School of Environmental & Natural Sciences
- Article › Research › Peer-reviewed
- Published
Genome Analysis of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans CF27
Talla, E., Hedrich, S., Ji, B. Y., Johnson, D. B. & Bonnefoy, V., 1 Oct 2013, In: Advanced Materials Research. 825, p. 145-148Research output: Contribution to journal › Article › peer-review
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Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution
Dittrich, C., Hoelzl, F., Smith, S., Fouilloux, C. A., Parker, D. J., O'Connell, L. A., Knowles, L. S., Hughes, M., Fewings, A., Morgan, R., Rojas, B. & Comeault, A. A., 5 Jun 2024, In: Genome Biology and Evolution. 16, 6Research output: Contribution to journal › Article › peer-review
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Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)
Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13Research output: Contribution to journal › Article › peer-review
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Genome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix
Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2Research output: Contribution to journal › Article › peer-review
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Genome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23T
Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2Research output: Contribution to journal › Article › peer-review
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Genome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3
Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4Research output: Contribution to journal › Article › peer-review
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Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)
Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4Research output: Contribution to journal › Article › peer-review
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Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica
Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156Research output: Contribution to journal › Article › peer-review
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Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.
Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220Research output: Contribution to journal › Article › peer-review
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Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster
Hargreaves, A. D., Zhou, L., Christensen, J., Marletaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Seriwaka, K., Fox, B. A., Taylor, W. R., Mulley, J., Zhang, G., Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America: PNAS. 114, 29, p. 7677–7682Research output: Contribution to journal › Article › peer-review
- Published
Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea
Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13Research output: Contribution to journal › Article › peer-review
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Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Jul 2006, In: Nature Biotechnology. 24, 8, p. 997-1004 8 p.Research output: Contribution to journal › Article › peer-review
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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.
Kirkness, E. F., Hass, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubio, J. M., Ribeiro, J. M., Rozas, J., Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguade, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the USA. 107, 27, p. 12168-12173Research output: Contribution to journal › Article › peer-review
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Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis.
Card, D. C., Vonk, F. J., Smallbrugge, S., Casewell, N. R., Wüster, W., Castoe, T. A., Schuett, G. W. & Booth, W., 31 Mar 2021, In: Scientific Reports. 11, 1, 9 p., 7271.Research output: Contribution to journal › Article › peer-review
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Genomic analysis of bacteria in the Acute Oak Decline pathobiome
Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Jan 2019, In: Microbial Genomics. 5, 1, 15 p.Research output: Contribution to journal › Article › peer-review
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Genomic and mechanistic insights into the biodegradation of organic pollutants.
Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224Research output: Contribution to journal › Article › peer-review
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Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions
Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238Research output: Contribution to journal › Article › peer-review
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Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
Malinsky, M., Challis, R. J., Tyers, A. M., Schiffels, S., Terai, Y., Ngatunga, B. P., Miska, E. A., Durbin, R., Genner, M. J. & Turner, G. F., 18 Dec 2015, In: Science. 350, 6267, p. 1493-1498Research output: Contribution to journal › Article › peer-review
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Genomic organisation of the seven ParaHox genes of coelacanths
Mulley, J. F. & Holland, P. W., 1 Sept 2014, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 322, 6, p. 352-358Research output: Contribution to journal › Article › peer-review
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Genomic signatures of admixture and selection are shared among populations of Zaprionus indianus across the western hemisphere
Comeault, A., Kautt, A. F. & Matute, D. R., Dec 2021, In: Molecular Ecology. 30, 23, p. 6193-6210 18 p.Research output: Contribution to journal › Article › peer-review
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Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota
La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.Research output: Contribution to journal › Article › peer-review
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Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).
Nielsen, E. E., Hemmer-Hansen, J., Poulsen, N. A., Loeschcke, V., Moen, T., Johansen, T., Mittelholzer, C., Taranger, G. L., Ogden, R. & Carvalho, G. R., 1 Dec 2009, In: BMC Evolutionary Biology. 9, p. 276Research output: Contribution to journal › Article › peer-review
- E-pub ahead of print
Genomics reveals broad hybridization in deeply divergent Palearctic grass and water snakes (Natrix spp.)
Schöneberg, Y., Winter, S., Arribas, O., Di Nicola, M. R., Master, M., Owens, J. B., Rovatsos, M., Wüster, W., Janke, A. & Fritz, U., 18 Apr 2023, (E-pub ahead of print) In: Molecular Phylogenetics and Evolution. 9 p.Research output: Contribution to journal › Article › peer-review
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Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales
Coupland, K. & Johnson, D. B., 1 Apr 2004, In: Geobiology. 2, 2, p. 77-86Research output: Contribution to journal › Article › peer-review
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Geoengineering: taking control of our planet's climate?
Ridgwell, A., Freeman, C. & Lampitt, R., 13 Sept 2012, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 370, p. 4163-4165Research output: Contribution to journal › Article › peer-review