A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., Navas-Molina, J. A., Janssen, S., Kopylova, E., Vazquez-Baeza, Y., Gonzalez, A., Morton, J. T., Mirarab, S., Xu, Z. Z., Jiang, L., Haroon, M. F., Kanbar, J., Zhu, Q., Song, S. J., Kosciolek, T., Bokulich, N. A., Lefler, J., Brislawn, C. J., Humphrey, G., Owens, S. M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J. A., Clauset, A., Stevens, R. L., Shade, A., Pollard, K. S., Goodwin, K. D., Jansson, J. K., Gilbert, J. A., Knight, R., Agosto Rivera, J. L., Al-Moosawi, L., Alverdy, J., Amato, K. R., Andras, J., Angenent, L. T., Antonopoulos, D. A., Apprill, A., Armitage, D., Ballantine, K., Bárta, J., Baum, J. K., Berry, A., Bhatnagar, A., Bhatnagar, M., Biddle, J. F., Bittner, L., Boldgiv, B., Bottos, E., Boyer, D. M., Braun, J., Brazelton, W., Brearley, F. Q., Campbell, A. H., Caporaso, J. G., Cardona, C., Carroll, J., Cary, S. C., Casper, B. B., Charles, T. C., Chu, H., Claar, D. C., Clark, R. G., Clayton, J. B., Clemente, J. C., Cochran, A., Coleman, M. L., Collins, G., Colwel, R. R., Contreras, M., Crary, B. B., Creer, S., Cristol, D. A., Crump, B. C., Cui, D., Daly, S. E., Davalos, L., Dawson, R. D., Defazio, J., Delsuc, F., Dionisi, H. M., Dominguez-Bello, M. G., Dowell, R., Dubinsky, E. A., Dunn, P. O., Ercolini, D., Espinoza, R. E., Ezenwa, V., Fenner, N., Findlay, H. S., Fleming, I. D., Fogliano, V., Forsman, A., Freeman, C., Friedman, E. S., Galindo, G., Garcia, L., Garcia-Amado, M. A., Garshelis, D., Gasser, R. B., Gerdts, G., Gibson, M. K., Gifford, I., Gill, R. T., Giray, T., Gittel, A., Golyshin, P., Gong, D., Grossart, H.-P., Guyton, K., Haig, S.-J., Hale, V., Hall, R. S., Hallam, S. J., Handley, K. M., Hasan, N. A., Haydon, S. R., Hickman, J. E., Hidalgo, G., Hofmockel, K. S., Hooker, J., Hulth, S., Hultman, J., Hyde, E., Ibáñez-Álamo, J. D., Jastrow, J. D., Jex, A. R., Johnson, L. S., Johnston, E. R., Joseph, S., Jurburg, S. D., Jurelevicius, D., Karlsson, A., Karlsson, R., Kauppinen, S., Kellogg, C. T. E., Kennedy, S. J., Kerkhof, L. J., King, G. M., Kling, G. W., Koehler, A. V., Krezalek, M., Kueneman, J., Lamendella, R., Landon, E. M., Lane-deGraaf, K., LaRoche, J., Larsen, P., Laverock, B., Lax, S., Lentino, M., Levin, I. I., Liancourt, P., Liang, W., Linz, A. M., Lipson, D. A., Liu, Y., Lladser, M. E., Lozada, M., Spirito, C. M., MacCormack, W. P., MacRae-Crerar, A., Magris, M., Martín-Platero, A. M., Martín-Vivaldi, M., Martínez, L. M., Martínez-Bueno, M., Marzinelli, E. M., Mason, O. U., Mayer, G. D., McDevitt-Irwin, J. M., McDonald, J., McGuire, K. L., McMahon, K. D., McMinds, R., Medina, M., Mendelson, J. R., Metcalf, J. L., Meyer, F., Michelangeli, F., Miller, K., Mills, D. A., Minich, J., Mocali, S., Moitinho-Silva, L., Moore, A., Morgan-Kiss, R. M., Munroe, P., Myrold, D., Neufeld, J. D., Ni, Y., Nicol, G. W., Nielsen, S., Nissimov, J. I., Niu, K., Nolan, M. J., Noyce, K., O’Brien, S. L., Okamoto, N., Orlando, L., Ortiz Castellano, Y., Osuolale, O., Oswald, W., Parnell, J., Peralta-Sánchez, J. M., Petraitis, P., Pfister, C., Pilon-Smits, E., Piombino, P., Pointing, S. B., Pollock, F. J., Potter, C., Prithiviraj, B., Quince, C., Rani, A., Ranjan, R., Rao, S., Rees, A. P., Richardson, M., Riebesell, U., Robinson, C., Rockne, K. J., Rodriguezl, S. M., Rohwer, F., Roundstone, W., Safran, R. J., Sangwan, N., Sanz, V., Schrenk, M., Schrenzel, M. D., Scott, N. M., Seger, R. L., Seguin-Orlando, A., Seldin, L., Seyler, L. M., Shakhsheer, B., Sheets, G. M., Shen, C., Shi, Y., Shin, H., Shogan, B. D., Shutler, D., Siegel, J., Simmons, S., Sjöling, S., Smith, D. P., Soler, J. J., Sperling, M., Steinberg, P. D., Stephens, B., Stevens, M. A., Taghavi, S., Tai, V., Tait, K., Tan, C. L., Tas, N., Taylor, D. L., Thomas, T., Timling, I., Turner, B. L., Urich, T., Ursell, L. K., van der Lelie, D., Van Treuren, W., van Zwieten, L., Vargas-Robles, D., Vega Thurber, R., Vitaglione, P., Walker, D. A., Walters, W. A., Wang, S., Wang, T., Weave, T., Webster, N. S., Wehrle, B., Weisenhorn, P., Weiss, S., Werner, J. J., West, K., Whitehead, A., Whitehead, S. R., Whittingham, L. A., Willerslev, E., Williams, A. E., Wood, S. A., Woodhams, D. C., Yang, Y., Zaneveld, J., Zarraonaindia, I., Zhang, Q. & Zhao, H., 23 Tach 2017, Yn: Nature. 551, 7681, t. 457-+

