenhoff, M. J., 1 Oct 2001, In: Annals of Tropical Medicine and Parasitology. 95, 7, p. 715-723

    Research output: Contribution to journalArticlepeer-review

  26. E-pub ahead of print

    Biological knowledge shortfalls impede conservation efforts in poorly studied taxa—A case study of Laboulbeniomycetes

    Haelewaters, D., Matthews, T. J., Wayman, J. P., Cazabonne, J., Heyman, F., Quandt, C. A. & Martin, T. E., 23 Sept 2023, (E-pub ahead of print) In: Journal of Biogeography. 51, 1, p. 29-39 11 p.

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Biological manganese removal from acid mine drainage in constructed wetlands and prototype bioreactors.

    Hallberg, K. B. & Johnson, D. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 115-124

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Biological removal of sulfurous compounds and metals from inorganic wastewaters

    Johnson, B. & Santos, A. L., Oct 2020, Environmental Technologies to Treat Sulfur Pollution: Principles and Engineering. Lens, P. N. L. (ed.). 2nd ed. IWA Publishing, p. 215-246

    Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

  29. Published

    Biological roles of translin and translin-associated factor-X: RNA metabolism comes to the fore.

    Mcfarlane, R. J., Jaendling, A. & McFarlane, R. J., 15 Jul 2010, In: Biochemical Journal. 429, 2, p. 225-234

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Biological treatment of acid inorganic wastewaters.

    Hallberg, K. B. & Johnson, D. B., 1 Jan 2002.

    Research output: Contribution to conferencePaper

  31. Published

    Biological versus abiotic oxidation of iron in acid mine drainage waters: an important role for moderately acidophilic, iron-oxidising bacteria.

    Dennison, F., Johnson, D. B., Sen, A. M., Hallberg, K. B., Ciminelli, V. S. (ed.) & Garcia Jr, O. (ed.), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 493-501

    Research output: Chapter in Book/Report/Conference proceedingChapter

  32. Published

    Biologically active cyclopropanes and cyclopropenes

    Salaun, J. & Baird, M., 1995, In: Current Medicinal Chemistry. 2, p. 511-542

    Research output: Contribution to journalArticlepeer-review

  33. Published

    Biologically driven DOC release from peatlands during recovery from acidification

    Kang, H., Kwon, M. J., Kim, S., Lee, S., Jones, T. G., Johncock, A. C., Haraguchi, A. & Freeman, C., 18 Sept 2018, In: Nature Communications. 9, 3807.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Biologically important artificial light at night on the seafloor

    Davies, T. W., McKee, D., Fishwick, J., Tidau, S. & Smyth, T., 27 Jul 2020, In: Scientific Reports. 10, 1, 12545.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Biologically inspired herding of animal groups by robots

    King, A. J., Portugal, S. J., Strombom, D., Mann, R. P., Carrillo, J. A., Kalise, D., Croon, G. D., Barnett, H., Scerri, P., Gross, R., Chadwick, D. & Papadopoulou, M., 1 Feb 2023, In: Methods in Ecology and Evolution. 14, 2, p. 478-486 9 p.

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Biologically-induced precipitation of aluminium in synthetic acid mine water

    Falagan Rodriguez, C., Johnson, D. B., Sanchez-Espana, J. & Yusta, I., Jun 2016, Biohydromet 2016 Proceedings.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  37. Published

    Biologically-induced precipitation of aluminium in synthetic acid mine water

    Falagan Rodriguez, C., Yusta, I. & Johnson, B., 15 May 2017, In: Minerals Engineering. 106, p. 79-85

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

    Golyshina, O., Kublanov, I. V., Hai, T., Korzhenkov, A. A., Lunsdorf, H., Nechitaylo, T. Y., Toshchakov, S. V. & Golyshin, P., Dec 2016, In: Scientific Reports. 6, 39034.

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Biomimetic model studies towards ptilomycalin A

    Murphy, P. J., Williams, H. L., Hibbs, D. E., Hursthouse, M. B. & Malik, K. M. A., 10 Jun 1996, In: Tetrahedron. 52, 24, p. 8315-8332 18 p.

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Biomining

    Rawlings, D. E. (ed.) & Johnson, D. B. (ed.), 1 Jan 2006, 2006 ed. Springer Verlag.

    Research output: Book/ReportBook

  41. Published

    Biomining - biotechnologies for extracting and recovering metals from ores and waste materials

    Johnson, D. B., 6 May 2014, In: Current Opinion in Biotechnology. 30, p. 24-31

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Biomining goes underground

    Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Biomining in reverse gear: using bacteria to extract metals from oxidized ores

    Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Biomining: an Established and Dynamic Biotechnology

    Johnson, D. B., 1 Dec 2012, In: Microbiology Indonesia. 6, 4, p. 189-193

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Biooxidation of pyrite by defined mixed cultures of moderately thermophilic acidophiles in pH-controlled bioreactors: Significance of microbial interactions.

    Okibe, N. & Johnson, D. B., 5 Sept 2004, In: Biotechnology and Bioengineering. 87, 5, p. 574-583

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Biophysical modelling of intra-ring variations in tracheid features and wood density of Pinus pinaster trees exposed to seasonal droughts

    Wilkinson, S., Ogee, J., Domec, J. C., Rayment, M. & Wingate, L., 12 Mar 2015, In: Tree Physiology. 35, 3, p. 305-318

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Bioplastic (PHBV) addition to soil alters microbial community structure and negatively affects plant-microbial metabolic functioning in maize

    Brown, R. W., Chadwick, D. R., Zang, H., Graf, M., Liu, X., Wang, K., Greenfield, L. M. & Jones, D. L., 5 Jan 2023, In: Journal of Hazardous Materials. 441, 129959.

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

    Coscolín, C., Katzke, N., Garcia-Moyano, A., Navarro-Fernández, J., Almendral, D., Martinez-Martinez, M., Bollinger, A., Bargiela, R., Gerler, C., Chernikova, T. N., Rojo, D., Barbas, C., Tran, H., Golyshina, O. V., Koch, R., Yakimov, M. M., Bjerga, G. E. K., Golyshin, P. N., Jaeger, K-E. & Ferrer, M., 9 Jan 2019, In: Applied and Environmental Microbiology. 85, 2, e02404-18.

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Bioreduction of Sheep Carcasses Effectively Contains and Reduces Pathogen Levels under Operational and Simulated Breakdown Conditions

    Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J. E. & Williams, A. P., 21 May 2013, In: Environmental Science and Technology. 47, 10, p. 5267–5275

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Bioreduction of fallen stock – An evaluation of in-vessel bioreduction for containment of sheep prior to disposal: Final report

    Williams, A. P., Edwards-Jones, G. & Jones, D. L., 1 Jan 2008, 2008 ed. Unknown.

    Research output: Book/ReportCommissioned report