School of Environmental & Natural Sciences

  1. Published

    Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales

    Coupland, K. & Johnson, D. B., 1 Apr 2004, In: Geobiology. 2, 2, p. 77-86

    Research output: Contribution to journalArticlepeer-review

  2. Published

    Genus II. Leptospirillum

    Johnson, D. B., Boone, D. R. (ed.) & Castenholtz, R. W. (ed.), 1 Jan 2001, Bergey's Manual of Systematic Bacteriology: Archaea and the Deeply Branching and Phototrophic Bacteria v. 1. 2001 ed. Springer, p. 453-457

    Research output: Chapter in Book/Report/Conference proceedingChapter

  3. E-pub ahead of print

    Genomics reveals broad hybridization in deeply divergent Palearctic grass and water snakes (Natrix spp.)

    Schöneberg, Y., Winter, S., Arribas, O., Di Nicola, M. R., Master, M., Owens, J. B., Rovatsos, M., Wüster, W., Janke, A. & Fritz, U., 18 Apr 2023, (E-pub ahead of print) In: Molecular Phylogenetics and Evolution. 9 p.

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

    Nielsen, E. E., Hemmer-Hansen, J., Poulsen, N. A., Loeschcke, V., Moen, T., Johansen, T., Mittelholzer, C., Taranger, G. L., Ogden, R. & Carvalho, G. R., 1 Dec 2009, In: BMC Evolutionary Biology. 9, p. 276

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

    La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Genomic signatures of admixture and selection are shared among populations of Zaprionus indianus across the western hemisphere

    Comeault, A., Kautt, A. F. & Matute, D. R., Dec 2021, In: Molecular Ecology. 30, 23, p. 6193-6210 18 p.

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Genomic organisation of the seven ParaHox genes of coelacanths

    Mulley, J. F. & Holland, P. W., 1 Sept 2014, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 322, 6, p. 352-358

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

    Malinsky, M., Challis, R. J., Tyers, A. M., Schiffels, S., Terai, Y., Ngatunga, B. P., Miska, E. A., Durbin, R., Genner, M. J. & Turner, G. F., 18 Dec 2015, In: Science. 350, 6267, p. 1493-1498

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Genomic insights into oil biodegradation in marine systems.

    Golyshin, P., Martins dos Santos, V. A., Yakimov, M. M., Timmis, K. N., Golyshin, P. N. & Diaz, E. (ed.), 1 Jan 2008, Microbial Biodegradation: Genomics and Molecular Biology. 2008 ed. Caister Academic Press, p. 269-296

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. Published

    Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions

    Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238

    Research output: Contribution to journalArticlepeer-review

  11. Published

    Genomic and mechanistic insights into the biodegradation of organic pollutants.

    Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Genomic analysis of bacteria in the Acute Oak Decline pathobiome

    Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Jan 2019, In: Microbial Genomics. 5, 1, 15 p.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis.

    Card, D. C., Vonk, F. J., Smallbrugge, S., Casewell, N. R., Wüster, W., Castoe, T. A., Schuett, G. W. & Booth, W., 31 Mar 2021, In: Scientific Reports. 11, 1, 9 p., 7271.

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

    Kirkness, E. F., Hass, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubio, J. M., Ribeiro, J. M., Rozas, J., Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguade, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the USA. 107, 27, p. 12168-12173

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

    Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Jul 2006, In: Nature Biotechnology. 24, 8, p. 997-1004 8 p.

    Research output: Contribution to journalArticlepeer-review

  16. Published

    Genome sequence of the nematode C-elegans: A platform for investigating biology

    C. elegans sequencing consortium & Smith, A., 11 Dec 1998, In: Science. 282, 5396, p. 2012-2018

    Research output: Contribution to journalReview articlepeer-review

  17. Published

    Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

    Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

    Hargreaves, A. D., Zhou, L., Christensen, J., Marletaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Seriwaka, K., Fox, B. A., Taylor, W. R., Mulley, J., Zhang, G., Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America: PNAS. 114, 29, p. 7677–7682

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

    Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

    Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Genome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3

    Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Genome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23T

    Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

    Research output: Contribution to journalArticlepeer-review

  24. Published

    Genome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix

    Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

    Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution

    Dittrich, C., Hoelzl, F., Smith, S., Fouilloux, C. A., Parker, D. J., O'Connell, L. A., Knowles, L. S., Hughes, M., Fewings, A., Morgan, R., Rojas, B. & Comeault, A. A., 5 Jun 2024, In: Genome Biology and Evolution. 16, 6