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater

Kevill, J. L., Pellett, C., Farkas, K., Brown, M. R., Bassano, I., Denise, H., McDonald, J. E., Malham, S. K., Porter, J., Warren, J., Evens, N. P., Paterson, S., Singer, A. C. & Jones, D. L., 20 Chwef 2022, Yn: Science of the Total Environment. 808, 151916.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

A multiplex real‐time PCR assay enables simultaneous rapid detection and quantification of bacteria associated with acute oak decline

Crampton, B. G., Plummer, S., Kaczmarek, M., McDonald, J. & Denman, S., Medi 2020, Yn: Plant Pathology. 69, 7, t. 1301-1310 10 t.

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Abundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments—a Review

Hassard, F., Gwyther, C. L., Farkas, K., Andrews, A., Jones, V., Cox, B., Brett, H., Jones, D., McDonald, J. & Malham, S., 1 Tach 2016, Yn: Frontiers in Microbiology.

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Application of ecological and evolutionary theory to microbiome community dynamics across systems

McDonald, J., Marchesi, J. R. & Koskella, B., 23 Rhag 2020, Yn: Proceedings of the Royal Society B: Biological Sciences. 287, 1941, 20202886.

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Bioreduction of Sheep Carcasses Effectively Contains and Reduces Pathogen Levels under Operational and Simulated Breakdown Conditions

Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J. E. & Williams, A. P., 21 Mai 2013, Yn: Environmental Science and Technology. 47, 10, t. 5267–5275

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules

McDonald, J., Larsen, N., Pennington, A., Connolly, J., Wallis, C., Rooks, D. J., Hall, N., McCarthy, A. J. & Allison, H. E., 8 Meh 2016, Yn: PLoS ONE. 11, 6, e0157046.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Composition of the landfill microbial community as determined by application of domian- and group-specific 16s and 18s rRNA-targeted oligonucleotide probes.

