School of Ocean Sciences

  1. Published

    Vertical migration maintains phytoplankton position in a tidal channel with residual flow

    Macdonald, R. G., Bowers, D. G., McKee, D., Graham, G. W. & Nimmo-Smith, W. A., 27 Aug 2014, In: Marine Ecology Progress Series. 509, p. 113-126

    Research output: Contribution to journalArticlepeer-review

  2. Published

    Ocean Warming, More than Acidification, Reduces Shell Strength in a Commercial Shellfish Species during Food Limitation

    Mackenzie, C. L., Ormondroyd, G. A., Curling, S. F., Ball, R. J., Whiteley, N. M. & Malham, S. K., 28 Jan 2014, In: PLoS ONE. 9, 1, p. e86764

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Effects of climate change on biomineralization in a commercial shellfish species, Mytilus edulis L.

    Mackenzie, C. L., Ormondroyd, G. A., Curling, S. F., Ball, R. J., Whiteley, N. M. & Malham, S. K., 13 Mar 2013.

    Research output: Contribution to conferencePaper

  4. Published

    Future socio-economic and environmental sustainability of the Irish Sea requires a multi-disciplinary approach with industry and research collaboration, and cross-border partnership

    Mackenzie, C. L., Bell, M. C., Birchenough, S. N., Culloty, S. C., Sanderson, W. G., Whiteley, N. M. & Malham, S. K., 1 Dec 2013, In: Ocean and Coastal Management. 85, Part A, p. 1-6

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Future oceanic warming and acidification alter immune response and disease status in a commercial shellfish species, Mytilus edulis L.

    Mackenzie, C., Lynch, S. A., Culloty, S. C. & Malham, S. K., 13 Jun 2014, In: PLoS ONE. 9, 6

    Research output: Contribution to journalArticlepeer-review

  6. Published

    The Outer Bristol Channel Marine Habitat Study: Summary Document.

    Mackie, A. S., James, J. W., Rees, E. I., Darbyshire, T., Philpott, S., Mortimer, K., Jenkins, G. O. & Morando, A., 1 Jan 2006, 2006 ed. Unknown.

    Research output: Book/ReportCommissioned report

  7. Published

    Biological Sampling, Processing and Data Analysis

    Mackie, A. S., Rees, E. I., Darbyshire, T., James, J. W. (ed.), Rees, E. I., Philpott, S. (ed.), Mortimer, K. (ed.), Jenkins, G. O. (ed.) & Morando, A. (ed.), 1 Jan 2006, The Outer Bristol Channel Marine Habitat Study. BIOMOR 4. 2006 ed. Unknown, p. 34-49

    Research output: Chapter in Book/Report/Conference proceedingChapter

  8. Published

    Modelling of SAR signatures of bathymetric features in the Bristol Channel using a coupled wave-current model

    Macklin, T., Wolf, J., Wakelin, S., Elliott, A. J. & Neill, S. P., 1 Jan 2005, p. 611-618.

    Research output: Contribution to conferencePaper

  9. Published

    The benefits of combining coupled wave-current models with SAR observations for the interpretation of ocean-surface currents.

    Macklin, T., Wolf, J., Wakelin, S., Gommenginger, C., Ferrier, G., Elliott, A. J. & Neill, S. P., 23 Jan 2006.

    Research output: Contribution to conferencePaper

  10. Published

    The benefits of combining coupled wave-current models with SAR observations for the interpretation of ocean-surface currents.

    Macklin, T., Wolf, J., Wakelin, S., Gommenginger, C., Ferrier, G., Elliott, A. J. & Neill, S. P., 1 Jan 2006.

    Research output: Contribution to conferencePaper

  11. Published

    The future of Blue Carbon science

    Macreadie, P. I., Anton, A., Raven, J. A., Beaumont, N., Connolly, R. M., Friess, D. A., Kelleway, J. J., Kennedy, H., Kuwae, T., Lavery, P. S., Lovelock, C. E., Smale, D. A., Apostolaki, E. T., Atwood, T. B., Baldock, J., Bianchi, T. S., Chmura, G. L., Eyre, B. D., Fourqurean, J. W., Hall-Spencer, J. M., Huxham, M., Hendriks, I. E., Krause-Jensen, D., Laffoley, D., Luisetti, T., Marbà, N., Masque, P., McGlathery, K. J., Megonigal, J. P., Murdiyarso, D., Russell, B. D., Santos, R., Serrano, O., Silliman, B. R., Watanabe, K. & Duarte, C. M., 5 Sept 2019, In: Nature Communications. 10, 1, 3998.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Blue carbon as a natural climate solution