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Genome Analysis of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans CF27

    Talla, E., Hedrich, S., Ji, B. Y., Johnson, D. B. & Bonnefoy, V., 1 Oct 2013, In: Advanced Materials Research. 825, p. 145-148

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

    Alonso, S., Santiago, G., Cea-Rama, I., Fernandez-Lopez, L., Coscolín, C., Modregger, J., Ressmann, A. K., Martinez-Martinez, M., Marrero, H., Bargiela, R., Pita, M., Gonzalez-Alfonso, J. L., Briand, M. L., Rojo, D., Barbas, C., Plou, F. J., Golyshin, P., Shahgaldian, P., Sanz-Aparicio, J., Guallar, V. & Ferrer, M., Mar 2020, In: Nature Catalysis. 3, 3, p. 319-328

    Research output: Contribution to journalArticlepeer-review

  29. Published

    Genetic variation in fibre flax varieties grown in North Wales.

    Bennett, S. J., Dimmock, J. P. & Wright, D., 1 Jan 2004, p. 491-492.

    Research output: Contribution to conferencePaper

  30. Published

    Genetic tests for ecological and allopatric speciation in Anoles on an Island Archipelago.

    Thorpe, R. S., Surget-Groba, Y. & Johansson, H., 29 Apr 2010, In: PLOS Genetics. 6, 4, p. e1000929

    Research output: Contribution to journalArticlepeer-review

  31. Published

    Genetic structure of Carcinus maenas within its native range: larval dispersal and oceanographic variability.

    Domingues, C. P., Creer, S., Taylor, M. I., Queiroga, H. & Carvalho, G. R., 14 Jul 2010, In: Marine Ecology Progress Series. 410, p. 111-123

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Genetic resistance to scrapie in a flock of Welsh mountain sheep.

    Lonyong, J. D., Pritchard, T. C. & Ap Dewi, I., 1 Jan 2004, p. 226.

    Research output: Contribution to conferencePaper

  33. Published

    Genetic population structure indicates sympatric speciation of Lake Malawi pelagic cichlids.

    Shaw, P. W., Turner, G. F., Idid, M. R., Robinson, R. L. & Carvalho, G. R., 22 Nov 2000, In: Proceedings of The Royal Society B - Biological Sciences. 267, 1459, p. 2273-2280

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Genetic polymorphism in the visceralizing gene sequence of Leishmania Tropica isolated from the soldiers returning from Iraq.

    Ghosh, K., Mendez, J., Braig, H. R. & Weina, P. J., 1 Dec 2008, p. 925.

    Research output: Contribution to conferencePaper

  35. Published

    Genetic parameters of wood properties in Picea abies.

    Cahalan, C. M., Hannrup, B., Cahalan, C., Chantre, G., Grabner, M., Karlsson, B., Le Bayon, I., Muller, U., Pereira, H., Rodrigues, J. C., Rosner, S., Rozenberg, P., Wilhelmsson, L. & Wimmer, R., 11 Jun 2001.

    Research output: Contribution to conferencePaper

  36. Published

    Genetic parameters of weights, ultrasonic muscle and fat depths, maternal effects and reproductive traits in Welsh Mountain sheep

    Ap Dewi, I., Saatci, M. & Ulutas, Z., 1 Jun 2002, In: Animal Science. 74, 3, p. 399-408

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Genetic parameters of growth and wood quality traits in Picea abies.

    Cahalan, C. M., Hannrup, B., Cahalan, C., Chantre, G., Grabner, M., Karlsson, B., Le Bayon, I., Lloyd-Jones, G., Muller, U., Pereira, H., Rodrigues, J. C., Rosner, S., Rozenberg, P., Wilhelmsson, L. & Wimmer, R., 1 Feb 2004, In: Scandinavian Journal of Forest Research. 19, 1, p. 14-29

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Genetic parameters from univariate and bivariate analysis of egg and weight traits in Japanese quail.

    Omed, H., Saatci, M., Omed, H. M. & Ap Dewi, I., 1 Feb 2006, In: Poultry Science. 85, 2, p. 185-190

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Genetic organization of IncP-7 TOL plasmid pWW53 and the movement of its residing transposons.