McDonald, J. E., Allison, H. E. & McCarthy, A. J., 1 Chwef 2010, Yn: Applied and Environmental Microbiology. 76, 4, t. 1301-1306

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR.(vol 4, 17, 2021)

Farkas, K., Hillary, L. S., Thorpe, J., Walker, D. I., Lowther, J. A., McDonald, J. E., Malham, S. K. & Jones, D. L., 12 Tach 2021, Yn: Methods and Protocols. 4, 4

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Concentration and quantification of SARS-CoV-2 RNA in wastewater using polyethylene glycol-based concentration and qRT-PCR

Farkas, K., Hillary, L., Thorpe, J., Walker, D., Lowther, J. A., McDonald, J., Malham, S. & Jones, D. L., 23 Chwef 2021, Yn: Methods and Protocols. 4, 1, 10 t., 17.

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Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment

Farkas, K., Adriaenssens, E. M., Walker, D. I., McDonald, J., Malham, S. & Jones, D. L., 1 Meh 2019, Yn: Food and Environmental Virology. 11, 2, t. 113-119

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective

Hassard, F., Sharp, J., Taft, H., Le Vay, L., Harris, J., McDonald, J., Tuson, K., Wilson, J., Jones, D. & Malham, S., Meh 2017, Yn: Food and Environmental Virology. 9, 2, t. 123-141

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Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations

Perkins, T. L., Perrow, K. A., Rajko-Nenow, P., Jago, C. F., Jones, D. L., Malham, S. K. & McDonald, J. E., 1 Rhag 2016, Yn: Science of the Total Environment. 572, t. 1645-1652

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Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

McDonald, J. E., Lockhart, R. J., Cox, M. J., Allison, H. E. & McCarthy, A. J., 1 Mai 2008, Yn: Environmental Microbiology. 10, 5, t. 2360-2365

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Developing Skills in Second Year Biological Science Undergraduates

Robinson, R. L. & McDonald, J. E., 1 Gorff 2014, Yn: Bioscience Education. 22, 1, t. 42-53

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Development and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages.

Rooks, D. J., Yan, Y., McDonald, J. E., Woodward, M. J., McCarthy, A. J. & Allison, H. E., 1 Mai 2010, Yn: Environmental Microbiology. 12, 5, t. 1194-1204

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs

Ransom-Jones, E., Jones, D. L., Edwards, A. & McDonald, J. E., 17 Gorff 2014, Yn: Systematic and Applied Microbiology. 37, 7, t. 502-509

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Draft Genome Sequence of Clostridium sp. strain W14A isolated from a cellulose-degrading biofilm in a landfill leachate microcosm

Ransom-Jones, E. & McDonald, J., 22 Medi 2016, Yn: Genome Announcements. 4, 5, e0098516.

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E. coli Is a Poor End-Product Criterion for Assessing the General Microbial Risk Posed From Consuming Norovirus Contaminated Shellfish

Sharp, J. H., Clements, K., Diggens, M., McDonald, J. E., Malham, S. K. & Jones, D. L., 19 Chwef 2021, Yn: Frontiers in Microbiology. 12, t. 608888

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Enhancing first year undergraduate student engagement via the School of Biological Sciences tutorials module

McDonald, J. E. & Robinson, R. L., 1 Gorff 2014, Yn: Bioscience Education. 22, 1, t. 54-69

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Evaluating agar-plating and dilution-to-extinction isolation methods for generating oak-associated microbial culture collections

Ordonez Ordonez, A., Hussain, U., Cambon, M., Golyshin, P., Downie, J. & McDonald, J., 11 Chwef 2025, Yn: ISME Communications. 5, 1, ycaf019.

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Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment

Farkas, K., Hassard, F., McDonald, J., Malham, S. & Jones, D., 24 Ion 2017, Yn: Frontiers in Microbiology. 6, t. 1-12 53.

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Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples

Farkas, K., Peters, D. E., McDonald, J., de Rougemont, A., Malham, S. & Jones, D., Medi 2017, Yn: Food and Environmental Virology. 9, 3, t. 342-349

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Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue

Broberg, M. & McDonald, J., 5 Chwef 2019, Yn: Methods and Protocols. 2, 1, 15.