    Macreadie, P. I., Costa, M. D. P., Atwood, T. T., Friess, D. A., Kelleway, J. J., Kennedy, H., Lovelock, C. E., Serrano, O. & Duarte, C. M., 1 Dec 2021, In: Nature Reviews Earth and Environment. 2, p. 826-839

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Operationalizing marketable blue carbon

    Macreadie, P. I., Robertson, A. I., Spinks, B., Adams, M. P., Atchison, J. M., Bell-James, J., Bryan, B., Chu, L., Filbee-Dexter, K., Drake, L., Duarte, C. M., Friess, D. A., Gonzalez, F., Grafton, R. Q., Helmstedt, K. J., Kaebernick, M., Kelleway, J., Kendrick, G. A., Kennedy, H., Lovelock, C. E., Megonigal, J. P., Maher, D. T., Pidgeon, E., Rogers, A. A., Sturgiss, R., Trevathan-Tackett, S. M., Wartman, M., Wilson, K. A. & Rogers, K., 20 May 2022, In: One Earth. 5, 5, p. 485-492

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Stacking Ensemble Learning in Deep Domain Adaptation for Ophthalmic Image Classification

    Madadi, Y., Seydi, V., Sun, J., Chaum, E. & Yousefi2, S., 27 Sept 2021.

    Research output: Contribution to conferencePaperpeer-review

  15. Published

    Comparison between 2DV sediment transport models and measurements of suspended sediment dynamics over full-scale ripples in oscillatory flows

    Magar, V., Van Der Werf, J. J., Eidsvik, K. J., Guizien, K., Malarkey, J., Doucette, J. S., Van Rijn, L. C. (ed.), Soulsby, R. L. (ed.), Hoekstra, P. (ed.) & Davies, A. G., 1 Jan 2005, SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 ed. Aqua Publications

    Research output: Chapter in Book/Report/Conference proceedingChapter

  16. Published

    Average nutrient uptake by a self-propelled unsteady squirmer.

    Magar, V. & Pedley, T. J., 25 Sept 2005, In: Journal of Fluid Mechanics. 539, p. 93-112

    Research output: Contribution to journalArticlepeer-review

  17. Published

    Suspended sediment dynamics over rippled beds in oscillatory flows based on a 2DHV discrete-vortex/particle-tracking model

    Magar, V., Davies, A. G., Van Rijn, L. C. (ed.), Soulsby, R. L. (ed.) & Hoekstra, P. (ed.), 1 Jan 2005, SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 ed. Aqua Publications, p. 1-9

    Research output: Chapter in Book/Report/Conference proceedingChapter

  18. Published

    Effects of dredging on undersized scallops.

    Maguire, J. A., Coleman, A., Jenkins, S. R. & Burnell, G. M., 1 May 2002, In: Fisheries Research. 56, 2, p. 155-165

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Temporal and spatial variability in dredging induced stress in the great scallop Pecten maximus (L.)

    Maguire, J. A., Donoghue, M. O., Jenkins, S. R., Brand, A. R. & Burnell, G. M., 1 Jun 2002, In: Journal of Shellfish Research. 21, 1, p. 81-86

    Research output: Contribution to journalArticlepeer-review

  20. Published

    The effects of repeated dredging and speed of tow on undersized scallops.

    Maguire, J. A., Jenkins, S. R. & Burnell, G. M., 30 Nov 2002, In: Fisheries Research. 58, 3, p. 367-377

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Management recommendations for the sustainable exploitation of mussel seed in the Irish Sea.

    Maguire, J. A., Knights, T., Burnell, G., Crowe, T., O'Beirn, F., McGrath, D., Ferns, M., McDonough, N., McQuaid, N., O'Connor, B., Doyle, R., Newell, C., Seed, R., Smaal, A., O'Carroll, T., Watson, L., Dennis, J. & O'Cinneide, M., 1 Aug 2007, In: Marine Environment and Health Series. 31, p. 82

    Research output: Contribution to journalArticlepeer-review

  22. Published

    The status of Arctic charr Salvelinus alpinus in Britain and Ireland.

