Genome Analysis of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans CF27

Talla, E., Hedrich, S., Ji, B. Y., Johnson, D. B. & Bonnefoy, V., 1 Oct 2013, In: Advanced Materials Research. 825, p. 145-148

Research output: Contribution to journal › Article › peer-review

Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution

Dittrich, C., Hoelzl, F., Smith, S., Fouilloux, C. A., Parker, D. J., O'Connell, L. A., Knowles, L. S., Hughes, M., Fewings, A., Morgan, R., Rojas, B. & Comeault, A. A., 5 Jun 2024, In: Genome Biology and Evolution. 16, 6

Research output: Contribution to journal › Article › peer-review

Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)

Hai, T., Golyshin, P. N., Werner, J., Chernikova, T. N., Tran, H., Ferrer, M., Yakimov, M. M., Teeling, H. & Golyshina, O. V., 18 Apr 2013, In: Genome Announcements. 1, 2, p. e00141-13

Research output: Contribution to journal › Article › peer-review

Genome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix

Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

Research output: Contribution to journal › Article › peer-review

Genome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23T

Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2

Research output: Contribution to journal › Article › peer-review

Genome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3

Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

Research output: Contribution to journal › Article › peer-review

Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)

Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4

Research output: Contribution to journal › Article › peer-review

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Golyshina, O., Hai, T., Kube, M., Chernikova, T. N., Al-Ramahi, Y., Beloqui, A., Lopez-Cortez, N., Guazzaroni, M. E., Heipieper, H. J., Klages, S., Kotsyurbenko, O. R., Langer, I., Nechitaylo, T. Y., Lünsdorf, H., Fernández, M., Juárez, S., Ciordia, S., Singer, A., Kagan, O., Egorova, O., Petit, P. A., Stogios, P., Kim, Y., Tchigvintsev, A., Flick, R., Denaro, R., Genovese, M., Albar, J. P., Reva, O. N., Martínez-Gomariz, M., Tran, H., Ferrer, M., Savchenko, A., Yakunin, A. F., Yakimov, M. M., Golyshina, O. V., Reinhardt, R. & Golyshin, P. N., 23 Jul 2013, In: Nature Communications. 4, p. 2156

Research output: Contribution to journal › Article › peer-review

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Golyshin, P. N., Dos Santos, V. A., Kaiser, O., Ferrer, M., Sabirova, Y. S., Lunsdorf, H., Chernikova, T. N., Golyshina, O. V., Yakimov, M. M., Puhler, A. & Timmis, K. N., 19 Dec 2003, In: Journal of Biotechnology. 106, 2-3, p. 215-220

Research output: Contribution to journal › Article › peer-review

Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

Hargreaves, A. D., Zhou, L., Christensen, J., Marletaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Seriwaka, K., Fox, B. A., Taylor, W. R., Mulley, J., Zhang, G., Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America: PNAS. 114, 29, p. 7677–7682

Research output: Contribution to journal › Article › peer-review

Genome sequence of obligate marine polycyclic aromatic hydrocarbons-degrading bacterium Cycloclasticus sp 78-ME, isolated from petroleum deposits of the sunken tanker Amoco Milford Haven, Mediterranean Sea

Messina, E., Denaro, R., Crisafi, F., Smedile, F., Cappello, S., Genovese, M., Genovese, L., Giuliano, L., Russo, D., Ferrer, M. & Golyshin, P., 24 Oct 2015, In: Marine Genomics. 25, p. 11-13

Research output: Contribution to journal › Article › peer-review

Genome sequence of the nematode C-elegans: A platform for investigating biology

C. elegans sequencing consortium & Smith, A., 11 Dec 1998, In: Science. 282, 5396, p. 2012-2018

Research output: Contribution to journal › Review article › peer-review

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Schneiker, S., Martins dos Santos, V. A. P., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorhölter, F.-J., Weidner, S., Kaiser, O. & Golyshin, P. N., 30 Jul 2006, In: Nature Biotechnology. 24, 8, p. 997-1004 8 p.