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Fifty important research questions in microbial ecology

Antwis, R. E., Griffiths, S. M., Harrison, X. A., Aranega-Bou, P., Arce, A., Bettridge, A. S., Brailsford, F., de Menezes, A., Devaynes, A., Forbes, K. M., Fry, E. L., Goodhead, I., Haskell, E., Heys, C., James, C., Johnston, S. R., Lewis, G. R., Lewis, Z., Macey, M. C., McCarthy, A., McDonald, J., Mejia-Florez, N. L., O'Brien, D., Orland, C., Pautasso, M., Reid, W. D. K., Robinson, H. A., Wilson, K. & Sutherland, W. J., Mai 2017, Yn: Fems Microbiology Ecology. 93, 5, fix044.

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Genomic analysis of bacteria in the Acute Oak Decline pathobiome

Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Ion 2019, Yn: Microbial Genomics. 5, 1, 15 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

High-Throughput Method for Rapid Induction of Prophages from Lysogens and Its Application in the Study of Shiga Toxin-Encoding Escherichia coli Strains

McDonald, J. E., Smith, D. L., Fogg, P. C., McCarthy, A. J. & Allison, H. E., 1 Ebr 2010, Yn: Applied and Environmental Microbiology. 76, 7, t. 2360-2365

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Host–microbiota–insect interactions drive emergent virulence in a complex tree disease

Doonan, J., Broberg, M., Denman, S. & McDonald, J., 26 Awst 2020, Yn: Proceedings of the Royal Society B: Biological Sciences. 287, 1933, 20200956.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Identification of Armillaria species on declined oak in Britain: implications for oak health

Denman, S., Barrett, G., Kirk, S. A., McDonald, J. & Coetzee, M. P. A., 7 Ion 2017, Yn: Forestry. 90, 1, t. 148-161

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Impact of Sediment Concentration on the Survival of Wastewater-Derived blaCTX-M-15-Producing E. coli, and the Implications for Dispersal into Estuarine Waters

Bashawri, Y. M. A., Robins, P., Jones, D. L., McDonald, J., Cooper, D. & Williams, P., 19 Hyd 2020, Yn: International Journal of Environmental Research and Public Health. 17, 20, 15 t., 7608.

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Impact of climate change on UK estuaries: A review of past trends and potential projections

Robins, P. E., Skov, M. W., Lewis, M. J., Gimenez, L., Davies, A. G., Malham, S. K., Neill, S. P., McDonald, J. E., Whitton, T. A., Jackson, S. E. & Jago, C. F., 17 Rhag 2015, Yn: Estuarine, Coastal and Shelf Science. 169, t. 119-135

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Importance of Micromonospora spp. as colonizers of cellulose in freshwater lakes as demonstrated by quantitative reverse transcriptase PCR of 16S rRNA

de Menezes, A. B., McDonald, J. E., Allison, H. E. & McCarthy, A. J., Mai 2012, Yn: Applied and Environmental Microbiology. 78, 9, t. 3495-9 5 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Improving quantification of bivalve larvae in mixed plankton samples using qPCR: A case study on Mytilus edulis

Alexander, J., Malham, S., Smyth, D., Webb, J., Fidler, D., Bayford, P., McDonald, J. & Le Vay, L., 15 Chwef 2021, Yn: Aquaculture. 532, 736003.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

Broberg, M., Doonan, J., Mundt, F. & McDonald, J., 30 Ion 2018, Yn: Microbiome. 6, 21.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline

Denman, S., Plummer, S., Peace, A. & McDonald, J., 1 Hyd 2016, Yn: Systematic and Applied Microbiology. 39, 7, t. 484-490

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass- Degrading Diversity Emma

Ransom-Jones, E., McCarthy, A., Haldenby, S., Doonan, J. & McDonald, J., Awst 2017, Yn: mSphere. 2, 4, e00300.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Metagenomic approaches to the discovery of cellulases

Rooks, D. J., McDonald, J. E. & McCarthy, A. J., 2012, Yn: Methods in Enzymology. 510, t. 375-94 20 t.