    Maitland, P. S., Winfield, I. J., McCarthy, I. D. & Igoe, F., 1 Mar 2007, In: Ecology of Freshwater Fish. 16, 1, p. 6-19

    Research output: Contribution to journalArticlepeer-review

  23. Published

    The present status of Arctic charr Salvelinus alpinus in the UK and Ireland.

    Maitland, P. S., Winfield, I. J., McCarthy, I. D. & Igoe, F., 1 Jan 2004.

    Research output: Contribution to conferencePaper

  24. Published

    Seismicity in the Hellenic Volcanic Arc Hydrothermal System in relation to geochemical parameters.

    Makropoulos, K., Kouskouna, V., Karnassopoulou, A., Dando, P. R. & Varnavas, S. P., 1 Jan 2000, In: Physics and Chemistry of the Earth Part B - Hydrology Oceans and Atmosphere. 25, 1, p. 19-23

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Use of Routh's correction in the cloud-in-cell discrete vortex method

    Malarkey, J. & Davies, A., 20 Sept 2002, In: Journal of Computational Physics. 181, 2, p. 753-759

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Free-stream velocity descriptions under waves with skewness and asymmetry

    Malarkey, J. & Davies, A. G., 1 Oct 2012, In: Coastal Engineering. 68, p. 78-95

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Discrete vortex modelling of oscillatory flow over ripples.

    Malarkey, J. & Davies, A. G., 1 Jun 2002, In: Applied Ocean Research. 24, 3, p. 127-145

    Research output: Contribution to journalArticlepeer-review

  28. Published

    A simple procedure for calculating the mean and maximum bed stress under wave and current conditions for rough turbulent flow based on Soulsby and Clarke's (2005) method

    Malarkey, J. & Davies, A. G., 1 Jun 2012, In: Computers and Geosciences. 43, p. 101-107

    Research output: Contribution to journalArticlepeer-review

  29. Published

    A transport model of graded sands in the oscillatory sheet-flow regime

    Malarkey, J. & Davies, A., 1 Jan 2006, Proceedings of Coastal Dynamics ’05 held 4-8 April: Barcelona. 2006 ed. American Society of Civil Engineers, p. 14

    Research output: Chapter in Book/Report/Conference proceedingChapter

  30. Published

    The pervasive role of biological cohesion in bedform development

    Malarkey, J., Baas, J. H., Hope, J. A., Aspenden, R. J., Parsons, D. R., Peakall, J., Peterson, D. M., Schindler, R. J., Ye, L., Lichtman, I. D., Bass, S. J., Davies, A. G., Manning, A. J. & Thorne, P. D., 6 Feb 2015, In: Nature Communications. 6, 6257

    Research output: Contribution to journalArticlepeer-review

  31. Published

    A simple method to determine the settling velocity distribution from settling velocity tubes

    Malarkey, J., Jago, C. F., Hubner, R. & Jones, S., 8 Feb 2013, In: Continental Shelf Research. 56, p. 82-89

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Modelling and observation of oscillatory sheet-flow sediment transport.

    Malarkey, J., Pan, S., Li, M., O'Donoghue, T., Davies, A. G. & O'Connor, B. A., 1 Aug 2009, In: Ocean Engineering. 36, 11, p. 873-890

    Research output: Contribution to journalArticlepeer-review

  33. Published

    An eddy viscosity formulation for oscillatory flow over vortex ripples

    Malarkey, J. & Davies, A. G., 14 Dec 2004, In: Journal of Geophysical Research - Oceans. 109, C12, p. C12016

    Research output: Contribution to journalArticlepeer-review

  34. Published

    A simple model of unsteady sheet flow sediment transport.

    Malarkey, J., Davies, A. G. & Li, Z., 1 Jun 2003, In: Coastal Engineering. 48, 3, p. 171-188

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Mixing efficiency of sediment and momentum above rippled beds under oscillatory flows

    Malarkey, J., Magar, V. & Davies, A. G., 19 Aug 2015, In: Continental Shelf Research. 108, p. 76-88

    Research output: Contribution to journalArticlepeer-review

  36. Published

    UWB 1DV sand transport model

    Malarkey, J., Van Rijn, L. C. (ed.), Soulsby, R. L. (ed.), Hoekstra, P. (ed.) & Davies, A. G. (ed.), 1 Jan 2005, SANDPIT: Sand Transport and Morphology of Offshore Sand Mining Pits. 2005 ed. Aqua Publications, p. 1-8

    Research output: Chapter in Book/Report/Conference proceedingChapter

  37. Published

    A transport model of graded sands in the oscillatory sheet-flow regime.