Research output: Contribution to journal › Article › peer-review

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

Kirkness, E. F., Hass, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubio, J. M., Ribeiro, J. M., Rozas, J., Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguade, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the USA. 107, 27, p. 12168-12173

Research output: Contribution to journal › Article › peer-review

Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis.

Card, D. C., Vonk, F. J., Smallbrugge, S., Casewell, N. R., Wüster, W., Castoe, T. A., Schuett, G. W. & Booth, W., 31 Mar 2021, In: Scientific Reports. 11, 1, 9 p., 7271.

Research output: Contribution to journal › Article › peer-review

Genomic analysis of bacteria in the Acute Oak Decline pathobiome

Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Jan 2019, In: Microbial Genomics. 5, 1, 15 p.

Research output: Contribution to journal › Article › peer-review

Genomic and mechanistic insights into the biodegradation of organic pollutants.

Pieper, D. H., Dos Santos, V. A. & Golyshin, P. N., 1 Jun 2004, In: Current Opinion in Biotechnology. 15, 3, p. 215-224

Research output: Contribution to journal › Article › peer-review

Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions

Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238

Research output: Contribution to journal › Article › peer-review

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

Malinsky, M., Challis, R. J., Tyers, A. M., Schiffels, S., Terai, Y., Ngatunga, B. P., Miska, E. A., Durbin, R., Genner, M. J. & Turner, G. F., 18 Dec 2015, In: Science. 350, 6267, p. 1493-1498

Research output: Contribution to journal › Article › peer-review

Genomic organisation of the seven ParaHox genes of coelacanths

Mulley, J. F. & Holland, P. W., 1 Sept 2014, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 322, 6, p. 352-358

Research output: Contribution to journal › Article › peer-review

Genomic signatures of admixture and selection are shared among populations of Zaprionus indianus across the western hemisphere

Comeault, A., Kautt, A. F. & Matute, D. R., Dec 2021, In: Molecular Ecology. 30, 23, p. 6193-6210 18 p.

Research output: Contribution to journal › Article › peer-review

Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota

La Cono, V., Smedile, F., Ferrer, M., Golyshin, P. N., Giuliano, L. & Yakimov, M. M., Sept 2010, In: Microbial Biotechnology. 3, 5, p. 595-606 12 p.

Research output: Contribution to journal › Article › peer-review

Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

Nielsen, E. E., Hemmer-Hansen, J., Poulsen, N. A., Loeschcke, V., Moen, T., Johansen, T., Mittelholzer, C., Taranger, G. L., Ogden, R. & Carvalho, G. R., 1 Dec 2009, In: BMC Evolutionary Biology. 9, p. 276

Research output: Contribution to journal › Article › peer-review

Genomics and morphometry of herbarium specimens elucidate the origin of the Cape Verde date palm (Phoenix atlantica A.Chev.) and highlight its agronomic potential

Vian, J. C., Pérez-Escobar, O. A., Baker, W. J., Bonhomme, V., Ferrand, S., Ivorra, S., Kaczmarek, T., Pagnoux, C., Terral, J.-F., Wales, N., Purugganan, M. D., Creer, S., Papadopulos, A. S. T., Bellot, S. & Gros-Batlthazard, M., 11 Feb 2025, (E-pub ahead of print) In: Plants, People, Planet.

Research output: Contribution to journal › Article › peer-review

Genomics reveals broad hybridization in deeply divergent Palearctic grass and water snakes (Natrix spp.)

Schöneberg, Y., Winter, S., Arribas, O., Di Nicola, M. R., Master, M., Owens, J. B., Rovatsos, M., Wüster, W., Janke, A. & Fritz, U., Jul 2023, In: Molecular Phylogenetics and Evolution. 184, 9 p., 107787.

Research output: Contribution to journal › Article › peer-review

Geochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales

Coupland, K. & Johnson, D. B., 1 Apr 2004, In: Geobiology. 2, 2, p. 77-86

Research output: Contribution to journal › Article › peer-review

Geoengineering: taking control of our planet's climate?