    Yano, H., Garruto, C., Sota, M., Ohtsubo, Y., Nagata, Y. J., Zylstra, G. J., Williams, P. A. & Tsuda, M., 1 Mar 2007, In: Plasmid. 57, 2, p. 231

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Genetic markers in biomonitoring programmes: providing a population structure framework for data interpretation.

    Tysklind, N., Lyons, B. P., Taylor, M. I., McCarthy, I. D. & Carvalho, G. R., 1 Jan 2008.

    Research output: Contribution to conferencePaper

  41. Published

    Genetic management of the red squirrel, Sciurus vulgaris: a practical approach to regional conservation

    Ogden, R., Shuttleworth, C., McEwing, R. & Cesarini, S., 26 Oct 2005, In: Conservation Genetics. 6, p. 511-525

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Genetic improvement of wood quality: improving selection efficiency for different end uses.

    Cahalan, C. M., Lloyd-Jones, G., Mayhead, G. J., Snell, R., Hannrup, B., Karisson, B., Plomion, C., Rozenberg, P., Grabner, M., Rosner, S., Wimmer, R., Pereira, H., Rodrigues, J. C., Le Bayon, I., Chantre, G., Fladung, M. & Markussen, T., 1 Jan 2002, 2002 ed. Unknown.

    Research output: Book/ReportCommissioned report

  43. Published

    Genetic homogeneity among breeding grounds and nursery areas of an exploited Lake Malawi cichlid fish.

    Genner, M. J., Nichols, P., Shaw, P. W., Carvalho, G. R., Robinson, R. L. & Turner, G. F., 1 Sept 2008, In: Freshwater Biology. 53, 9, p. 1823-1831

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Genetic evidence of the effectiveness of grey squirrel control operations: lessons from the Isle of Anglesey

    Signorile, L. & Shuttleworth, C., 2016, The grey squirrel: ecology and management in Europe. Shuttleworth, C. M., Lurz, P. W. W. & Gurnell, J. (eds.). European Squirrel Initiative, p. 439-452

    Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

  45. Published

    Genetic diversity of the feminising microsporidian parasite Dictyocoela: New insights into host-specificity, sex and phylogeography

    Wilkinson, T. J., Rock, J., Whiteley, N. M., Ovcharenko, M. O. & Ironside, J. E., 1 Aug 2011, In: International Journal for Parasitology. 41, 9, p. 959-966

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Genetic diversity and thermal performance in invasive and native populations of African fig flies

    Comeault, A., Wang, J., Tittes, S., Isbell, K., Ingley, S., Hurlbert, A. & Matute, D., 28 Feb 2020, In: Molecular Biology and Evolution.

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Genetic diversity and cryptic population re-establishment: management implications for the Bojer’s skink (Gongylomorphus bojerii)

    Melvin, Z., du Plessis, S. J., Howard-McCombe, J., Sheppard, E. C., Russo, I-R. M., Mootoocurpen, R., Goetz, M., Young, R., Cole, N. C. & Bruford, M. W., Apr 2019, In: Conservation Genetics. 20, 2, p. 137-152

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Genetic data from 28 STR loci for forensic individual identification and parentage analyses in 6 bird of prey species.

    Dawnay, N., Ogden, R., Wetton, J. H., Thorpe, R. S. & McEwing, R., 1 Mar 2009, In: Forensic Science International: Genetics. 3, 2, p. e63-e69

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Genetic control of pulp and timber properties in maritime pine (Pinus pinaster Ait.).

    Pot, D., Chantre, G., Rozenberg, P., Rodrigues, J. C., Lloyd-Jones, G., Pereira, H., Hannrup, B., Cahalan, C. M. & Plomion, C., 1 Oct 2002, In: Annals of Forest Science. 59, 5-6, p. 563-575

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Genetic assimilation of ancestral plasticity during parallel adaptation to Zinc contamination in Silene uniflora

    Wood, D., Holmberg, J., Osborne, O., Helmstetter, A. J., Dunning, L. T., Ellison, A., Smith, R. J., Lighten, J. & Papadopulos, A. S. T., Mar 2023, In: Nature Ecology and Evolution. 7, 3, p. 414-423 10 p.

    Research output: Contribution to journalArticlepeer-review