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Methods for the isolation of cellulose-degrading microorganisms

McDonald, J. E., Rooks, D. J. & McCarthy, A. J., 2012, Yn: Methods in Enzymology. 510, t. 349-74 26 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline

Denman, S., Doonan, J., Ransom-Jones, E., Broberg, M., Plummer, S., Kirk, S. A., Scarlett, K., Griffiths, A., Kaczmarek, M., Foster, J., Peace, A., Golyshin, P., Hassard, F., Brown, N., Kenny, J. G. & McDonald, J., 2018, Yn: The ISME Journal. 12, t. 386-399

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Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes.

McDonald, J. E., De Menezes, A. B., Allison, H. E. & McCarthy, A. J., 1 Awst 2009, Yn: Applied and Environmental Microbiology. 75, 15, t. 5148-5152

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Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK

Hillary, L. S., Farkas, K., Maher, K. H., Lucaci, A., Thorpe, J., Distaso, M. A., Gaze, W. H., Paterson, S., Burke, T., Connor, T. R., McDonald, J. E., Malham, S. K. & Jones, D. L., 15 Gorff 2021, Yn: Water Research. 200, t. 117214 1 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Multi-scale influences on Escherichia coli concentrations in shellfish: From catchment to estuary

Malham, S., Taft, H., Farkas, K., Ladd, C., Seymour, M., Robins, P., Jones, D. L., McDonald, J., Le Vay, L. & Jones, L., 1 Chwef 2025, Yn: Environmental Pollution. 125476.

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Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline

Kaczmarek, M., Mullett, M. S., McDonald, J. & Denman, S., 1 Meh 2017, Yn: PLoS ONE. 12, 6, e0178390.

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Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment

Hassard, F., Andrews, A., Jones, D. L., Parsons, L., Jones, V., Cox, B. A., Daldorph, P., Brett, H., McDonald, J. & Malham, S., Hyd 2017, Yn: Frontiers in Microbiology. 8, 1996.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

RNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels

Hillary, L. S., Adriaenssens, E. M., Jones, D. L. & McDonald, J. E., 8 Ebr 2022, Yn: ISME Communications. 2, 1, t. 34 34.

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Seasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses

Farkas, K., Marshall, M., Cooper, D., McDonald, J. E., Malham, S. K., Peters, D. E., Maloney, J. D. & Jones, D. L., Tach 2018, Yn: Environmental Science and Pollution Research. 25, 33, t. 33391-33401

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Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters

Malham, S., Farkas, K., McDonald, J., Jones, D. L., Cooper, D. & de Rougemont, A., 1 Medi 2018, Yn: Science of the Total Environment. 634, t. 1174 1183 t.

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Sediment Composition Influences Spatial Variation in the Abundance of Human Pathogen Indicator Bacteria within an Estuarine Environment

Perkins, T. L., Clements, K., Baas, J. H., Jago, C. F., Jones, D. L., Malham, S. K. & McDonald, J. E., 14 Tach 2014, Yn: PLoS ONE. 9, 11

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Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation

George, P. B. L., Fidler, D. B., Van Nostrand, J. D., Atkinson, J. A., Mooney, S. J., Creer, S., Griffiths, R. I., McDonald, J. E., Robinson, D. A. & Jones, D. L., 14 Medi 2021, Yn: Frontiers in Microbiology. 12, 735022.

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Soil metabolomics - current challenges and future perspectives

Brown, R., Reay, M. K., Centler, F., Chadwick, D., Bull, I. D., McDonald, J., Evershed, R. P. & Jones, D. L., 1 Meh 2024, Yn: Soil Biology and Biochemistry. 109382.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Spatial patterns and environmental constraints on ecosystem services at a catchment scale

Emmett, B., Cooper, D., Smart, S., Jackson, B., Thomas, A., Cosby, B., Evans, C., Glanville, H., McDonald, J., Malham, S., Marshall, M., Jarvis, S., Rajko-Nenow, P., Webb, G. P., Ward, S., Rowe, E., Jones, L., Vanbergen, E. J., Keith, A., Carter, H., Pereira, M. G., Hughes, S., Lebron, I., Wade, A. & Jones, D., 1 Rhag 2016, Yn: Science of the Total Environment. 572, t. 1586-1600