Ridgwell, A., Freeman, C. & Lampitt, R., 13 Sept 2012, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 370, p. 4163-4165

Research output: Contribution to journal › Article › peer-review

Geographic distribution: Bothriopsis taeniata or Bothrops taeniatus (Speckled forest-pitviper).

Wuster, W., Freire, L. A., Garcia, F., Wüster, W. & Kuch, U., 1 Jan 2003, In: Herpetological Review. 34, p. 263

Research output: Contribution to journal › Article › peer-review

Geographical Ecology of Dry Forest Tree Communities in the West Indies

Franklin, J., Andrade, R., Daniels, M. L., Fairbairn, P., Fandino, M. C., Gillespie, T. W., González, G., González, O., Imbert, D., Kapos, V., Kelly, D. L., Marcano-Vega, H., Meléndez-Ackerman, E. J., McLaren, K. P., McDonald, M. A., Ripplinger, J., Rojas-Sandoval, J., Ross, M. S., Ruiz, J., Steadman, D. W., Tanner, E. V. J., Terrill, I. & Vennetier, M., May 2018, In: Journal of Biogeography. 45, 5, p. 1168-1181

Research output: Contribution to journal › Article › peer-review

Geographical ancestry of Lake Malawi's cichlid fish diversity

Genner, M. J., Ngatunga, B. P., Mzighani, S., Smith, A. & Turner, G. F., 10 Jun 2015, In: Biology Letters. 11, 6, p. Article Number: 20150232

Research output: Contribution to journal › Article › peer-review

Geographical structure of genetic diversity in Loudetia simplex (Poaceae) in Madagascar and South Africa

Hagl, P. A., Gargiulo, R., Fay, M. F., Solofondranohatra, C., Salmona, J., Suescun, U., Rakotomalala, N., Lehmann, C. E. R., Besnard, G., Papadopulos, A. S. T. & Vorontsova, M. S., 15 Apr 2021, In: Botanical Journal of the Linnean Society. 196, 1, p. 81-99 19 p.

Research output: Contribution to journal › Article › peer-review

Geographical variation in carbon dioxide fluxes from soils in agro-ecosystems and its implications for life-cycle assessment.

Koerber, G. R., Edwards-Jones, G., Hill, P. W., Mila I Canals, L., Nyeko, P., York, E. H. & Jones, D. L., 1 Apr 2009, In: Journal of Applied Ecology. 46, 2, p. 306-314

Research output: Contribution to journal › Article › peer-review

Geometric, electronic and elastic properties of dental silver amalgam γ-(Ag3Sn), γ1-(Ag2Hg3), γ2-(Sn8Hg) phases, comparison of experiment and theory.

Chasse, G. A., Davies, R. A., Ardalan, S., Mu, W. H., Tian, K., Farsaikiya, F., Darvell, B. W. & Chass, G. A., 1 May 2010, In: Intermetallics. 18, 5, p. 756-760

Research output: Contribution to journal › Article › peer-review

Geometrid moth assemblages reflect high conservation value of naturally regenerated secondary forests in temperate China

Zou, Y., Sang, W., Warren-Thomas, E. & Axmacher, J. C., 15 Aug 2016, In: Forest Ecology and Management. 374, p. 111-118

Research output: Contribution to journal › Article › peer-review

Geomicrobiology of extremely acidic subsurface environments

Johnson, D. B., 1 Jul 2012, In: Fems Microbiology Ecology. 81, 1, p. 2-12

Research output: Contribution to journal › Article › peer-review

Gestation alters the gut microbiota of an oviparous lizard

Trevelline, B. K., MacLeod, K. J., Langkilde, T. & Kohl, K. D., 1 Jul 2019, In: Fems Microbiology Ecology. 95, 7

Research output: Contribution to journal › Article › peer-review

Get an eyeful of this: a new species of giant spitting cobra from eastern and north-eastern Africa (Squamata : Serpentes : Elapidae : Naja)

