School of Environmental & Natural Sciences

  1. Article › Research › Peer-reviewed
  2. Published

    Biochemical plasticity of the Escherichia coli CRISPR Cascade revealed by in vitro reconstitution of Cascade activities from purified Cas proteins

    Lemak, S., Brown, G., Makarova, K. S., Koonin, E. V. & Yakunin, A., 2024, In: Febs Journal. p. 1-18 18 p.

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring.

    Ruzzante, D. E., Mariani, S., Bekkevold, D., Andre, C., Mosegaard, H., Clausen, L. A., Dahlgren, T. G., Hutchinson, W. F., Hatfield, E. M., Torstensen, E., Brigham, J., Simmonds, E. J., Laikre, L., Larsson, L. C., Stet, R. J., Ryman, N. & Carvalho, G. R., 22 Jun 2006, In: Proceedings of The Royal Society B - Biological Sciences. 273, 1593, p. 1459-1464

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Biodegradable and Biocompatible PDLLA-PEG1k-PDLLA Diacrylate Macromers: Synthesis, Characterisation and Preparation of Soluble Hyperbranched Polymers and Crosslinked Hydrogels

    Hughes, A., Tai, H., Tochwin, A. & Wang, W., 20 Apr 2017, In: Processes. 5, 2, 18.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Biodegradable plastic mulch films increase yield and promote nitrogen use efficiency in organic horticulture.

    Samphire, M., Chadwick, D. & Jones, D. L., 26 May 2023, In: Frontiers in Agronomy. 5

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Biodegradation kinetics and sorption reactions of three differently charged amino acids in soil and their effects on plant organic nitrogen availability

    Hodge, A. & Jones, D. L., 1 Aug 1999, In: Soil Biology and Biochemistry. 31, 9, p. 1331-1342

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Biodegradation of Different Genotypes of Miscanthus by Wood Rot Fungi

    Baker, P., Winters, A. & Hale, M., 30 Mar 2016, In: BioResources. 11, 2, p. 4379-4391 12 p.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Biodegradation of Polyactic Acid and starch composites in compost and soil

    Wilfred, O., Tai, H., Marriott, R., Liu, Q., Tverezovskiy, V., Curling, S., Fan, Z. & Wang, W., 25 Oct 2018, In: International Journal of Nano Research. 1, 2, p. 1-11

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Biodegradation of low molecular weight organic acids in a limed forest soil.

    Van Hees, P. A., Jones, D. L. & Godbold, D. L., 1 Jul 2003, In: Water, Air and Soil Pollution: Focus. 3, 4, p. 121-144

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Biodegradation of low molecular weight organic acids in coniferous forest podzolic soils.

    Van Hees, P. A., Jones, D. L. & Godbold, D. L., 1 Sept 2002, In: Soil Biology and Biochemistry. 34, 9, p. 1261-1272

    Research output: Contribution to journalArticlepeer-review

  11. Published

    Biodiversity Conservation: Uncertainty in predictions of extinction risk/Effects of changes in climate and land use/Climate change and extinction risk (reply)

    Thomas, C. D., Williams, S. E., Cameron, A., Green, R. E., Bakkenes, M., Beaumont, L. J., Collingham, Y. C., Erasmus, B. F. N., Ferreira De Sequeira, M., Grainger, A., Hannah, L., Hughes, L., Huntley, B., Van Jaarsveld, A. S., Midgley, G., Miles, L., Ortega-Huerta, M. A., Peterson, A. T. & Phillips, O. L., Jul 2004, In: Nature. 430

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy.

    Kimura, S., Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Aug 2011, In: Environmental Microbiology. 13, 8, p. 2092-2104

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Biodiversity and interactions of acidophiles: Key to understanding and optimizing microbial processing of ores and concentrates.

    Johnson, D. B., 1 Dec 2008, In: Transactions of Nonferrous Metals Society of China. 18, 6, p. 1367-1373

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Biodiversity conservation as a promising frontier for behavioural science

    Nielsen, K. S., Marteau, T. M., Bauer, J. M., Bradbury, R. B., Broad, S., Burgess, G., Burgman, M. A., Byerly, H., Clayton, S., Espelosin, D., Ferraro, P. J., Fisher, B., Garnett, E. E., Jones, J. P. G., Otieno, M., Polasky, S., Ricketts, T. H., Trevelyan, R., van der Linden, S., Verissimo, D. & Balmford, A., May 2021, In: Nature Human Behaviour. 5, 5, p. 550-556

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Biodiversity for biocatalysis: A review of the α/β-hydrolase fold superfamily of esterases-lipases discovered in metagenomes

    Ferrer, M., Bargiela, R., Martínez-Martínez, M., Mir, J., Koch, R., Golyshina, O. & Golyshin, P., 1 Mar 2016, In: Biocatalysis and Biotransformation . 33, 5-6, p. 235-249

    Research output: Contribution to journalArticlepeer-review

  16. Published

    Biodiversity of acidophilic prokaryotes

    Hallberg, K. B. & Johnson, D. B., 1 Jan 2001, In: Advances in Applied Microbiology. 49, p. 37-84

    Research output: Contribution to journalArticlepeer-review

  17. Published

    Biogeochemical tags in fish: predicting spatial variations in strontium and manganese in Salmo trutta scales using stream water geochemistry

    Ramsay, A. L., Hughes, R. N., Chenery, S. R. & McCarthy, I. D., 11 Nov 2014, In: Canadian Journal of Fisheries and Aquatic Sciences. 72, 3, p. 422-433

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.

    Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Biogeography of the Indo-Australian Archipelago

    De Bruyn, M., Carvalho, G. R., Lohman, D. J., de Bruyn, M., Page, T., von Rintelen, K., Hall, R., Ng, P. K., Shih, H. T. & von Rintelen, T., 1 Dec 2011, In: Annual Review of Ecology, Evolution, and Systematics. 42, p. 205-226

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Biohydrometallurgy and the environment: Intimate and important interplay

    Johnson, D. B., 1 Sept 2006, In: Hydrometallurgy. 83, 1-4, p. 153-166

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Bioleaching of Transition Metals From Limonitic Laterite Deposits and Reassessment of the Multiple Roles of Sulfur-Oxidizing Acidophiles in the Process

    Johnson, D. B., Smith, S. & Santos, A. L., 26 Jul 2021, In: Frontiers in Microbiology. 12, 703177.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Bioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite

    Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Bioleaching of pyrite at low pH and low redox potentials by novel mesophilic Gram-positive bacteria.

    Yahya, A. & Johnson, D. B., 1 Feb 2002, In: Hydrometallurgy. 63, 2, p. 181-188

    Research output: Contribution to journalArticlepeer-review

  24. Published

    Biological characteristics of praziquantel-resistant and -susceptible isolates of Schistosoma mansoni.

    Liang, Y. S., Coles, G. C., Dai, J. R., Zhu, Y. C. & Doenhoff, M. J., 1 Oct 2001, In: Annals of Tropical Medicine and Parasitology. 95, 7, p. 715-723

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Biological knowledge shortfalls impede conservation efforts in poorly studied taxa—A case study of Laboulbeniomycetes

    Haelewaters, D., Matthews, T. J., Wayman, J. P., Cazabonne, J., Heyman, F., Quandt, C. A. & Martin, T. E., Jan 2024, In: Journal of Biogeography. 51, 1, p. 29-39 11 p.

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Biological manganese removal from acid mine drainage in constructed wetlands and prototype bioreactors.

    Hallberg, K. B. & Johnson, D. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 115-124

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Biological roles of translin and translin-associated factor-X: RNA metabolism comes to the fore.

    Mcfarlane, R. J., Jaendling, A. & McFarlane, R. J., 15 Jul 2010, In: Biochemical Journal. 429, 2, p. 225-234

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Biologically active cyclopropanes and cyclopropenes

    Salaun, J. & Baird, M., 1995, In: Current Medicinal Chemistry. 2, p. 511-542

    Research output: Contribution to journalArticlepeer-review

  29. Published

    Biologically driven DOC release from peatlands during recovery from acidification

    Kang, H., Kwon, M. J., Kim, S., Lee, S., Jones, T. G., Johncock, A. C., Haraguchi , A. & Freeman, C., 18 Sept 2018, In: Nature Communications. 9, 3807.

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Biologically important artificial light at night on the seafloor

    Davies, T. W., McKee, D., Fishwick, J., Tidau, S. & Smyth, T., 27 Jul 2020, In: Scientific Reports. 10, 1, 12545.

    Research output: Contribution to journalArticlepeer-review

  31. Published

    Biologically inspired herding of animal groups by robots

    King, A. J., Portugal, S. J., Strombom, D., Mann, R. P., Carrillo, J. A., Kalise, D., Croon, G. D., Barnett, H., Scerri, P., Gross, R., Chadwick, D. & Papadopoulou, M., 1 Feb 2023, In: Methods in Ecology and Evolution. 14, 2, p. 478-486 9 p.

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Biologically-induced precipitation of aluminium in synthetic acid mine water

    Falagan Rodriguez, C., Yusta, I. & Johnson, B., 15 May 2017, In: Minerals Engineering. 106, p. 79-85

    Research output: Contribution to journalArticlepeer-review

  33. Published

    Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments

    Golyshina, O., Kublanov, I. V., Hai, T., Korzhenkov, A. A., Lunsdorf, H., Nechitaylo, T. Y., Toshchakov, S. V. & Golyshin, P., Dec 2016, In: Scientific Reports. 6, 39034.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Biomimetic model studies towards ptilomycalin A

    Murphy, P. J., Williams, H. L., Hibbs, D. E., Hursthouse, M. B. & Malik, K. M. A., 10 Jun 1996, In: Tetrahedron. 52, 24, p. 8315-8332 18 p.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Biomining - biotechnologies for extracting and recovering metals from ores and waste materials

    Johnson, D. B., 6 May 2014, In: Current Opinion in Biotechnology. 30, p. 24-31

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Biomining goes underground

    Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Biomining in reverse gear: using bacteria to extract metals from oxidized ores

    Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Biomining: an Established and Dynamic Biotechnology

    Johnson, D. B., 1 Dec 2012, In: Microbiology Indonesia. 6, 4, p. 189-193

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Biooxidation of pyrite by defined mixed cultures of moderately thermophilic acidophiles in pH-controlled bioreactors: Significance of microbial interactions.