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems

Potter, C., Freeman, C., Golyshin, P., Ackerman, G., Fenner, N., McDonald, J., Ehbair, A., Jones, T., Murphy, L. & Creer, S., Medi 2017, Yn: Scientific Reports. 7, 11314.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Survival of Brenneria goodwinii and Gibbsiella quercinecans, Associated with Acute Oak Decline, in Rainwater and Forest Soil

Pettifor, B. J., Doonan, J., Denman, S. & McDonald, J., Maw 2020, Yn: Systematic and Applied Microbiology. 43, 2

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Taxonomic description and genome sequence of Anaerorudis cellulosivorans gen. Nov. sp. nov., a novel cellulose- and Xylan-degrading bacterium of the Bacteroidota phylum isolated from a lab-scale methanogenic landfill bioreactor digesting municipal solid waste

El Houari, A., Carpenter, M., Chaplin, D., Golyshin, P. & McDonald, J., 1 Maw 2025, Yn: Systematic and Applied Microbiology. 49, 2, 126590.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria

Ransom-Jones, E., Jones, D., McCarthy, A. J. & McDonald, J. E., Chwef 2012, Yn: Microbial Ecology. 63, 2, t. 267-281

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters

Malham, S. K., Rajko-Nenow, P., Howlett, E., Tuson, K. E., Perkins, T. L., Pallett, D. W., Wang, H., Jago, C. F., Jones, D. L. & McDonald, J. E., 7 Gorff 2014, Yn: Environmental Science: Processes and Impacts. 16, t. 2145-2155

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline

Doonan, J., Denman, S., Gertler, C., Pachebat, J. A., Golyshin, P. N. & McDonald, J. E., 1 Ion 2015, Yn: Journal of Applied Microbiology. 118, 1, t. 193-201 9 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters

McDonald, J. E., Houghton, J. N., Rooks, D. J., Allison, H. E. & McCarthy, A. J., 1 Ebr 2012, Yn: Environmental Microbiology. 14, 4, t. 1077-1087

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity

Adriaenssens, E. M., Farkas, K., McDonald, J. E., Jones, D. L., Allison, H. E. & McCarthy, A. J., 15 Medi 2021, Yn: Water Research. 203

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Two-Step Concentration of Complex Water Samples for the Detection of Viruses

Farkas, K., McDonald, J., Malham, S. & Jones, D. L., 10 Medi 2018, Yn: Methods and Protocols. 1, 3, 35.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges

Winterbourn, J., Clements, K., Lowther, J. A., Malham, S., McDonald, J. & Jones, D., 15 Tach 2016, Yn: Water Research. 105, November, t. 241-250

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Using chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site

Rhymes, J. M., Rhymes, J., Jones, L., Lapworth, D. J., White, D., Fenner, N., McDonald, J. E. & Perkins, T. L., 20 Ion 2015, Yn: Science of the Total Environment. 511, t. 703-710

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Viral indicators for tracking domestic wastewater contamination in the aquatic environment

Farkas, K., Walker, D., Adriaenssens, E., McDonald, J., Hillary, L., Malham, S. & Jones, D. L., 15 Awst 2020, Yn: Water Research. 181, 115926.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19

Farkas, K., Hillary, L., Malham, S., McDonald, J. & Jones, D. L., Hyd 2020, Yn: Current Opinion in Environmental Science & Health. 17, t. 14-20 7 t.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl › adolygiad gan gymheiriaid

Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19

Jones, D. L., Baluja, M. Q., Graham, D. W., Corbishley, A., McDonald, J. E., Malham, S. K., Hillary, L. S., Connor, T. R., Gaze, W. H., Moura, I. B., Wilcox, M. H. & Farkas, K., 20 Rhag 2020, Yn: Science of the Total Environment. 749, 141364.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid

Using a systematic approach to synthesize existing knowledge on Gymnopus fusipes ( syn . Collybia fusipes ), the cause of Collybia root rot

Pettifor, B., McDonald, J. & Denman, S., Hyd 2022, Yn: Forest Pathology. 52, 5, t. 1 - 14 e12766.

Allbwn ymchwil: Cyfraniad at gyfnodolyn › Erthygl adolygu › adolygiad gan gymheiriaid