Wuster, W., Wüster, W. & Broadley, D. G., 1 Jan 2007, In: Zootaxa. 1532, p. 51-68

Research output: Contribution to journal › Article › peer-review

Getting what you pay for: the challenge of measuring success in conservation

Jones, J. P. G., Jun 2012, In: Animal Conservation. 15, 3, p. 227-228

Research output: Contribution to journal › Article › peer-review

Global Linkage Map Connects Meiotic Centromere Function to Chromosome Size in Budding Yeast

Baryshnikova, A., VanderSluis, B., Costanzo, M., Myers, C. L., Cha, R. S., Andrews, B. & Boone, C., 1 Oct 2013, In: G3: Genes, Genomes, Genetics. 3, 10, p. 1741-1751

Research output: Contribution to journal › Article › peer-review

Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems

Yeluripati, J. B., del Prado, A., Sanz-Cobena, A., Rees, R. M., Li, C. S., Chadwick, D. R., Tilston, E., Topp, C. F., Cardenas, L. M., Ingraham, P., Gilhespy, S., Anthony, S., Vetter, S. H., Misselbrook, T., Salas, W. & Smith, P., 15 Jan 2015, In: Computers and Electronics in Agriculture. 111, p. 112-120

Research output: Contribution to journal › Article › peer-review

Global Research Alliance N2 O chamber methodology guidelines: Introduction, with health and safety considerations

de Klein, C. A. M., Harvey, M. J., Clough, T. J., Petersen, S. O., Chadwick, D. R. & Venterea, R. T., Sept 2020, In: Journal of Environmental Quality. 49, 5, p. 1073-1080 8 p.

Research output: Contribution to journal › Article › peer-review

Global analysis of agricultural soil denitrification in response to fertilizer nitrogen

Wang, J., Chadwick, D., Cheng, Y. & Yan, X., 1 Mar 2018, In: Science of the Total Environment. 616-617, p. 908-917

Research output: Contribution to journal › Article › peer-review

Global analysis of the relationship between reconstructed solar induced chlorophyll fluorescence (SIF) and gross primary production (GPP)

Gao, H., Liu, S., Lu, W., Smith, A., Valbuena, R., Yan, W., Wang, Z., Xiao, L., Peng, X., Li, Q., Feng, Y., McDonald, M., Pagella, T., Liao, J., Wu, Z. & Zhang, G., 18 Jul 2021, In: Remote Sensing. 13, 14

Research output: Contribution to journal › Article › peer-review

Global analysis of yield benefits and risks from integrating trees with rice and implications for agroforestry research in Africa

Rodenburg, J., Mollee, E., Coe, R. & Sinclair, F., 15 May 2022, In: Field Crops Research. 281

Research output: Contribution to journal › Article › peer-review

Global disruption of coral broadcast spawning associated with artificial light at night

Davies, T. W., Levy, O., Tidau, S., Fernandes de Barros Marangoni, L., Wiedenmann, J., D’Angelo, C. & Smyth, T., 15 May 2023, In: Nature Communications. 14, 2511.

Research output: Contribution to journal › Article › peer-review

Global methane and nitrous oxide emissions from inland waters and estuaries

Zheng, Y., Wu, S., Xiao, S., Yu, K., Fang, X., Xia, L., Wang, J., Liu, S., Freeman, C. & Zou, J., Aug 2022, In: Global Change Biology. 28, 15, p. 4713-4725 13 p.

Research output: Contribution to journal › Article › peer-review

Global no net loss of natural ecosystems

Maron, M., Simmonds, J. S., Watson, J. E. M., Sonter, L. J., Bennun, L., Griffiths, V. F., Quétier, F., von Hase, A., Edwards, S., Rainey, H., Bull, J. W., Savy, C. E., Victurine, R., Kiesecker, J., Puydarrieux, P., Stevens, T., Cozannet, N. & Jones, J. P. G., Jan 2020, In: Nature Ecology and Evolution. 4, 1, p. 46-49 33.

Research output: Contribution to journal › Article › peer-review