    Okibe, N. & Johnson, D. B., 5 Sept 2004, In: Biotechnology and Bioengineering. 87, 5, p. 574-583

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Biophysical modelling of intra-ring variations in tracheid features and wood density of Pinus pinaster trees exposed to seasonal droughts

    Wilkinson, S., Ogee, J., Domec, J. C., Rayment, M. & Wingate, L., 12 Mar 2015, In: Tree Physiology. 35, 3, p. 305-318

    Research output: Contribution to journalArticlepeer-review

  41. Published

    Bioplastic (PHBV) addition to soil alters microbial community structure and negatively affects plant-microbial metabolic functioning in maize

    Brown, R. W., Chadwick, D. R., Zang, H., Graf, M., Liu, X., Wang, K., Greenfield, L. M. & Jones, D. L., 5 Jan 2023, In: Journal of Hazardous Materials. 441, 129959.

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Bioprospecting reveals class III ω-transaminases converting bulky ketones and environmentally relevant polyamines

    Coscolín, C., Katzke, N., Garcia-Moyano, A., Navarro-Fernández, J., Almendral, D., Martinez-Martinez, M., Bollinger, A., Bargiela, R., Gerler, C., Chernikova, T. N., Rojo, D., Barbas, C., Tran, H., Golyshina, O. V., Koch, R., Yakimov, M. M., Bjerga, G. E. K., Golyshin, P. N., Jaeger, K.-E. & Ferrer, M., 9 Jan 2019, In: Applied and Environmental Microbiology. 85, 2, e02404-18.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Bioreduction of Sheep Carcasses Effectively Contains and Reduces Pathogen Levels under Operational and Simulated Breakdown Conditions

    Golyshin, P., Gwyther, C. L., Jones, D. L., Golyshin, P. N., Edwards-Jones, G., McKillen, J., McNair, I., McDonald, J. E. & Williams, A. P., 21 May 2013, In: Environmental Science and Technology. 47, 10, p. 5267–5275

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Bioreductive Dissolution as a Pretreatment for Recalcitrant Rare-Earth Phosphate Minerals Associated with Lateritic Ores

    Nancucheo, I., Oliveira, G., Lopes, M. & Johnson, D. B., 26 Feb 2019, In: Minerals. 9, 3, 136.

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Bioremediation of Poly-Aromatic Hydrocarbon (PAH)-Contaminated Soil by Composting.

    Loick, N., Hobbs, P. J., Hale, M. D. & Jones, D. L., 1 Apr 2009, In: Critical Reviews in Environmental Science and Technology. 39, 4, p. 271-332

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Bioremediation of Southern Mediterranean oil polluted sites comes of age

    Daffonchio, D., Ferrer, M., Mapelli, F., Cherif, A., Lafraya, A., Malkawi, H. I., Yakimov, M. M., Abdel-Fattah, Y. R., Blaghen, M., Golyshin, P. N., Kalogerakis, N., Boon, N., Magagnini, M. & Fava, F., 25 Sept 2013, In: New Biotechnology. 30, 6, p. 743-748

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Biosensor reporting of root exudation from Hordeum vulgare in relation to shoot nitrate concentration.

    Darwent, M. J., Paterson, E., McDonald, A. J. & Tomos, A. D., 1 Jan 2003, In: Journal of Experimental Botany. 54, 381, p. 325-334

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Bioshale FP6 European project: Exploiting black shale ores using biotechnologies?

    d'Hughes, P., Norris, P. R., Hallberg, K. B., Sanchez, F., Langwaldt, J., Grotowski, A., Chmielewski, T. & Groudev, S., 1 Jan 2008, In: Minerals Engineering. 21, 1, p. 111-120

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Biosynthesis of Zinc Sulfide Quantum Dots Using Waste Off-Gas from Metal Bioremediation Process

    Roussel, J., Murray, A. J., Rolley, J., Johnson, D. B. & Macaskie, L. E., Nov 2015, In: Advanced Materials Research. 1130, p. 555-559

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Biosynthesis of zinc sulfide quantum dots using waste off-gas from a metal bioremediation process

    Murray, A. J., Roussel, J., Rolley, J., Woodhall, F., Mikheenko, I. P., Johnson, D. B., Gomez-Bolivar, J., Merroun, M. L. & Macaskie, L. E., 2017, In: RSC Advances. 7, 35, p. 21484-21491

    Research output: Contribution to journalArticlepeer-review

  51. Published

    Bis(triphenylphosphoranylidene)ammonium iodide.

    Beckett, M. A., Horton, P. N., Hursthouse, M. B. & Timmis, J. L., 1 Feb 2010, In: Acta Crystallographica Section E: Structure Reports Online. 66, 2, p. o319-U2063

    Research output: Contribution to journalArticlepeer-review