    Malarkey, J. & Davies, A. G., 4 Apr 2006, p. 14.

    Research output: Contribution to conferencePaper

  38. Published

    A Review of freestream descriptions and velocity and acceleration skewness: CAMS Report 2008-5

    Malarkey, J., 1 Jan 2008, 2008 ed. Unknown.

    Research output: Book/ReportCommissioned report

  39. Published

    A non-iterative procedure for the Wiberg and Harris (1994) oscillatory sand ripple predictor.

    Malarkey, J. & Davies, A. G., 1 Jun 2003, In: Journal of Coastal Research. 19, 3, p. 738-739

    Research output: Contribution to journalArticlepeer-review

  40. Published

    A simple model of oscillatory sheet flow

    Malarkey, J., Davies, A. G. & Li, Z., 1 Jul 2002.

    Research output: Contribution to conferencePaper

  41. Published

    Line vortices and the vacillation of Langmuir circulation

    Malarkey, J. & Thorpe, S., 23 Jun 2016, In: Journal of Physical Oceanography. 46, 7, p. 2123-2141

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Modelling wave-current interactions in rough turbulent bottom boundary layers

    Malarkey, J. & Davies, A., Feb 1998, In: Ocean Engineering. 25, 2-3, p. 119-141

    Research output: Contribution to journalArticlepeer-review

  43. Published

    A one–phase sheet flow model of sediment transport

    Malarkey, J., Davies, A. G., Van Rijn, L. C. (ed.), Davies, A. G. (ed.) & Van De Graaff, J. R. (ed.), 1 Jan 2001, SEDMOC: Sediment Transport Modelling in Marine Coastal Environments. 2001 ed. Aqua Publications, p. 1-8

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. Published

    Spatial and temporal heterogeneity of bacteria across an intertidal shellfish bed: Implications for regulatory monitoring of faecal indicator organisms

    Malham, S., Clements, K., Quilliam, R. S., Jones, D. L., Wilson, J. & Malham, S. K., 14 Nov 2014, In: Science of the Total Environment. 506, p. 1-9

    Research output: Contribution to journalArticlepeer-review

  45. Published

    The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters

    Malham, S. K., Rajko-Nenow, P., Howlett, E., Tuson, K. E., Perkins, T. L., Pallett, D. W., Wang, H., Jago, C. F., Jones, D. L. & McDonald, J. E., 7 Jul 2014, In: Environmental Science: Processes and Impacts. 16, p. 2145-2155

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Testing the response of oysters exposed to chemicals X, Y, and Z

    Malham, S. K., Walton, M. W., Latchford, J. W., King, J. W. & Greenwell, H. C., 1 Jan 2006, 2006 ed. Centre for Applied Marine Sciences.

    Research output: Book/ReportCommissioned report

  47. Published

    Summer mortality of the Pacific oyster, Crassostrea gigas, in the Irish Sea: The influence of temperature and nutrients on health and survival.

    Malham, S., Cotter, E., O'Keeffe, S., Lynch, S., Culloty, S. C., King, J. W., Latchford, J. W. & Beaumont, A., 1 Feb 2009, In: Aquaculture. 287, 1-2, p. 128-138

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters

    Malham, S., Farkas, K., McDonald, J., Jones, D. L., Cooper, D. & de Rougemont, A., 1 Sept 2018, In: Science of the Total Environment. 634, p. 1174 1183 p.

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Trawling disturbance effects on the trophic ecology of two co-generic Astropectinid species

    Mangano, M. C., Kaiser, M. J., Porporato, E. M., Lambert, G. I. & Spano, N., 7 Sept 2015, In: Mediterranean Marine Science. 16, 3, p. 538-549

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Infaunal community responses to a gradient of trawling disturbance and a long-term Fishery Exclusion Zone in the Southern Tyrrhenian Sea

    Mangano, M. C., Kaiser, M. J., Porporato, E. M., Lambert, G. I., Rinelli, P. & Spano, N., 15 Mar 2014, In: Continental Shelf Research. 76, p. 25-35

    Research output: Contribution to journalArticlepeer-review